├── .DS_Store ├── .github └── workflows │ ├── greetings.yml │ └── label.yml ├── .gitignore ├── .readthedocs.yaml ├── .vscode └── settings.json ├── LICENSE ├── README.md ├── code ├── app.py ├── app_CI.py ├── app_comb.py ├── app_link.py ├── app_link_B.py ├── app_nl_demo.py ├── app_plot.py ├── app_sir_ev.py ├── app_test.py ├── app_test_v1.py ├── app_true_link.py ├── data_csv.py ├── data_plink.py ├── meta.py ├── neg_control.py ├── perm.py ├── plot.py ├── preprocessing.py ├── qq-plot.py ├── requirements.txt ├── sim_data.py ├── sim_invalid_iv_RE.py └── sim_select_var.py ├── docs ├── .DS_Store ├── Makefile ├── make.bat ├── requirements.txt └── source │ ├── .DS_Store │ ├── .readthedocs.yaml │ ├── conf.py │ ├── example.rst │ ├── figs │ ├── .DS_Store │ ├── TOMM40-link.png │ ├── TOMM40-q4-link.png │ ├── ZNF296-q4-link.png │ ├── may23_app_test-select.png │ ├── oct04_ben_app_comb.png │ ├── oct04_ben_app_test.png │ ├── perm_r3_s1.png │ ├── perm_r3_s2.png │ ├── sep30_ben_app_comb.png │ ├── sim_test_n5p10.png │ ├── sim_test_weakIV.png │ └── test-select-qq_plot.png │ ├── index.rst │ ├── installation.rst │ ├── logo.png │ ├── logo │ ├── logo.png │ ├── logo_c.png │ ├── logo_cover.png │ ├── logo_cover_transparent.png │ ├── logo_transparent.png │ └── nl_causal.png │ ├── md │ ├── README.md │ ├── index.rst │ └── user_guide.md │ ├── nb │ ├── app_test.ipynb │ ├── sim.ipynb │ ├── sim_invalid_IVs.ipynb │ └── sparse_regression.ipynb │ └── tutorial.rst ├── figs ├── .DS_Store ├── TOMM40-link.png ├── TOMM40-q4-link.png ├── ZNF296-q4-link.png ├── may23_app_test-select.png ├── oct04_ben_app_comb.png ├── oct04_ben_app_test.png ├── perm_r3_s1.png ├── perm_r3_s2.png ├── sep30_ben_app_comb.png ├── sim_test_n5p10.png ├── sim_test_weakIV.png └── test-select-qq_plot.png ├── logo ├── logo.png ├── logo_c.png ├── logo_cover.png ├── logo_cover_transparent.png ├── logo_transparent.png ├── model.gif ├── model_black.gif ├── model_white.gif └── nl_causal.png ├── md ├── README.md ├── index.rst └── user_guide.md ├── nb ├── app_test.ipynb ├── sim.ipynb ├── sim_invalid_IVs.ipynb └── sparse_regression.ipynb ├── nl_causal ├── .DS_Store ├── __init__.py ├── base │ ├── __init__.py │ ├── preprocessing.py │ ├── rv.py │ ├── sim_data.py │ └── testing.py ├── sparse_reg │ ├── .DS_Store │ ├── __init__.py │ └── sparse_reg.py └── ts_models │ ├── __init__.py │ ├── _base.py │ └── ts_twas.py ├── requirements.txt ├── results ├── .DS_Store ├── Apr12_22_app_test+select.csv ├── Apr12_22_app_test-select.csv ├── Apr9_22_app_test.csv ├── aug24_ben_test.csv ├── nov22_ben_app_CI.csv ├── nov22_ben_app_CI95.csv ├── nov4_ben_app_CI.csv ├── oct04_ben_test_refined_genes.csv ├── sep19_ben_CI.csv ├── sep23_ben_app_CI.csv └── sep23_ben_test_refined_genes.csv ├── setup.py └── sim ├── sim.py ├── sim_CI.py ├── sim_CI_LS.py ├── sim_CI_epi.py ├── sim_CI_invalid_iv.py ├── sim_Mtest.py ├── sim_cate.py ├── sim_data.py ├── sim_epi.py ├── sim_invalid_iv.py ├── sim_link.py ├── sim_out.md ├── sim_test.py ├── test_elanet.py └── weak_IV.py /.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/.DS_Store -------------------------------------------------------------------------------- /.github/workflows/greetings.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/.github/workflows/greetings.yml -------------------------------------------------------------------------------- /.github/workflows/label.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/.github/workflows/label.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/.gitignore -------------------------------------------------------------------------------- /.readthedocs.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/.readthedocs.yaml -------------------------------------------------------------------------------- /.vscode/settings.json: -------------------------------------------------------------------------------- 1 | { 2 | "esbonio.sphinx.confDir": "" 3 | } -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/README.md -------------------------------------------------------------------------------- /code/app.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/app.py -------------------------------------------------------------------------------- /code/app_CI.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/app_CI.py -------------------------------------------------------------------------------- /code/app_comb.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/app_comb.py -------------------------------------------------------------------------------- /code/app_link.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/app_link.py -------------------------------------------------------------------------------- /code/app_link_B.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/app_link_B.py -------------------------------------------------------------------------------- /code/app_nl_demo.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/app_nl_demo.py -------------------------------------------------------------------------------- /code/app_plot.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/app_plot.py -------------------------------------------------------------------------------- /code/app_sir_ev.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/app_sir_ev.py -------------------------------------------------------------------------------- /code/app_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/app_test.py -------------------------------------------------------------------------------- /code/app_test_v1.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/app_test_v1.py -------------------------------------------------------------------------------- /code/app_true_link.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/app_true_link.py -------------------------------------------------------------------------------- /code/data_csv.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/data_csv.py -------------------------------------------------------------------------------- /code/data_plink.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/data_plink.py -------------------------------------------------------------------------------- /code/meta.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/meta.py -------------------------------------------------------------------------------- /code/neg_control.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/neg_control.py -------------------------------------------------------------------------------- /code/perm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/perm.py -------------------------------------------------------------------------------- /code/plot.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/plot.py -------------------------------------------------------------------------------- /code/preprocessing.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/preprocessing.py -------------------------------------------------------------------------------- /code/qq-plot.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/qq-plot.py -------------------------------------------------------------------------------- /code/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/requirements.txt -------------------------------------------------------------------------------- /code/sim_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/sim_data.py -------------------------------------------------------------------------------- /code/sim_invalid_iv_RE.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/sim_invalid_iv_RE.py -------------------------------------------------------------------------------- /code/sim_select_var.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/code/sim_select_var.py -------------------------------------------------------------------------------- /docs/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/.DS_Store -------------------------------------------------------------------------------- /docs/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/Makefile -------------------------------------------------------------------------------- /docs/make.bat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/make.bat -------------------------------------------------------------------------------- /docs/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/requirements.txt -------------------------------------------------------------------------------- /docs/source/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/.DS_Store -------------------------------------------------------------------------------- /docs/source/.readthedocs.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/.readthedocs.yaml -------------------------------------------------------------------------------- /docs/source/conf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/conf.py -------------------------------------------------------------------------------- /docs/source/example.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/example.rst -------------------------------------------------------------------------------- /docs/source/figs/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/figs/.DS_Store -------------------------------------------------------------------------------- /docs/source/figs/TOMM40-link.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/figs/TOMM40-link.png -------------------------------------------------------------------------------- /docs/source/figs/TOMM40-q4-link.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/figs/TOMM40-q4-link.png -------------------------------------------------------------------------------- /docs/source/figs/ZNF296-q4-link.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/figs/ZNF296-q4-link.png -------------------------------------------------------------------------------- /docs/source/figs/may23_app_test-select.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/figs/may23_app_test-select.png -------------------------------------------------------------------------------- /docs/source/figs/oct04_ben_app_comb.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/figs/oct04_ben_app_comb.png -------------------------------------------------------------------------------- /docs/source/figs/oct04_ben_app_test.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/figs/oct04_ben_app_test.png -------------------------------------------------------------------------------- /docs/source/figs/perm_r3_s1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/figs/perm_r3_s1.png -------------------------------------------------------------------------------- /docs/source/figs/perm_r3_s2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/figs/perm_r3_s2.png -------------------------------------------------------------------------------- /docs/source/figs/sep30_ben_app_comb.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/figs/sep30_ben_app_comb.png -------------------------------------------------------------------------------- /docs/source/figs/sim_test_n5p10.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/figs/sim_test_n5p10.png -------------------------------------------------------------------------------- /docs/source/figs/sim_test_weakIV.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/figs/sim_test_weakIV.png -------------------------------------------------------------------------------- /docs/source/figs/test-select-qq_plot.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/figs/test-select-qq_plot.png -------------------------------------------------------------------------------- /docs/source/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/index.rst -------------------------------------------------------------------------------- /docs/source/installation.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/installation.rst -------------------------------------------------------------------------------- /docs/source/logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/logo.png -------------------------------------------------------------------------------- /docs/source/logo/logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/logo/logo.png -------------------------------------------------------------------------------- /docs/source/logo/logo_c.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/logo/logo_c.png -------------------------------------------------------------------------------- /docs/source/logo/logo_cover.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/logo/logo_cover.png -------------------------------------------------------------------------------- /docs/source/logo/logo_cover_transparent.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/logo/logo_cover_transparent.png -------------------------------------------------------------------------------- /docs/source/logo/logo_transparent.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/logo/logo_transparent.png -------------------------------------------------------------------------------- /docs/source/logo/nl_causal.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/logo/nl_causal.png -------------------------------------------------------------------------------- /docs/source/md/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/md/README.md -------------------------------------------------------------------------------- /docs/source/md/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/md/index.rst -------------------------------------------------------------------------------- /docs/source/md/user_guide.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/md/user_guide.md -------------------------------------------------------------------------------- /docs/source/nb/app_test.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/nb/app_test.ipynb -------------------------------------------------------------------------------- /docs/source/nb/sim.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/nb/sim.ipynb -------------------------------------------------------------------------------- /docs/source/nb/sim_invalid_IVs.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/nb/sim_invalid_IVs.ipynb -------------------------------------------------------------------------------- /docs/source/nb/sparse_regression.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/nb/sparse_regression.ipynb -------------------------------------------------------------------------------- /docs/source/tutorial.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/docs/source/tutorial.rst -------------------------------------------------------------------------------- /figs/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/figs/.DS_Store -------------------------------------------------------------------------------- /figs/TOMM40-link.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/figs/TOMM40-link.png -------------------------------------------------------------------------------- /figs/TOMM40-q4-link.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/figs/TOMM40-q4-link.png -------------------------------------------------------------------------------- /figs/ZNF296-q4-link.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/figs/ZNF296-q4-link.png -------------------------------------------------------------------------------- /figs/may23_app_test-select.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/figs/may23_app_test-select.png -------------------------------------------------------------------------------- /figs/oct04_ben_app_comb.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/figs/oct04_ben_app_comb.png -------------------------------------------------------------------------------- /figs/oct04_ben_app_test.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/figs/oct04_ben_app_test.png -------------------------------------------------------------------------------- /figs/perm_r3_s1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/figs/perm_r3_s1.png -------------------------------------------------------------------------------- /figs/perm_r3_s2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/figs/perm_r3_s2.png -------------------------------------------------------------------------------- /figs/sep30_ben_app_comb.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/figs/sep30_ben_app_comb.png -------------------------------------------------------------------------------- /figs/sim_test_n5p10.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/figs/sim_test_n5p10.png -------------------------------------------------------------------------------- /figs/sim_test_weakIV.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/figs/sim_test_weakIV.png -------------------------------------------------------------------------------- /figs/test-select-qq_plot.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/figs/test-select-qq_plot.png -------------------------------------------------------------------------------- /logo/logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/logo/logo.png -------------------------------------------------------------------------------- /logo/logo_c.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/logo/logo_c.png -------------------------------------------------------------------------------- /logo/logo_cover.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/logo/logo_cover.png -------------------------------------------------------------------------------- /logo/logo_cover_transparent.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/logo/logo_cover_transparent.png -------------------------------------------------------------------------------- /logo/logo_transparent.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/logo/logo_transparent.png -------------------------------------------------------------------------------- /logo/model.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/logo/model.gif -------------------------------------------------------------------------------- /logo/model_black.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/logo/model_black.gif -------------------------------------------------------------------------------- /logo/model_white.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/logo/model_white.gif -------------------------------------------------------------------------------- /logo/nl_causal.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/logo/nl_causal.png -------------------------------------------------------------------------------- /md/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/md/README.md -------------------------------------------------------------------------------- /md/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/md/index.rst -------------------------------------------------------------------------------- /md/user_guide.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/md/user_guide.md -------------------------------------------------------------------------------- /nb/app_test.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/nb/app_test.ipynb -------------------------------------------------------------------------------- /nb/sim.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/nb/sim.ipynb -------------------------------------------------------------------------------- /nb/sim_invalid_IVs.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/nb/sim_invalid_IVs.ipynb -------------------------------------------------------------------------------- /nb/sparse_regression.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/nb/sparse_regression.ipynb -------------------------------------------------------------------------------- /nl_causal/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/nl_causal/.DS_Store -------------------------------------------------------------------------------- /nl_causal/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/nl_causal/__init__.py -------------------------------------------------------------------------------- /nl_causal/base/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/nl_causal/base/__init__.py -------------------------------------------------------------------------------- /nl_causal/base/preprocessing.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/nl_causal/base/preprocessing.py -------------------------------------------------------------------------------- /nl_causal/base/rv.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/nl_causal/base/rv.py -------------------------------------------------------------------------------- /nl_causal/base/sim_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/nl_causal/base/sim_data.py -------------------------------------------------------------------------------- /nl_causal/base/testing.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/nl_causal/base/testing.py -------------------------------------------------------------------------------- /nl_causal/sparse_reg/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/nl_causal/sparse_reg/.DS_Store -------------------------------------------------------------------------------- /nl_causal/sparse_reg/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/nl_causal/sparse_reg/__init__.py -------------------------------------------------------------------------------- /nl_causal/sparse_reg/sparse_reg.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/nl_causal/sparse_reg/sparse_reg.py -------------------------------------------------------------------------------- /nl_causal/ts_models/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/nl_causal/ts_models/__init__.py -------------------------------------------------------------------------------- /nl_causal/ts_models/_base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/nl_causal/ts_models/_base.py -------------------------------------------------------------------------------- /nl_causal/ts_models/ts_twas.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/nl_causal/ts_models/ts_twas.py -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/requirements.txt -------------------------------------------------------------------------------- /results/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/results/.DS_Store -------------------------------------------------------------------------------- /results/Apr12_22_app_test+select.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/results/Apr12_22_app_test+select.csv -------------------------------------------------------------------------------- /results/Apr12_22_app_test-select.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/results/Apr12_22_app_test-select.csv -------------------------------------------------------------------------------- /results/Apr9_22_app_test.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/results/Apr9_22_app_test.csv -------------------------------------------------------------------------------- /results/aug24_ben_test.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/results/aug24_ben_test.csv -------------------------------------------------------------------------------- /results/nov22_ben_app_CI.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/results/nov22_ben_app_CI.csv -------------------------------------------------------------------------------- /results/nov22_ben_app_CI95.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/results/nov22_ben_app_CI95.csv -------------------------------------------------------------------------------- /results/nov4_ben_app_CI.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/results/nov4_ben_app_CI.csv -------------------------------------------------------------------------------- /results/oct04_ben_test_refined_genes.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/results/oct04_ben_test_refined_genes.csv -------------------------------------------------------------------------------- /results/sep19_ben_CI.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/results/sep19_ben_CI.csv -------------------------------------------------------------------------------- /results/sep23_ben_app_CI.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/results/sep23_ben_app_CI.csv -------------------------------------------------------------------------------- /results/sep23_ben_test_refined_genes.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/results/sep23_ben_test_refined_genes.csv -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/setup.py -------------------------------------------------------------------------------- /sim/sim.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/sim/sim.py -------------------------------------------------------------------------------- /sim/sim_CI.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/sim/sim_CI.py -------------------------------------------------------------------------------- /sim/sim_CI_LS.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/sim/sim_CI_LS.py -------------------------------------------------------------------------------- /sim/sim_CI_epi.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/sim/sim_CI_epi.py -------------------------------------------------------------------------------- /sim/sim_CI_invalid_iv.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/sim/sim_CI_invalid_iv.py -------------------------------------------------------------------------------- /sim/sim_Mtest.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/sim/sim_Mtest.py -------------------------------------------------------------------------------- /sim/sim_cate.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/sim/sim_cate.py -------------------------------------------------------------------------------- /sim/sim_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/sim/sim_data.py -------------------------------------------------------------------------------- /sim/sim_epi.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/sim/sim_epi.py -------------------------------------------------------------------------------- /sim/sim_invalid_iv.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/sim/sim_invalid_iv.py -------------------------------------------------------------------------------- /sim/sim_link.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/sim/sim_link.py -------------------------------------------------------------------------------- /sim/sim_out.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/sim/sim_out.md -------------------------------------------------------------------------------- /sim/sim_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/sim/sim_test.py -------------------------------------------------------------------------------- /sim/test_elanet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/sim/test_elanet.py -------------------------------------------------------------------------------- /sim/weak_IV.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/statmlben/nonlinear-causal/HEAD/sim/weak_IV.py --------------------------------------------------------------------------------