├── LICENSE.md ├── README.md ├── colab-analysis └── Jackhmmer_vs_MMseqs2_GPU.ipynb └── speed-analysis ├── end-to-end ├── blastp_param.sh ├── diamond-qry_param.sh ├── diamond_param.sh ├── jackhmmer_param.sh ├── mmseqs-kmer-cpu_param.sh ├── mmseqs-ungapped-cpu_param.sh ├── mmseqs-ungapped-gpu_param.sh ├── mmseqs-ungapped-multi-gpu_param.sh └── psiblast_param.sh └── ungapped-kernel ├── mmseqs-ungapped-cpu_kernel.sh ├── mmseqs-ungapped-gpu_kernel.sh └── mmseqs-ungapped-multi-gpu_kernel.sh /LICENSE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/steineggerlab/mmseqs2-gpu-analysis/HEAD/LICENSE.md -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/steineggerlab/mmseqs2-gpu-analysis/HEAD/README.md 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