├── .Rbuildignore ├── .github └── workflows │ └── basic_checks.yaml ├── .gitignore ├── CONTRIBUTING.md ├── DESCRIPTION ├── Dockerfile ├── LICENSE ├── NAMESPACE ├── R └── data.R ├── README.md ├── _pkgdown.yml ├── data-raw └── pasilla.R ├── data └── pasilla.rda ├── inst └── vignettes │ ├── bioc2020tidybulkpipeline-01.png │ ├── tidybulk_logo.png │ └── tidytranscriptomics.bib ├── man └── pasilla.Rd └── vignettes ├── solutions.Rmd ├── supplementary.Rmd └── tidytranscriptomics.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stemangiola/bioc_2020_tidytranscriptomics/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/workflows/basic_checks.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stemangiola/bioc_2020_tidytranscriptomics/HEAD/.github/workflows/basic_checks.yaml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stemangiola/bioc_2020_tidytranscriptomics/HEAD/.gitignore -------------------------------------------------------------------------------- /CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stemangiola/bioc_2020_tidytranscriptomics/HEAD/CONTRIBUTING.md -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stemangiola/bioc_2020_tidytranscriptomics/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stemangiola/bioc_2020_tidytranscriptomics/HEAD/Dockerfile -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stemangiola/bioc_2020_tidytranscriptomics/HEAD/LICENSE -------------------------------------------------------------------------------- /NAMESPACE: -------------------------------------------------------------------------------- 1 | # Generated by roxygen2: do not edit by hand 2 | 3 | -------------------------------------------------------------------------------- /R/data.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stemangiola/bioc_2020_tidytranscriptomics/HEAD/R/data.R -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stemangiola/bioc_2020_tidytranscriptomics/HEAD/README.md -------------------------------------------------------------------------------- /_pkgdown.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stemangiola/bioc_2020_tidytranscriptomics/HEAD/_pkgdown.yml -------------------------------------------------------------------------------- /data-raw/pasilla.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stemangiola/bioc_2020_tidytranscriptomics/HEAD/data-raw/pasilla.R -------------------------------------------------------------------------------- /data/pasilla.rda: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stemangiola/bioc_2020_tidytranscriptomics/HEAD/data/pasilla.rda -------------------------------------------------------------------------------- /inst/vignettes/bioc2020tidybulkpipeline-01.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stemangiola/bioc_2020_tidytranscriptomics/HEAD/inst/vignettes/bioc2020tidybulkpipeline-01.png -------------------------------------------------------------------------------- /inst/vignettes/tidybulk_logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stemangiola/bioc_2020_tidytranscriptomics/HEAD/inst/vignettes/tidybulk_logo.png -------------------------------------------------------------------------------- /inst/vignettes/tidytranscriptomics.bib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stemangiola/bioc_2020_tidytranscriptomics/HEAD/inst/vignettes/tidytranscriptomics.bib -------------------------------------------------------------------------------- /man/pasilla.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stemangiola/bioc_2020_tidytranscriptomics/HEAD/man/pasilla.Rd -------------------------------------------------------------------------------- /vignettes/solutions.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stemangiola/bioc_2020_tidytranscriptomics/HEAD/vignettes/solutions.Rmd -------------------------------------------------------------------------------- /vignettes/supplementary.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stemangiola/bioc_2020_tidytranscriptomics/HEAD/vignettes/supplementary.Rmd -------------------------------------------------------------------------------- /vignettes/tidytranscriptomics.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stemangiola/bioc_2020_tidytranscriptomics/HEAD/vignettes/tidytranscriptomics.Rmd --------------------------------------------------------------------------------