├── Connectivity ├── Misc │ ├── EMG_filterEpoch_noHilbert.m │ ├── README.md │ ├── SIFT_analysis_tutorial.m │ ├── asrTest_remBadTrials.m │ ├── calcPhaseRandConnStats_hiperGator.m │ ├── compareASR_noASR_conn.m │ ├── compare_lo_hi_modOrder.m │ ├── diplotfig.m │ ├── permuteSubjs_numConns.m │ ├── plot_dipoles.m │ └── plot_model_validation_metrics.m ├── README.md ├── chord_diagrams │ ├── README.md │ ├── example_chordPlot.R │ ├── net_conn_stats.R │ ├── net_conn_stats_brainEMG.r │ └── net_conn_stats_emgEmg.r ├── conn_phase_rand_stats.m ├── epochEEGEMG.m ├── plotting_matlab │ ├── README.md │ ├── aveNetwork4Stats.m │ ├── extract_base_conn.m │ ├── plot_conn_ersps.m │ └── regularConn_plot.m └── regularConn_Setup.m ├── LICENSE ├── Preprocessing_pipeline ├── AMICA_15 │ ├── README.md │ ├── amica15.f90 │ ├── amica15_header.f90 │ ├── amica15ub │ ├── amicadefs.param │ ├── commandToBuild_HiPerGator │ ├── eegplugin_amica.m │ ├── funmod2.f90 │ ├── funmod2.mod │ ├── loadmodout12.m │ ├── pop_runamica.m │ └── runamica15.m ├── Grant │ ├── common │ │ ├── Biosemi_original_files │ │ │ ├── Biosemi_256_elp │ │ │ │ └── Biosemi_256.elp │ │ │ └── cap256.sph │ │ ├── ERSP │ │ │ └── mod_std_precomp_v10_2_5_5a.m │ │ ├── SCCN_chan_rej_algs │ │ │ ├── detectnoisychannelts.m │ │ │ └── eeg_badChannelsByCorr.m │ │ ├── SCCN_frame_reject_algs │ │ │ └── eeg_badframes.m │ │ ├── Steve_common │ │ │ ├── format_BadEpchs.m │ │ │ ├── frame_rej_hjh_auto.m │ │ │ ├── mod_pop_autorej.m │ │ │ ├── mod_pop_epochbin.m │ │ │ ├── sync_cut.m │ │ │ └── sync_cut_v2.m │ │ ├── auto_frame_rej_hjh.m │ │ ├── chan_rej.m │ │ ├── chan_rej_hjh.m │ │ ├── dir_list.m │ │ ├── eegchan_listdlg.m │ │ ├── fastsmooth.m │ │ ├── fieldtripdefs.m │ │ ├── fix_sync.m │ │ ├── fix_sync_WMISM.m │ │ ├── fix_sync_WMISM.m~ │ │ ├── frame_rej.m │ │ ├── frame_rej_hjh.m │ │ ├── hnl_chan_rej.m │ │ ├── hnl_convertZebris.asv │ │ ├── hnl_convertZebris.m │ │ ├── hnl_convertZebris128.m │ │ ├── hnl_convertZebris_COG.m │ │ ├── hnl_convertZebris_MISM.m │ │ ├── jgwin │ │ │ ├── get_EEG_event_array.m │ │ │ ├── mod_pop_prop.m │ │ │ └── mod_topoplot.m │ │ ├── load_wgts_spheres.m │ │ ├── loadmodout10.m │ │ ├── mod_chan_rej_hjh.m │ │ ├── mod_std_precomp_v10_2_5_5a.m │ │ ├── mod_topoplot.m~ │ │ ├── mod_topoplot_ranks.m │ │ ├── percentRankChans.m │ │ ├── percentRankChans.m~ │ │ ├── pop_loadmodout10.m │ │ ├── rdir.m │ │ ├── readevents.m │ │ ├── rejPowerBase.m │ │ ├── save_chan_rej_log.m │ │ ├── sync_cut.m~ │ │ └── sync_cut_v2.m │ ├── mod_selectcomps.m │ └── update_EEG.m ├── README.md ├── Step1_EEG_preprocess_CAR_cleanline_noHPF.m ├── Step2_EEG_preprocess_rej_chans.m ├── Step2p5_cleanCCA_EEMDauto.m ├── Step2p5_clean_ASRtest.m ├── Step2p75_prep4ICA.m ├── Step3_EEG_DIPFIT_epoch.m ├── Step4_MultipleSubjs.m ├── Step5_PlotStudyResults.m └── helperFuncs │ ├── EEG_load_CAR_beforePREP.m │ ├── EEG_load_beforePREP.m │ ├── ERSP_bootPlotter.m │ ├── ERSP_bootPlotter_TW.m │ ├── ERSP_bootPlotter_designs.m │ ├── ERSP_bootPlotter_groupStats.m │ ├── MISM_condAbbrevs.m │ ├── Spec_bootPlotter_designs.m │ ├── addViconEvents.m │ ├── addViconEventsFxn.m │ ├── addViconEvents_gaitEvents.m │ ├── addViconEvents_gaitEventsFxn.m │ ├── addViconEvents_pull.m │ ├── addViconEvents_pullEventsFxn.m │ ├── cca_EEMDrem_1stIMF.m │ ├── checkDIPFIT.m │ ├── createSFPcorrect.m │ ├── createSFPcorrect.m~ │ ├── diplotfig.m │ ├── emdAnalysis │ ├── CCA_cleanChans_smp.m │ ├── bsscca.m │ ├── mcca.m │ ├── runCCA.m │ ├── runCCA.m~ │ ├── runCCA_multConds.m │ └── runEMD_test.m │ ├── epochDIPFITData.m │ ├── epochDIPFITDataPulls.m │ ├── epochDIPFITData_Math540mod.m │ ├── epochDIPFITData_gaitEvents.m │ ├── epochDIPFITData_gaitEvents_offBeam.m │ ├── epochDIPFITData_gaitEvents_onBeam.m │ ├── filterSizeStr.m │ ├── findInd_largestFile.m │ ├── fix_sync_ViconEvents.m │ ├── getManuscriptNums │ ├── hnl_convertZebris_WMISM.m │ ├── hnl_convertZebris_WMISM.m~ │ ├── interpolEEG.m │ ├── mergeEEGsetsMISMCombs.m │ ├── mergeSets_HPF.m │ ├── mod_pop_runemd.m │ ├── moveElecLocs.m │ ├── reformatEventStruct.m │ 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