├── .Rbuildignore ├── .gitignore ├── .travis.yml ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R ├── RcppExports.R ├── datasim.R ├── misc.R ├── mixsqp-package.R ├── mixsqp.R ├── objective.R ├── tacks.R ├── tsvd.R └── zzz.R ├── README.md ├── _pkgdown.yml ├── appveyor.yml ├── data └── tacks.RData ├── docs ├── 404.html ├── LICENSE-text.html ├── LICENSE.html ├── articles │ ├── footer.html │ ├── header.html │ ├── index.html │ ├── mixsqp-intro.html │ └── mixsqp-intro_files │ │ ├── elevate-section-attrs-2.0 │ │ └── elevate-section-attrs.js │ │ ├── figure-html │ │ └── plot-sqp-progress-1.png │ │ └── jquery-1.11.3 │ │ └── jquery.min.js ├── authors.html ├── docsearch.css ├── docsearch.js ├── index.html ├── jquery.sticky-kit.min.js ├── link.svg ├── pkgdown.css ├── pkgdown.js ├── pkgdown.yml └── reference │ ├── index.html │ ├── mixkwdual.html │ ├── mixobjective.html │ ├── mixsqp-package.html │ ├── mixsqp.html │ ├── simulatemixdata.html │ ├── tacks-1.png │ └── tacks.html ├── inst ├── CITATION └── code │ └── test.rmosek.R ├── man ├── mixobjective.Rd ├── mixsqp-package.Rd ├── mixsqp.Rd ├── simulatemixdata.Rd └── tacks.Rd ├── mixsqp.Rproj ├── pre-commit ├── src ├── Makevars ├── Makevars.win ├── RcppExports.cpp ├── misc.cpp ├── misc.h ├── mixem.cpp ├── mixem.h ├── mixsqp.cpp ├── objective.cpp └── objective.h ├── tests ├── testthat.R └── testthat │ ├── ashr.binom.example.RData │ ├── ashr.example.RData │ ├── flashr.example.RData │ ├── mashr.example.RData │ ├── npmle.RData │ ├── smashr.example.RData │ ├── test_mixsqp.R │ └── test_simulatemixdata.R └── vignettes └── mixsqp-intro.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stephenslab/mixsqp/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 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