├── .dockerignore ├── .gitignore ├── Dockerfile ├── LICENSE ├── Makefile ├── README.md ├── make_IGV_snapshots.def ├── make_IGV_snapshots.py ├── regions.bed ├── regions_nf4.bed ├── report ├── Makefile ├── README.md ├── compile_Rmd_report.R ├── compile_Rnw_report.sh ├── report.Rmd └── report.Rnw └── test_data ├── test_alignments.bam ├── test_alignments.bam.bai ├── test_alignments2.bam └── test_alignments2.bam.bai /.dockerignore: -------------------------------------------------------------------------------- 1 | *.sif 2 | .dockerignore 3 | IGV_2.4.10/ 4 | *.zip 5 | igv.jar 6 | snapshots/ 7 | -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stevekm/IGV-snapshot-automator/HEAD/.gitignore -------------------------------------------------------------------------------- /Dockerfile: 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