├── .dockerignore ├── .gitattributes ├── .gitignore ├── .readthedocs.yaml ├── LICENSE ├── MANIFEST.in ├── README.md ├── RELEASE_NOTES.md ├── dev ├── install_scripts │ ├── dms_structure_install.sh │ ├── em_denoise_install.sh │ ├── hydronet_deps.txt │ ├── hydronet_install.sh │ ├── mnist_tf_keras_install.sh │ ├── optical_damage_install.sh │ ├── slstr_cloud_install.sh │ ├── stemdl_classification_install.sh │ └── synthetic_regression_install.sh └── tools │ ├── build_release.py │ ├── check_images.py │ ├── embed_version.py │ ├── gen_bench_ds.py │ ├── p_test.py │ └── package_release.py ├── requirements.txt ├── sciml_bench ├── __init__.py ├── benchmarks │ ├── examples │ │ ├── mnist_mxnet │ │ │ └── mnist_mxnet.py │ │ ├── mnist_tf_keras │ │ │ └── mnist_tf_keras.py │ │ ├── mnist_torch │ │ │ ├── mnist_torch.py │ │ │ └── mnist_torch_misc.py │ │ └── mnist_torch_horovod │ │ │ ├── impl_mnist_torch.py │ │ │ └── mnist_torch.py │ ├── science │ │ ├── dms_structure │ │ │ ├── __init__.py │ │ │ ├── dms_inference_dataset.py │ │ │ ├── dms_model.py │ │ │ ├── dms_structure.py │ │ │ └── dms_train.py │ │ ├── em_denoise │ │ │ ├── __init__.py │ │ │ ├── em_denoise.py │ │ │ ├── em_denoise_model.py │ │ │ └── em_denoise_util.py │ │ ├── hydronet │ │ │ ├── hydronet.py │ │ │ └── utils │ │ │ │ ├── calc.py │ │ │ │ ├── data_ddp.py │ │ │ │ ├── datasets.py │ │ │ │ ├── eval.py │ │ │ │ ├── hooks.py │ │ │ │ ├── infer.py │ │ │ │ ├── models_ddp.py │ │ │ │ └── train_ddp.py │ │ ├── optical_damage │ │ │ ├── model.py │ │ │ ├── optical_damage.py │ │ │ └── utils.py │ │ ├── slstr_cloud │ │ │ ├── __init__.py │ │ │ ├── constants.py │ │ │ ├── data_loader.py │ │ │ ├── inference.py │ │ │ ├── model.py │ │ │ ├── slstr_cloud.py │ │ │ └── train.py │ │ └── stemdl_classification │ │ │ └── stemdl_classification.py │ └── synthetic │ │ └── synthetic_regression │ │ └── synthetic_regression.py ├── core │ ├── __init__.py │ ├── benchmark.py │ ├── command.py │ ├── config.py │ ├── dataset.py │ ├── runtime.py │ ├── statics.py │ ├── system.py │ ├── tensorflow.py │ └── utils.py ├── docs │ ├── markdown │ │ ├── bench_register_list.md │ │ ├── benchmarks │ │ │ ├── dms_structure.md │ │ │ ├── em_denoise.md │ │ │ ├── hydronet.md │ │ │ ├── optical_damage.md │ │ │ ├── slstr_cloud.md │ │ │ ├── stemdl_classification.md │ │ │ └── synthetic_regression.md │ │ ├── benchmarks_summary.md │ │ ├── credits.md │ │ ├── datasets │ │ │ ├── cloud_slstr_ds1.md │ │ │ ├── cloud_slstr_ds2.md │ │ │ ├── dms_sim.md │ │ │ ├── em_graphene_sim.md │ │ │ ├── hydronet_ds1.md │ │ │ ├── inelastic_ds1.md │ │ │ ├── optical_damage_ds1.md │ │ │ ├── stemdl_ds1.md │ │ │ └── stemdl_reconst_ds1.md │ │ ├── datasets_summary.md │ │ ├── index.md │ │ ├── main │ │ │ ├── api.md │ │ │ ├── configuration.md │ │ │ ├── contributing.md │ │ │ ├── faq.md │ │ │ ├── installation.md │ │ │ ├── introduction.md │ │ │ ├── tutorial.md │ │ │ └── usage.md │ │ ├── misc │ │ │ └── example_logs_outputs │ │ │ │ ├── arguments_used.yml │ │ │ │ ├── model_weights.h5 │ │ │ │ └── training_history.yml │ │ ├── publications.md │ │ └── resources │ │ │ ├── entry.png │ │ │ ├── logo.png │ │ │ └── tutorial │ │ │ ├── about_output.png │ │ │ ├── benchmark_install_output_1.png │ │ │ ├── download_output_1.png │ │ │ ├── download_output_2.png │ │ │ ├── help_output.png │ │ │ ├── info_output_em_denoise.png │ │ │ ├── info_output_em_graphene_sim.png │ │ │ ├── list_output_1.png │ │ │ ├── list_output_2.png │ │ │ ├── list_output_3_verify.png │ │ │ ├── list_output_4_deps.png │ │ │ ├── list_output_em_denoise.png │ │ │ ├── run_screen_1.png │ │ │ └── version_output.png │ ├── mkdocs.yml │ └── requirements.txt └── etc │ ├── configs │ └── config.yml │ ├── recipes │ ├── Dockerfile │ ├── ompi4.def │ └── sciml-bench.def │ ├── templates │ └── example_benchmark.py │ └── utils │ ├── README │ └── dataDownload.sh └── setup.py /.dockerignore: -------------------------------------------------------------------------------- 1 | config 2 | *.sif 3 | -------------------------------------------------------------------------------- /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/.gitattributes -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/.gitignore -------------------------------------------------------------------------------- /.readthedocs.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/.readthedocs.yaml -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- 1 | recursive-include sciml_bench * 2 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/README.md -------------------------------------------------------------------------------- /RELEASE_NOTES.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/RELEASE_NOTES.md -------------------------------------------------------------------------------- /dev/install_scripts/dms_structure_install.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/dev/install_scripts/dms_structure_install.sh -------------------------------------------------------------------------------- /dev/install_scripts/em_denoise_install.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/dev/install_scripts/em_denoise_install.sh -------------------------------------------------------------------------------- /dev/install_scripts/hydronet_deps.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/dev/install_scripts/hydronet_deps.txt -------------------------------------------------------------------------------- /dev/install_scripts/hydronet_install.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/dev/install_scripts/hydronet_install.sh -------------------------------------------------------------------------------- /dev/install_scripts/mnist_tf_keras_install.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/dev/install_scripts/mnist_tf_keras_install.sh -------------------------------------------------------------------------------- /dev/install_scripts/optical_damage_install.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/dev/install_scripts/optical_damage_install.sh -------------------------------------------------------------------------------- /dev/install_scripts/slstr_cloud_install.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/dev/install_scripts/slstr_cloud_install.sh -------------------------------------------------------------------------------- /dev/install_scripts/stemdl_classification_install.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/dev/install_scripts/stemdl_classification_install.sh -------------------------------------------------------------------------------- /dev/install_scripts/synthetic_regression_install.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/dev/install_scripts/synthetic_regression_install.sh -------------------------------------------------------------------------------- /dev/tools/build_release.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/dev/tools/build_release.py -------------------------------------------------------------------------------- /dev/tools/check_images.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/dev/tools/check_images.py -------------------------------------------------------------------------------- /dev/tools/embed_version.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/dev/tools/embed_version.py -------------------------------------------------------------------------------- /dev/tools/gen_bench_ds.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/dev/tools/gen_bench_ds.py -------------------------------------------------------------------------------- /dev/tools/p_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/dev/tools/p_test.py -------------------------------------------------------------------------------- /dev/tools/package_release.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/dev/tools/package_release.py -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/requirements.txt -------------------------------------------------------------------------------- /sciml_bench/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/__init__.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/examples/mnist_mxnet/mnist_mxnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/examples/mnist_mxnet/mnist_mxnet.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/examples/mnist_tf_keras/mnist_tf_keras.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/examples/mnist_tf_keras/mnist_tf_keras.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/examples/mnist_torch/mnist_torch.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/examples/mnist_torch/mnist_torch.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/examples/mnist_torch/mnist_torch_misc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/examples/mnist_torch/mnist_torch_misc.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/examples/mnist_torch_horovod/impl_mnist_torch.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/examples/mnist_torch_horovod/impl_mnist_torch.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/examples/mnist_torch_horovod/mnist_torch.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/examples/mnist_torch_horovod/mnist_torch.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/dms_structure/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/dms_structure/dms_inference_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/dms_structure/dms_inference_dataset.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/dms_structure/dms_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/dms_structure/dms_model.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/dms_structure/dms_structure.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/dms_structure/dms_structure.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/dms_structure/dms_train.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/dms_structure/dms_train.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/em_denoise/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/em_denoise/em_denoise.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/em_denoise/em_denoise.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/em_denoise/em_denoise_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/em_denoise/em_denoise_model.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/em_denoise/em_denoise_util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/em_denoise/em_denoise_util.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/hydronet/hydronet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/hydronet/hydronet.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/hydronet/utils/calc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/hydronet/utils/calc.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/hydronet/utils/data_ddp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/hydronet/utils/data_ddp.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/hydronet/utils/datasets.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/hydronet/utils/datasets.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/hydronet/utils/eval.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/hydronet/utils/eval.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/hydronet/utils/hooks.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/hydronet/utils/hooks.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/hydronet/utils/infer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/hydronet/utils/infer.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/hydronet/utils/models_ddp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/hydronet/utils/models_ddp.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/hydronet/utils/train_ddp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/hydronet/utils/train_ddp.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/optical_damage/model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/optical_damage/model.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/optical_damage/optical_damage.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/optical_damage/optical_damage.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/optical_damage/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/optical_damage/utils.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/slstr_cloud/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/slstr_cloud/constants.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/slstr_cloud/constants.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/slstr_cloud/data_loader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/slstr_cloud/data_loader.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/slstr_cloud/inference.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/slstr_cloud/inference.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/slstr_cloud/model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/slstr_cloud/model.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/slstr_cloud/slstr_cloud.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/slstr_cloud/slstr_cloud.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/slstr_cloud/train.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/slstr_cloud/train.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/science/stemdl_classification/stemdl_classification.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/science/stemdl_classification/stemdl_classification.py -------------------------------------------------------------------------------- /sciml_bench/benchmarks/synthetic/synthetic_regression/synthetic_regression.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/benchmarks/synthetic/synthetic_regression/synthetic_regression.py -------------------------------------------------------------------------------- /sciml_bench/core/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /sciml_bench/core/benchmark.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/core/benchmark.py -------------------------------------------------------------------------------- /sciml_bench/core/command.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/core/command.py -------------------------------------------------------------------------------- /sciml_bench/core/config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/core/config.py -------------------------------------------------------------------------------- /sciml_bench/core/dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/core/dataset.py -------------------------------------------------------------------------------- /sciml_bench/core/runtime.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/core/runtime.py -------------------------------------------------------------------------------- /sciml_bench/core/statics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/core/statics.py -------------------------------------------------------------------------------- /sciml_bench/core/system.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/core/system.py -------------------------------------------------------------------------------- /sciml_bench/core/tensorflow.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/core/tensorflow.py -------------------------------------------------------------------------------- /sciml_bench/core/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/core/utils.py -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/bench_register_list.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/bench_register_list.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/benchmarks/dms_structure.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/benchmarks/dms_structure.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/benchmarks/em_denoise.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/benchmarks/em_denoise.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/benchmarks/hydronet.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/benchmarks/hydronet.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/benchmarks/optical_damage.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/benchmarks/optical_damage.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/benchmarks/slstr_cloud.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/benchmarks/slstr_cloud.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/benchmarks/stemdl_classification.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/benchmarks/stemdl_classification.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/benchmarks/synthetic_regression.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/benchmarks/synthetic_regression.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/benchmarks_summary.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/benchmarks_summary.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/credits.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/credits.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/datasets/cloud_slstr_ds1.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/datasets/cloud_slstr_ds1.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/datasets/cloud_slstr_ds2.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/datasets/cloud_slstr_ds2.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/datasets/dms_sim.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/datasets/dms_sim.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/datasets/em_graphene_sim.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/datasets/em_graphene_sim.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/datasets/hydronet_ds1.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/datasets/hydronet_ds1.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/datasets/inelastic_ds1.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/datasets/inelastic_ds1.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/datasets/optical_damage_ds1.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/datasets/optical_damage_ds1.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/datasets/stemdl_ds1.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/datasets/stemdl_ds1.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/datasets/stemdl_reconst_ds1.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/datasets/stemdl_reconst_ds1.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/datasets_summary.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/datasets_summary.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/index.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/main/api.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/main/api.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/main/configuration.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/main/configuration.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/main/contributing.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/main/contributing.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/main/faq.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/main/faq.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/main/installation.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/main/installation.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/main/introduction.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/main/introduction.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/main/tutorial.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/main/tutorial.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/main/usage.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/main/usage.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/misc/example_logs_outputs/arguments_used.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/misc/example_logs_outputs/arguments_used.yml -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/misc/example_logs_outputs/model_weights.h5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/misc/example_logs_outputs/model_weights.h5 -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/misc/example_logs_outputs/training_history.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/misc/example_logs_outputs/training_history.yml -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/publications.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/publications.md -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/resources/entry.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/resources/entry.png -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/resources/logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/resources/logo.png -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/resources/tutorial/about_output.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/resources/tutorial/about_output.png -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/resources/tutorial/benchmark_install_output_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/resources/tutorial/benchmark_install_output_1.png -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/resources/tutorial/download_output_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/resources/tutorial/download_output_1.png -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/resources/tutorial/download_output_2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/resources/tutorial/download_output_2.png -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/resources/tutorial/help_output.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/resources/tutorial/help_output.png -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/resources/tutorial/info_output_em_denoise.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/resources/tutorial/info_output_em_denoise.png -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/resources/tutorial/info_output_em_graphene_sim.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/resources/tutorial/info_output_em_graphene_sim.png -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/resources/tutorial/list_output_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/resources/tutorial/list_output_1.png -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/resources/tutorial/list_output_2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/resources/tutorial/list_output_2.png -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/resources/tutorial/list_output_3_verify.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/resources/tutorial/list_output_3_verify.png -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/resources/tutorial/list_output_4_deps.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/resources/tutorial/list_output_4_deps.png -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/resources/tutorial/list_output_em_denoise.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/resources/tutorial/list_output_em_denoise.png -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/resources/tutorial/run_screen_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/resources/tutorial/run_screen_1.png -------------------------------------------------------------------------------- /sciml_bench/docs/markdown/resources/tutorial/version_output.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/markdown/resources/tutorial/version_output.png -------------------------------------------------------------------------------- /sciml_bench/docs/mkdocs.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/mkdocs.yml -------------------------------------------------------------------------------- /sciml_bench/docs/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/docs/requirements.txt -------------------------------------------------------------------------------- /sciml_bench/etc/configs/config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/etc/configs/config.yml -------------------------------------------------------------------------------- /sciml_bench/etc/recipes/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/etc/recipes/Dockerfile -------------------------------------------------------------------------------- /sciml_bench/etc/recipes/ompi4.def: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/etc/recipes/ompi4.def -------------------------------------------------------------------------------- /sciml_bench/etc/recipes/sciml-bench.def: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/etc/recipes/sciml-bench.def -------------------------------------------------------------------------------- /sciml_bench/etc/templates/example_benchmark.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/etc/templates/example_benchmark.py -------------------------------------------------------------------------------- /sciml_bench/etc/utils/README: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/etc/utils/README -------------------------------------------------------------------------------- /sciml_bench/etc/utils/dataDownload.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/sciml_bench/etc/utils/dataDownload.sh -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stfc-sciml/sciml-bench/HEAD/setup.py --------------------------------------------------------------------------------