├── .gitignore ├── CITATION.cff ├── LICENSE ├── README.md ├── Test ├── .gitignore ├── Makefile ├── TestChangeStatsAttrBipartite │ ├── .gitignore │ ├── Makefile │ ├── README │ ├── attrbipartiteStats.c │ ├── attrbipartiteStats.h │ ├── bpnet_A12000_B4000_attr_test_results_baseline.txt │ ├── bpnet_A12000_B4000_nodepairs.txt │ ├── bpnet_A12000_B4000_sparse_sim870000000.net │ ├── compareStatsValues.py │ ├── run_all_attr_bipartite_tests.sh │ ├── run_test_b1nodematch_bpnet_A12000_B4000_attr.sh │ ├── run_test_bpnet_A12000_B4000_attr.sh │ ├── run_test_diff_stats_change_stats_attr_bipartite.sh │ ├── run_test_stats_sum_change_stats_attr_bipartite.sh │ ├── statnet_b1nodematch_baseline.R │ ├── statnet_b1nodematch_baseline.out │ ├── testBipartiteAlphaBetaChangeStatsMain.c │ ├── testChangeStatsAttrBipartiteMain.c │ ├── testDiffStatsChangeStatsAttrBipartiteMain.c │ ├── testStatsSumChangeStatsAttrBipartiteMain.c │ └── twopath_binattr.txt ├── TestChangeStatsBipartite │ ├── .gitignore │ ├── Makefile │ ├── README │ ├── bipartiteStats.c │ ├── bipartiteStats.h │ ├── bpnet_A6000_B750_nodepairs.txt │ ├── bpnet_A6000_B750_test_results_baseline.txt │ ├── chain_bipartite.net │ ├── convert_eps_to_png_and_crop.sh │ ├── convert_robertson_matrix_to_pajek.R │ ├── convert_robertson_matrix_to_pajek.out │ ├── data │ │ ├── README.txt │ │ ├── robertson_1929_matr.txt │ │ ├── robertson_1929_pla.txt │ │ └── robertson_1929_pol.txt │ ├── fourcycle3_bipartite.net │ ├── fourcycle3_leaf_bipartite.net │ ├── fourcycle3_leaf_revmode_bipartite.net │ ├── fourcycle3_open_bipartite.net │ ├── fourcycle3_revmode_bipartite.net │ ├── fourcycle4_fourcycle_components_bipartite.net │ ├── fourcycle6_bipartite.net │ ├── fourcycle_bipartite.net │ ├── fourfan3_bipartite.net │ ├── genRandomNodeNumsBipartite.py │ ├── grid_bipartite.net │ ├── grid_open_bipartite.net │ ├── inouye_pyke_pollinators_nodepairs.txt │ ├── inouye_pyke_pollinators_snowball_sample_2_waves_seed_3.net │ ├── inouye_pyke_pollinators_test_results_baseline.txt │ ├── makeExampleNetworkTwoComponents.R │ ├── makeExampleNetworkTwoComponents.out │ ├── makeExampleNetworks.R │ ├── makeExampleNetworks.out │ ├── make_example_networks.sh │ ├── netfiles.sh │ ├── opsahl_bipartite.net │ ├── pw1_bipartite.net │ ├── pw2_bipartite.net │ ├── pw3_bipartite.net │ ├── ring_bipartite.net │ ├── robertson_pollinators_bipartite.net │ ├── robertson_pollinators_nodepairs.txt │ ├── robertson_pollinators_test_results_baseline.txt │ ├── run_all_bipartite_tests.sh │ ├── run_test_bpnet_A6000_B750.sh │ ├── run_test_diff_stats_change_stats_bipartite.sh │ ├── run_test_inouye_pyke_pollinators.sh │ ├── run_test_robertson_pollinators.sh │ ├── run_test_stats_sum_change_stats_bipartite.sh │ ├── star_bipartite.net │ ├── testChangeStatsBipartiteMain.c │ ├── testDiffStatsChangeStatsBipartiteMain.c │ ├── testStatsSumChangeStatsBipartiteMain.c │ └── twopath_bipartite.net ├── TestChangeStatsDirected │ ├── .gitignore │ ├── Makefile │ ├── README │ ├── genRandomNodeNums.py │ ├── polblogs_nodepairs.txt │ ├── polblogs_test_results_baseline.txt │ ├── run_test_polblogs.sh │ └── testChangeStatsDirectedMain.c ├── TestChangeStatsUndirected │ ├── .gitignore │ ├── Makefile │ ├── README │ ├── netfiles.sh │ ├── netscience_edgelist.txt │ ├── netscience_nodepairs.txt │ ├── netscience_test_results_baseline.txt │ ├── run_all_undirected_tests.sh │ ├── run_test_diff_stats_change_stats_undirected.sh │ ├── run_test_netscience.sh │ ├── run_test_stats_sum_change_stats_undirected.sh │ ├── testChangeStatsUndirectedMain.c │ ├── testDiffStatsChangeStatsUndirectedMain.c │ ├── testStatsSumChangeStatsUndirectedMain.c │ ├── undirectedStats.c │ └── undirectedStats.h ├── TestRandom │ ├── .gitignore │ ├── Makefile │ ├── checkUniform.R │ ├── run_test_random.sh │ └── testRandom.c ├── TestSetFunctions │ ├── .gitignore │ ├── Makefile │ ├── checkSetFunctions.py │ ├── run_test_sets.sh │ └── testSetFunctions.c ├── run_all_tests.sh └── run_all_tests_slurm_script.sh ├── examples ├── .gitignore ├── README ├── bipartite │ ├── .gitignore │ ├── inouye_pyke_pollinators │ │ ├── .gitignore │ │ ├── README │ │ ├── config_inouye_pyke_pollinators_basic.txt │ │ ├── config_inouye_pyke_pollinators_ifd.txt │ │ ├── config_inouye_pyke_pollinators_ifd_altk4cycles.txt │ │ ├── config_inouye_pyke_pollinators_ifd_altkcycles.txt │ │ ├── config_inouye_pyke_pollinators_tnt.txt │ │ ├── convert_inouye_pike_matrix_to_pajek.R │ │ ├── convert_inouye_pike_matrix_to_pajek.out │ │ ├── data │ │ │ ├── README.txt │ │ │ ├── bipartite2adjmatrix.py │ │ │ ├── bipartitematrix.py │ │ │ ├── ino_matr_f.txt │ │ │ ├── inouye_1988.xls │ │ │ └── inouye_matrix.txt │ │ ├── inouye_pyke_pollinators_bipartite.net │ │ ├── makeInouyePykeVisualizationAndStats.R │ │ ├── rerun_simulation_diagnostic_plots_slurm_script.sh │ │ ├── run_EstimNetDirected_inouye_pyke_pollinators_altk4cycles_slurm_script.sh │ │ ├── run_EstimNetDirected_inouye_pyke_pollinators_altkcycles_slurm_script.sh │ │ ├── run_EstimNetDirected_inouye_pyke_pollinators_slurm_script.sh │ │ ├── run_SimulatERGM_gof_inouye_pyke_pollinators_altk4cycles_slurm_script.sh │ │ ├── run_SimulatERGM_gof_inouye_pyke_pollinators_altkcycles_slurm_script.sh │ │ ├── run_SimulatERGM_gof_inouye_pyke_pollinators_slurm_script.sh │ │ ├── run_plotEstimNetDirectedSimFit_inouye_pyke_pollinators_R_slurm_script.sh │ │ ├── run_plotEstimNetDirectedSimFit_inouye_pyke_pollinators_altk4cycles_R_slurm_script.sh │ │ ├── run_plotEstimNetDirectedSimFit_inouye_pyke_pollinators_altkcycles_R_slurm_script.sh │ │ ├── run_plot_GofSimFit_inouye_pyke_pollinators_R_slurm_script.sh │ │ ├── run_plot_GofSimFit_inouye_pyke_pollinators_altk4cycles_R_slurm_script.sh │ │ ├── run_plot_GofSimFit_inouye_pyke_pollinators_altkcycles_R_slurm_script.sh │ │ ├── submit_inouye_pyke_pollinators_altk4cycles_jobs.sh │ │ ├── submit_inouye_pyke_pollinators_altkcycles_jobs.sh │ │ └── submit_inouye_pyke_pollinators_jobs.sh │ ├── robertson_pollinators │ │ ├── .gitignore │ │ ├── README │ │ ├── config_robertson_pollinators_ifd.txt │ │ ├── run_EstimNetDirected_robertson_pollinators_slurm_script.sh │ │ ├── run_SimulatERGM_gof_robertson_pollinators_slurm_script.sh │ │ ├── run_plotEstimNetDirectedSimFit_robertson_pollinators_R_slurm_script.sh │ │ ├── run_plot_GofSimFit_robertson_pollinators_R_slurm_script.sh │ │ └── submit_robertson_pollinators_jobs.sh │ ├── simulated │ │ ├── .gitignore │ │ ├── README │ │ ├── bpnet_A12000_B4000_attrs_sim830000000.net │ │ ├── bpnet_A12000_B4000_sparse_sim770000000.net │ │ ├── bpnet_A6000_B750_sparse_sim100000000.net │ │ ├── bpnet_A750_B250_sim777000000.net │ │ ├── config_bipartite_A12000_B4000_attrs_sim_ifd.txt │ │ ├── config_bipartite_A12000_B4000_attrs_sim_tnt.txt │ │ ├── config_bipartite_A12000_B4000_attrs_sim_tnt_b1nodematch.txt │ │ ├── config_bipartite_A12000_B4000_sparse_sim_ifd.txt │ │ ├── config_bipartite_A6000_B750_sparse_sim_ifd.txt │ │ ├── config_bipartite_A6000_B750_sparse_sim_tnt.txt │ │ ├── config_bipartite_A750_B250_sparse_sim_ifd.txt │ │ ├── convertSimulatedNetwork_A12000_B4000_attrs.R │ │ ├── convertSimulatedNetwork_A12000_B4000_sparse.R │ │ ├── convertSimulatedNetwork_A6000_B750_sparse.R │ │ ├── run_EstimNetDirected_example_A12000_B4000_attrs_sim_ifd_slurm_script.sh │ │ ├── run_EstimNetDirected_example_A12000_B4000_attrs_sim_tnt_b1nodematch_slurm_script.sh │ │ ├── run_EstimNetDirected_example_A12000_B4000_attrs_sim_tnt_slurm_script.sh │ │ ├── run_EstimNetDirected_example_A12000_B4000_sparse_sim_ifd_slurm_script.sh │ │ ├── run_EstimNetDirected_example_A6000_B750_sparse_sim_ifd_slurm_script.sh │ │ ├── run_EstimNetDirected_example_A6000_B750_sparse_sim_tnt_slurm_script.sh │ │ ├── run_EstimNetDirected_example_A750_B250_sparse_sim_ifd_slurm_script.sh │ │ ├── run_SimulationGoF_example_A12000_B4000_attrs_sim_tnt_b1nodematch_slurm_script.sh │ │ ├── run_SimulationGoF_example_A12000_B4000_sparse_sim_ifd_slurm_script.sh │ │ ├── run_SimulationGoF_example_A6000_B750_sparse_sim_ifd_slurm_script.sh │ │ ├── run_SimulationGoF_example_A750_B250_sparse_sim_ifd_slurm_script.sh │ │ ├── run_visualizeSimulatedNetworks_R_slurm_script.sh │ │ ├── sample-statistics-A12000_B4000_attrs_sim830000000.txt │ │ ├── sample-statistics-A12000_B4000_sparse_sim770000000.txt │ │ ├── sample-statistics-A6000_B750_sparse_sim100000000.txt │ │ └── visualizeSimulatedGraphs.R │ └── simulation │ │ ├── .gitignore │ │ ├── README │ │ ├── binattrA.txt │ │ ├── binattrAP.txt │ │ ├── binattrP.txt │ │ ├── binattr_all.txt │ │ ├── catattrA.txt │ │ ├── catattrAP.txt │ │ ├── catattrP.txt │ │ ├── catattr_all.txt │ │ ├── conattrA.txt │ │ ├── conattrAP.txt │ │ ├── conattrP.txt │ │ ├── conattr_all.txt │ │ ├── config_sim_bipartite_FourCyclesNodePower_Anegative_Bnegative.txt │ │ ├── config_sim_bipartite_FourCyclesNodePower_Anegative_Bpositive.txt │ │ ├── config_sim_bipartite_FourCyclesNodePower_Apositive_Bnegative.txt │ │ ├── config_sim_bipartite_FourCyclesNodePower_Apositive_Bpositive.txt │ │ ├── config_sim_bipartite_FourCyclesNodePower_Apositive_Bzero.txt │ │ ├── config_sim_bipartite_FourCyclesNodePower_Azero_Bpositive.txt │ │ ├── config_sim_bipartite_FourCyclesNodePower_Azero_Bzero.txt │ │ ├── config_sim_bipartite_asymmetric_FourCyclesNodePower_Anegative_Bnegative.txt │ │ ├── config_sim_bipartite_asymmetric_FourCyclesNodePower_Anegative_Bpositive.txt │ │ ├── config_sim_bipartite_asymmetric_FourCyclesNodePower_Apositive_Bnegative.txt │ │ ├── config_sim_bipartite_asymmetric_FourCyclesNodePower_Apositive_Bpositive.txt │ │ ├── config_sim_bipartite_asymmetric_FourCyclesNodePower_Apositive_Bzero.txt │ │ ├── config_sim_bipartite_asymmetric_FourCyclesNodePower_Azero_Bpositive.txt │ │ ├── config_sim_bipartite_asymmetric_FourCyclesNodePower_Azero_Bzero.txt │ │ ├── config_sim_bipartite_example_A12000_B4000_attrs_tnt.txt │ │ ├── config_sim_bipartite_example_A12000_B4000_bin_cont_attrs_tnt.txt │ │ ├── config_sim_bipartite_example_A12000_B4000_bin_cont_cat_attrs_tnt.txt │ │ ├── config_sim_bipartite_example_A12000_B4000_bin_cont_cat_b1nodematchattrs_tnt.txt │ │ ├── config_sim_bipartite_example_A12000_B4000_sparse_tnt.txt │ │ ├── config_sim_bipartite_example_A6000_B750_ifd.txt │ │ ├── config_sim_bipartite_example_A6000_B750_tnt.txt │ │ ├── config_sim_bipartite_example_basic.txt │ │ ├── config_sim_bipartite_example_tnt.txt │ │ ├── convert_bpnet_attrs_to_estimnetdirected_format.R │ │ ├── make_asymmetric_unique_bipartite_nodes_count_table.sh │ │ ├── plot_BipartiteFourCyclesNodePower_simulation_graph_visualizations.R │ │ ├── plot_BipartiteFourCyclesNodePower_simulation_results.R │ │ ├── plot_asymmetric_BipartiteFourCyclesNodePower_simulation_graph_visualizations.R │ │ ├── plot_asymmetric_BipartiteFourCyclesNodePower_simulation_results.R │ │ ├── plot_asymmetric_BipartiteFourCyclesNodePower_simulation_results_uniquenodes.R │ │ ├── run_SimulateERGM_BipartiteFourCyclesNodePower_examples.sh │ │ ├── run_SimulateERGM_asymmetric_BipartiteFourCyclesNodePower_examples.sh │ │ ├── run_SimulateERGM_bipartite_Example_A12000_B4000_attrs_tnt_slurm_script.sh │ │ ├── run_SimulateERGM_bipartite_Example_A12000_B4000_bin_cont_cat_attrs_tnt_slurm_script.sh │ │ └── run_make_asymmetric_unique_bipartite_nodes_count_table.sh ├── config_example.txt ├── config_example_contattr.txt ├── config_example_contattr_ifd.txt ├── config_example_contattr_tnt.txt ├── config_example_ifd.txt ├── config_example_ifd_allowloops.txt ├── config_example_tnt.txt ├── config_example_use_binary_as_categorical.txt ├── config_polblogs.txt ├── config_polblogs_ifd.txt ├── config_polblogs_ifd_borisenko.txt ├── config_setattr_example.txt ├── continuousAttributes_n2000.txt ├── run_EstimNetDirected_arrays_example_contattr_tnt_slurm_script.sh ├── run_EstimNetDirected_example_contattr_slurm_script.sh ├── run_EstimNetDirected_example_ozstar_slurm_script.sh ├── run_EstimNetDirected_example_slurm_script.sh ├── run_EstimNetDirected_hashtables_example_contattr_tnt_slurm_script.sh ├── run_EstimNetDirected_hashtables_polblogs_slurm_script.sh ├── run_EstimNetDirected_ifd_allowloops_example_slurm_script.sh ├── run_EstimNetDirected_ifd_example_slurm_script.sh ├── run_EstimNetDirected_notables_example_contattr_tnt_slurm_script.sh ├── run_EstimNetDirected_notables_polblogs_slurm_script.sh ├── run_EstimNetDirected_polblogs_borisenko_slurm_script.sh ├── run_EstimNetDirected_polblogs_ifd_slurm_script.sh ├── run_EstimNetDirected_polblogs_slurm_script.sh ├── run_EstimNetDirected_tnt_example_slurm_script.sh ├── run_R_scripts_example_contattr_tnt_slurm_script.sh ├── run_SimulateERGM_estimated_polblogs_slurm_script.sh ├── run_SimulateERGM_example_binattr_slurm_script.sh ├── run_SimulateERGM_example_estimated_binattr_slurm_script.sh ├── run_SimulateERGM_example_estimated_contattr_slurm_script.sh ├── run_SimulateERGM_example_ifd_slurm_script.sh ├── run_SimulateERGM_example_slurm_script.sh ├── run_SimulateERGM_example_tnt_slurm_script.sh ├── run_SimulateERGM_gof_example_ifd_allowloops_slurm_script.sh ├── run_SimulateERGM_gof_example_ifd_slurm_script.sh ├── run_SimulateERGM_hashtables_example_tnt_slurm_script.sh ├── sample_statistics_n1000_directed_binattr_sim620000000_loopsadded.txt ├── sample_statistics_n2000_directed_cont_sim7920000000.txt ├── sampled │ ├── .gitignore │ ├── README │ ├── cergmterms.txt │ ├── config_example_cergm.txt │ ├── config_example_conditional.txt │ ├── config_example_ifd_conditional.txt │ ├── config_example_sim_obs_stats.txt │ ├── config_example_tnt_conditional.txt │ ├── sampledesc.txt │ ├── sim_config_example_cergm.txt │ ├── subgraph0.txt │ └── subzone0.txt ├── setAttributes_n1000.txt ├── sim_config_estimated_polblogs.txt ├── sim_config_example.txt ├── sim_config_example_binattr.txt ├── sim_config_example_estimated_binattr.txt ├── sim_config_example_estimated_contattr.txt ├── sim_config_example_ifd.txt ├── sim_config_example_tnt.txt ├── submit_EstimNetDirected_arrays_contattr_example_jobs.sh ├── submit_EstimNetDirected_hashtables_contattr_example_jobs.sh ├── submit_EstimNetDirected_notables_contattr_example_jobs.sh └── undirected │ ├── .gitignore │ ├── README │ ├── README-hippie.txt │ ├── binaryAttributes_n1000_50_50.txt │ ├── config_example_n1000_binattar_basic.txt │ ├── config_example_n1000_binattar_ifd.txt │ ├── config_example_n1000_binattar_tnt.txt │ ├── config_gof_netscience_ifd.txt │ ├── config_hippie_tnt.txt │ ├── config_netscience_basic.txt │ ├── config_netscience_ifd.txt │ ├── config_netscience_tnt.txt │ ├── hippie_catattr.txt │ ├── hippie_ppi_high_edgelist.txt │ ├── run_EstimNetDirected_example_n1000_basic_slurm_script.sh │ ├── run_EstimNetDirected_example_n1000_ifd_slurm_script.sh │ ├── run_EstimNetDirected_example_n1000_tnt_slurm_script.sh │ ├── run_EstimNetDirected_hippie_tnt_slurm_script.sh │ ├── run_EstimNetDirected_netscience_basic_slurm_script.sh │ ├── run_EstimNetDirected_netscience_ifd_slurm_script.sh │ ├── run_EstimNetDirected_netscience_tnt_slurm_script.sh │ ├── run_SimulateERGM_gof_example_n1000_basic_slurm_script.sh │ ├── run_SimulateERGM_gof_example_n1000_ifd_slurm_script.sh │ ├── run_SimulateERGM_gof_example_n1000_tnt_slurm_script.sh │ ├── run_SimulateERGM_gof_netscience_ifd_slurm_script.sh │ ├── run_SimulateERGM_gof_netscience_tnt_slurm_script.sh │ └── sample_statistics_n1000_binattr_50_50_sim272500000.txt ├── pythonDemo ├── .gitignore ├── Digraph.py ├── EstimNetDirectedSimpleDemo.py ├── README ├── binaryAttribute_50_50_n500.txt ├── binaryAttributes_50_50_n1000.txt ├── changeStatisticsDirected.py ├── example_n1000_slurm_script.sh ├── example_polblogs_slurm_script.sh ├── example_slurm_script.sh ├── plotEstimNetSimpleDemoResults.R ├── polblogs │ ├── README │ ├── convertPolBlogsGraphToArclist.R │ ├── do_convert.out │ ├── do_convert.sh │ ├── polblogs.gml │ ├── polblogs.txt │ ├── polblogs_arclist.txt │ └── polblogs_catattr.txt ├── runExample.py ├── runExample_n1000.py ├── runExample_n2000.py ├── runExample_polblogs.py ├── sample_statistics_n1000_directed_binattr_sim620000000.txt ├── sample_statistics_n2000_directed_sim5000000.txt └── sample_statistics_n500_directed_binattr_sim420000000.txt ├── releasenotes.txt ├── scripts ├── .gitignore ├── build_estimnetdirected_estimation_results_tab.sh ├── buildslurmjobs_estimnetdirected.sh ├── buildslurmjobs_estimnetdirected_binattr.sh ├── buildslurmjobs_estimnetdirected_catattr.sh ├── buildtimestab.sh ├── computeBipartiteClusteringCoefficients.py ├── computeEstimNetDirectedBootstrapCI.R ├── computeEstimNetDirectedCovariance.R ├── config.template ├── config_binattr.template ├── config_catattr.template ├── convertEPOpatentDataToEstimNetDirectedFormat.py ├── convertEvtushenkoBoardDirectorAffiliationsToEstimNetDirectedFormat.R ├── convertGersteinYeastDataToEstimNetDirectedFormat.py ├── convertMatrixToArclist.R ├── convertNBERpatentDataToEstimNetDirectedFormat.py ├── convertNorwegianDirectorInterlockDataToEstimNetDirectedFormat.R ├── convertOpsahlNewmanScientificCollaborationDataToEstimNetDirectedFormat.R ├── convertPhysicianReferralDataToEstimNetDirectedFormat.py ├── convertSNAPedgelistToPajekFormat.R ├── convertSNAPpokecToEstimNetDirectedFormat.R ├── convertStLouisCrimeDataToEstimNetDirectedFormat.R ├── count_fourcycles_per_bipartite_node_type.R ├── count_unique_bipartite_nodes_in_fourcycles.R ├── estimnetdirectedEstimation2simulationConfig.sh ├── estimnetdirectedEstimation2tableMultiModels.sh ├── estimnetdirectedEstimation2textableMultiModels.sh ├── estimnetdirectedEstimation2textableSingleModel.sh ├── estimnetdirectedOutputToTimesTableMultiModels.sh ├── estimnetdirectedOutputToTimesTableSingleRow.sh ├── estimnetdirected_slurm_script.template ├── extractcERGM2subgraphs.py ├── extractnetwork.sh ├── formatestimatorresultstabletex.sh ├── formatestimatorresultstabletexFalseNegatives.sh ├── formatestimatorresultstabletexFalsePositives.sh ├── genrandomCategoricalAttributes.sh ├── genrandomContinuousAttributes.py ├── genrandomSetAttributes.py ├── get_fourcycle_edges.R ├── get_fourcycle_nodes.R ├── inducedSubgraphcERGM2.py ├── load_epo_patent_data.py ├── load_nber_patent_data.py ├── load_physician_referral_data.py ├── load_pokec_data.py ├── makeMLEresultstable.R ├── makeMLEresultstableFalsePositives.R ├── plotEstimNetDirectedResults.R ├── plotEstimNetDirectedSimFit.R ├── plotEstimNetDirectedcERGMSimFit2.R ├── plotEstimNetDirectedcERGMSimFitParallel_OBSOLETE.R ├── plotEstimNetDirectedcERGMSimFit_OBSOLETE.R ├── plotMLEresults.R ├── plotSimulationDiagnostics.R ├── plotStdErrSdThetaScatterplot.R ├── plotTotalTimeHistogram.R ├── plot_example_fourcycles_dependence_figures.R ├── plot_fourcycles_dependence_figure.R ├── plot_lattice_bipartite_fourcycles_dependence_figures.R ├── reorderEstimnetTextable.sh ├── run_plot_lattice_bipartite_fourcycles_dependence_figure.sh ├── simFitPlots.R ├── snowballSample.R ├── snowballSample.py ├── snowballSampleFromPajekEdgeList.R ├── snowballSampleFromPajekEdgeList.py ├── snowballSampleFromPhysicianReferralData.py ├── snowballSampleFromSNAPpokecNetwork.py ├── statsEstimNetDirectedSimFit.R ├── statsSimulationObs.R ├── sumtimes.sh └── visualizeSnowballSample.R └── src ├── .depend ├── .gitignore ├── EstimNetDirectedMPImain.c ├── EstimNetDirectedMain.c ├── Makefile ├── README ├── Random123-1.09 ├── LICENSE ├── docs │ ├── Doxyfile │ ├── cbrng.dox │ ├── header.html │ ├── html │ │ ├── CBRNG.html │ │ ├── Engine_8hpp.html │ │ ├── Engine_8hpp_source.html │ │ ├── ExamplesREADME.html │ │ ├── LICENSE.html │ │ ├── MicroURNG_8hpp.html │ │ ├── MicroURNG_8hpp_source.html │ │ ├── README.html │ │ ├── ReinterpretCtr_8hpp.html │ │ ├── ReinterpretCtr_8hpp_source.html │ │ ├── Release_01Notes.html │ │ ├── aes_8h.html │ │ ├── aes_8h_source.html │ │ ├── annotated.html │ │ ├── array_8h.html │ │ ├── array_8h_source.html │ │ ├── ars_8h.html │ │ ├── ars_8h_source.html │ │ ├── bc_s.png │ │ ├── cbrng_8dox.html │ │ ├── classes.html │ │ ├── classr123_1_1AESNI1xm128i-members.html │ │ ├── classr123_1_1AESNI1xm128i__R-members.html │ │ ├── classr123_1_1AESNI4x32__R-members.html │ │ ├── classr123_1_1ARS1xm128i__R-members.html │ │ ├── classr123_1_1ARS4x32__R-members.html │ │ ├── classr123_1_1MicroURNG-members.html │ │ ├── classr123_1_1MicroURNG.html │ │ ├── classr123_1_1Philox2x32__R-members.html │ │ ├── classr123_1_1Philox2x64__R-members.html │ │ ├── classr123_1_1Philox4x32__R-members.html │ │ ├── classr123_1_1Philox4x64__R-members.html │ │ ├── classr123_1_1Threefry2x32__R-members.html │ │ ├── classr123_1_1Threefry2x64__R-members.html │ │ ├── classr123_1_1Threefry4x32__R-members.html │ │ ├── classr123_1_1Threefry4x64__R-members.html │ │ ├── closed.png │ │ ├── compilerfeatures_8h.html │ │ ├── compilerfeatures_8h_source.html │ │ ├── doxygen.css │ │ ├── doxygen.png │ │ ├── files.html │ │ ├── functions.html │ │ ├── functions_0x61.html │ │ ├── functions_0x62.html │ │ ├── functions_0x63.html │ │ ├── functions_0x64.html │ │ ├── functions_0x65.html │ │ ├── functions_0x66.html │ │ ├── functions_0x67.html │ │ ├── functions_0x69.html │ │ ├── functions_0x6b.html │ │ ├── functions_0x6d.html │ │ ├── functions_0x6f.html │ │ ├── functions_0x70.html │ │ ├── functions_0x72.html │ │ ├── functions_0x73.html │ │ ├── functions_0x75.html │ │ ├── functions_0x76.html │ │ ├── functions_eval.html │ │ ├── functions_func.html │ │ ├── functions_func_0x62.html │ │ ├── functions_func_0x63.html │ │ ├── functions_func_0x64.html │ │ ├── functions_func_0x65.html │ │ ├── functions_func_0x66.html │ │ ├── functions_func_0x67.html │ │ ├── functions_func_0x69.html │ │ ├── functions_func_0x6d.html │ │ ├── functions_func_0x6f.html │ │ ├── functions_func_0x72.html │ │ ├── functions_func_0x73.html │ │ ├── functions_rela.html │ │ ├── functions_type.html │ │ ├── functions_vars.html │ │ ├── globals.html │ │ ├── globals_defs.html │ │ ├── globals_enum.html │ │ ├── globals_eval.html │ │ ├── globals_func.html │ │ ├── globals_type.html │ │ ├── group__AESNI.html │ │ ├── group__PhiloxNxW.html │ │ ├── group__ThreefryNxW.html │ │ ├── group__arrayNxW.html │ │ ├── gsl__cbrng_8h.html │ │ ├── gsl__cbrng_8h_source.html │ │ ├── gsl__microrng_8h.html │ │ ├── gsl__microrng_8h_source.html │ │ ├── hierarchy.html │ │ ├── index.html │ │ ├── installdox │ │ ├── main_8dox.html │ │ ├── modules.html │ │ ├── namespacemembers.html │ │ ├── namespacemembers_type.html │ │ ├── namespacer123.html │ │ ├── namespaces.html │ │ ├── nav_f.png │ │ ├── nav_h.png │ │ ├── open.png │ │ ├── pages.html │ │ ├── philox_8h.html │ │ ├── philox_8h_source.html │ │ ├── porting.html │ │ ├── releasenotes_8dox.html │ │ ├── search │ │ │ ├── all_5f.html │ │ │ ├── all_61.html │ │ │ ├── all_62.html │ │ │ ├── all_63.html │ │ │ ├── all_64.html │ │ │ ├── all_65.html │ │ │ ├── all_66.html │ │ │ ├── all_67.html │ │ │ ├── all_68.html │ │ │ ├── all_69.html │ │ │ ├── all_6b.html │ │ │ ├── all_6c.html │ │ │ ├── all_6d.html │ │ │ ├── all_6f.html │ │ │ ├── all_70.html │ │ │ ├── all_72.html │ │ │ ├── all_73.html │ │ │ ├── all_74.html │ │ │ ├── all_75.html │ │ │ ├── all_76.html │ │ │ ├── classes_61.html │ │ │ ├── classes_65.html │ │ │ ├── classes_6d.html │ │ │ ├── classes_70.html │ │ │ ├── classes_72.html │ │ │ ├── classes_74.html │ │ │ ├── close.png │ │ │ ├── defines_61.html │ │ │ ├── defines_67.html │ │ │ ├── defines_70.html │ │ │ ├── defines_72.html │ │ │ ├── defines_74.html │ │ │ ├── enums_72.html │ │ │ ├── enumvalues_61.html │ │ │ ├── enumvalues_70.html │ │ │ ├── enumvalues_73.html │ │ │ ├── enumvalues_74.html │ │ │ ├── files_61.html │ │ │ ├── files_63.html │ │ │ ├── files_65.html │ │ │ ├── files_67.html │ │ │ ├── files_6c.html │ │ │ ├── files_6d.html │ │ │ ├── files_70.html │ │ │ ├── files_72.html │ │ │ ├── files_73.html │ │ │ ├── files_74.html │ │ │ ├── functions_5f.html │ │ │ ├── functions_61.html │ │ │ ├── functions_62.html │ │ │ ├── functions_63.html │ │ │ ├── functions_64.html │ │ │ ├── functions_65.html │ │ │ ├── functions_66.html │ │ │ ├── functions_67.html │ │ │ ├── functions_68.html │ │ │ ├── functions_69.html │ │ │ ├── functions_6d.html │ │ │ ├── functions_6f.html │ │ │ ├── functions_70.html │ │ │ ├── functions_72.html │ │ │ ├── functions_73.html │ │ │ ├── functions_74.html │ │ │ ├── mag_sel.png │ │ │ ├── namespaces_72.html │ │ │ ├── nomatches.html │ │ │ ├── related_6f.html │ │ │ ├── search.css │ │ │ ├── search.js │ │ │ ├── search_l.png │ │ │ ├── search_m.png │ │ │ ├── search_r.png │ │ │ ├── typedefs_61.html │ │ │ ├── typedefs_62.html │ │ │ ├── typedefs_63.html │ │ │ ├── typedefs_64.html │ │ │ ├── typedefs_65.html │ │ │ ├── typedefs_69.html │ │ │ ├── typedefs_6b.html │ │ │ ├── typedefs_70.html │ │ │ ├── typedefs_72.html │ │ │ ├── typedefs_73.html │ │ │ ├── typedefs_74.html │ │ │ ├── typedefs_75.html │ │ │ ├── typedefs_76.html │ │ │ ├── variables_5f.html │ │ │ ├── variables_62.html │ │ │ ├── variables_63.html │ │ │ ├── variables_65.html │ │ │ ├── variables_6b.html │ │ │ ├── variables_6d.html │ │ │ ├── variables_72.html │ │ │ ├── variables_75.html │ │ │ └── variables_76.html │ │ ├── sse_8h.html │ │ ├── sse_8h_source.html │ │ ├── structaesni1xm128i__key__t-members.html │ │ ├── structaesni1xm128i__key__t.html │ │ ├── structr123_1_1AESNI1xm128i.html │ │ ├── structr123_1_1AESNI1xm128i.png │ │ ├── structr123_1_1AESNI1xm128i__R.html │ │ ├── structr123_1_1AESNI1xm128i__R.png │ │ ├── structr123_1_1AESNI4x32-members.html │ │ ├── structr123_1_1AESNI4x32.html │ │ ├── structr123_1_1AESNI4x32.png │ │ ├── structr123_1_1AESNI4x32__R.html │ │ ├── structr123_1_1AESNI4x32__R.png │ │ ├── structr123_1_1ARS1xm128i__R.html │ │ ├── structr123_1_1ARS4x32__R.html │ │ ├── structr123_1_1Engine-members.html │ │ ├── structr123_1_1Engine.html │ │ ├── structr123_1_1Philox2x32__R.html │ │ ├── structr123_1_1Philox2x64__R.html │ │ ├── structr123_1_1Philox4x32__R.html │ │ ├── structr123_1_1Philox4x64__R.html │ │ ├── structr123_1_1ReinterpretCtr-members.html │ │ ├── structr123_1_1ReinterpretCtr.html │ │ ├── structr123_1_1Threefry2x32__R.html │ │ ├── structr123_1_1Threefry2x64__R.html │ │ ├── structr123_1_1Threefry4x32__R.html │ │ ├── structr123_1_1Threefry4x64__R.html │ │ ├── structr123array16x8-members.html │ │ ├── structr123array16x8.html │ │ ├── structr123array1x32-members.html │ │ ├── structr123array1x32.html │ │ ├── structr123array1x64-members.html │ │ ├── structr123array1x64.html │ │ ├── structr123array1xm128i-members.html │ │ ├── structr123array1xm128i.html │ │ ├── structr123array2x32-members.html │ │ ├── structr123array2x32.html │ │ ├── structr123array2x64-members.html │ │ ├── structr123array2x64.html │ │ ├── structr123array4x32-members.html │ │ ├── structr123array4x32.html │ │ ├── structr123array4x64-members.html │ │ ├── structr123array4x64.html │ │ ├── structr123array8x32-members.html │ │ ├── structr123array8x32.html │ │ ├── structr123m128i-members.html │ │ ├── structr123m128i.html │ │ ├── tab_a.png │ │ ├── tab_b.png │ │ ├── tab_h.png │ │ ├── tab_s.png │ │ ├── tabs.css │ │ ├── threefry_8h.html │ │ └── threefry_8h_source.html │ ├── main.dox │ └── releasenotes.dox ├── examples │ ├── BUILD.LOG │ ├── BUILDVC.BAT │ ├── BUILDVC11.BAT │ ├── GNUmakefile │ ├── README │ ├── boxmuller.hpp │ ├── gencl.sh │ ├── kat.h │ ├── kat_c │ ├── kat_c.c │ ├── kat_cpp │ ├── kat_cpp.cpp │ ├── kat_cuda.cu │ ├── kat_dev_execute.h │ ├── kat_main.h │ ├── kat_opencl.c │ ├── kat_opencl_kernel.ocl │ ├── kat_vectors │ ├── old_kat_vectors │ ├── pi_aes │ ├── pi_aes.cpp │ ├── pi_capi │ ├── pi_capi.c │ ├── pi_check.h │ ├── pi_cppapi │ ├── pi_cppapi.cpp │ ├── pi_cuda.cu │ ├── pi_cudapp.cu │ ├── pi_gsl.c │ ├── pi_microurng │ ├── pi_microurng.cpp │ ├── pi_opencl.c │ ├── pi_opencl_kernel.ocl │ ├── pi_uniform │ ├── pi_uniform.cpp │ ├── rngNxW.h │ ├── simple │ ├── simple.c │ ├── simplepp │ ├── simplepp.cpp │ ├── time_boxmuller │ ├── time_boxmuller.cpp │ ├── time_boxmuller_cuda.cu │ ├── time_cuda.cu │ ├── time_initkeyctr.h │ ├── time_misc.h │ ├── time_opencl.c │ ├── time_opencl_kernel.ocl │ ├── time_random123.h │ ├── time_serial │ ├── time_serial.c │ ├── time_thread.c │ ├── timers │ ├── timers.cpp │ ├── u01fixedpt.h │ ├── ua.hpp │ ├── uniform.hpp │ ├── ut_Engine │ ├── ut_Engine.cpp │ ├── ut_M128 │ ├── ut_M128.cpp │ ├── ut_ReinterpretCtr │ ├── ut_ReinterpretCtr.cpp │ ├── ut_aes │ ├── ut_aes.cpp │ ├── ut_ars │ ├── ut_ars.c │ ├── ut_carray │ ├── ut_carray.cpp │ ├── ut_features │ ├── ut_features.cpp │ ├── ut_gsl.c │ ├── ut_ua │ ├── ut_ua.cpp │ ├── ut_uniform │ ├── ut_uniform.cpp │ ├── ut_uniform_IEEEkat.cpp │ ├── ut_uniform_IEEEkatvectors.hpp │ ├── ut_uniform_kat_vectors.dat │ ├── ut_uniform_reference.hpp │ ├── util.h │ ├── util_cpu.h │ ├── util_cuda.h │ ├── util_demangle.hpp │ ├── util_expandtpl.h │ ├── util_m128.h │ ├── util_opencl.h │ └── util_print.h └── include │ └── Random123 │ ├── MicroURNG.hpp │ ├── ReinterpretCtr.hpp │ ├── aes.h │ ├── array.h │ ├── ars.h │ ├── conventional │ ├── Engine.hpp │ └── gsl_cbrng.h │ ├── features │ ├── clangfeatures.h │ ├── compilerfeatures.h │ ├── gccfeatures.h │ ├── iccfeatures.h │ ├── msvcfeatures.h │ ├── nvccfeatures.h │ ├── open64features.h │ ├── openclfeatures.h │ ├── pgccfeatures.h │ ├── sse.h │ ├── sunprofeatures.h │ └── xlcfeatures.h │ ├── gsl_microrng.h │ ├── philox.h │ └── threefry.h ├── SimulateERGMmain.c ├── basicSampler.c ├── basicSampler.h ├── changeStatisticsBipartiteUndirected.c ├── changeStatisticsBipartiteUndirected.h ├── changeStatisticsDirected.c ├── changeStatisticsDirected.h ├── changeStatisticsGeneral.c ├── changeStatisticsGeneral.h ├── changeStatisticsTypes.h ├── changeStatisticsUndirected.c ├── changeStatisticsUndirected.h ├── common.mk ├── configparser.c ├── configparser.h ├── equilibriumExpectation.c ├── equilibriumExpectation.h ├── estimconfigparser.c ├── estimconfigparser.h ├── graph.c ├── graph.h ├── ifdSampler.c ├── ifdSampler.h ├── loadGraph.c ├── loadGraph.h ├── simconfigparser.c ├── simconfigparser.h ├── simulation.c ├── simulation.h ├── 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