├── .gitignore ├── README.md ├── data ├── 20ng_test.gml ├── 20ng_train.gml ├── binary_test.gml ├── binary_train.gml ├── wiki_test.gml └── wiki_train_subset.gml ├── lab ├── accuracy-degradation-big-topics.ipynb ├── binary_large_topics.py ├── plot_degradation_topic.pdf ├── plot_solve_degradation.pdf └── utils.py ├── medlda ├── OnlineGibbsMedLDA │ ├── CMakeLists.txt │ ├── Makefile │ ├── bayespaTest │ ├── d2p.m │ ├── experiment.py │ ├── inc │ │ ├── OnlineGibbsMedLDA.h │ │ ├── OnlineGibbsMedLDAWrapper.h │ │ ├── OnlineGibbsMedLDAmtWrapper.h │ │ └── utils │ │ │ ├── Corpus.h │ │ │ ├── Document.h │ │ │ ├── InverseGaussian.h │ │ │ ├── MVGaussian.h │ │ │ ├── Mapper.h │ │ │ ├── Sample.h │ │ │ ├── Setting.h │ │ │ ├── ap.h │ │ │ ├── apaux.h │ │ │ ├── apvt.h │ │ │ ├── cholesky.h │ │ │ ├── cokus.h │ │ │ ├── debug.h │ │ │ ├── defs.h │ │ │ ├── experiment.h │ │ │ ├── gammaln.h │ │ │ ├── objcokus.h │ │ │ ├── pyutils.h │ │ │ ├── spdinverse.h │ │ │ ├── stl.h │ │ │ └── utils.h │ ├── src │ │ ├── CMakeLists.txt │ │ ├── Makefile │ │ ├── OnlineGibbsMedLDA.cpp │ │ ├── OnlineGibbsMedLDAWrapper.cpp │ │ ├── OnlineGibbsMedLDAmtWrapper.cpp │ │ ├── PythonWrapper.cpp │ │ └── utils │ │ │ ├── CMakeLists.txt │ │ │ ├── Corpus.cpp │ │ │ ├── Document.cpp │ │ │ ├── InverseGaussian.cpp │ │ │ ├── MVGaussian.cpp │ │ │ ├── Mapper.cpp │ │ │ ├── Sample.cpp │ │ │ ├── Setting.cpp │ │ │ ├── ap.cpp │ │ │ ├── cholesky.cpp │ │ │ ├── cokus.cpp │ │ │ ├── objcokus.cpp │ │ │ └── spdinverse.cpp │ ├── test │ │ ├── run_mc.py │ │ ├── test.py │ │ └── test_pyutils.cpp │ ├── topic.m │ ├── topic_all_tsne.m │ ├── topic_all_tsne.m~ │ ├── topic_tsne.m │ ├── tsne.m │ ├── tsne_d.m │ ├── tsne_p.m │ └── x2p.m └── __init__.py ├── setup.py └── test └── test.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/strin/BayesPA/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: 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