├── .gitignore ├── CHANGELOG.md ├── LICENSE.TXT ├── Makefile ├── README.md ├── brent.d ├── decode.d ├── expectation_step.d ├── gsl_test.d ├── logger.d ├── maximization_step.d ├── model ├── data.d ├── gsl_matrix_vector.d ├── hmm_testData.txt ├── propagation_core.d ├── psmc_hmm.d ├── psmc_model.d ├── stateVec.d ├── stateVecAllocator.d ├── time_intervals.d └── transition_rate.d ├── msmc2.d ├── powell.d └── unittest.d /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/stschiff/msmc2/HEAD/.gitignore -------------------------------------------------------------------------------- /CHANGELOG.md: -------------------------------------------------------------------------------- 1 | v2.1.4: Fixed deprecation warnings with latest D compiler (v2.100.2). -------------------------------------------------------------------------------- /LICENSE.TXT: 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