├── .gitignore ├── LICENSE ├── README.md ├── Results.txt ├── __init__.py ├── bert_multilabel_run_classifier.py ├── evaluation.py ├── exps-data ├── codes_and_titles_de.txt ├── codes_and_titles_en.txt ├── data │ ├── anns_test.txt │ ├── anns_train_dev.txt │ ├── dev_data.pkl │ ├── discarded.pkl │ ├── ids_development.txt │ ├── ids_test.txt │ ├── mlb.pkl │ ├── test_data.pkl │ └── train_data.pkl ├── dev_data_de_en.pkl ├── models │ ├── bert-en │ │ ├── config.json │ │ ├── eval_output.txt │ │ ├── eval_results.txt │ │ ├── preds_development.txt │ │ └── vocab.txt │ ├── biobert-en │ │ ├── bert_config.json │ │ ├── config.json │ │ ├── eval_output.txt │ │ ├── eval_results.txt │ │ ├── preds_development.txt │ │ └── vocab.txt │ ├── clstm-fasttext-de │ │ ├── config │ │ ├── eval_output.txt │ │ └── preds_development.txt │ ├── clstm-fasttext-en │ │ ├── config │ │ ├── eval_output.txt │ │ └── preds_development.txt │ ├── clstm-pubmed-en │ │ ├── config │ │ ├── eval_output.txt │ │ └── preds_development.txt │ ├── cnn-fasttext-de │ │ ├── config │ │ ├── eval_output.txt │ │ └── preds_development.txt │ ├── cnn-fasttext-en │ │ ├── config │ │ ├── eval_output.txt │ │ └── preds_development.txt │ ├── cnn-pubmed-en │ │ ├── eval_output.txt │ │ └── preds_development.txt │ ├── han-fasttext-de │ │ ├── config │ │ ├── eval_output.txt │ │ └── preds_development.txt │ ├── han-fasttext-en │ │ ├── config │ │ ├── eval_output.txt │ │ └── preds_development.txt │ ├── han-pubmed-en │ │ ├── eval_output.txt │ │ └── preds_development.txt │ ├── multi-bert-de │ │ ├── config.json │ │ ├── eval_output.txt │ │ ├── eval_results.txt │ │ ├── preds_development.txt │ │ └── vocab.txt │ ├── slstm-fasttext-de │ │ ├── config │ │ ├── eval_output.txt │ │ └── preds_development.txt │ ├── slstm-fasttext-en │ │ ├── config │ │ ├── eval_output.txt │ │ └── preds_development.txt │ └── slstm-pubmed-en │ │ ├── config │ │ ├── eval_output.txt │ │ └── preds_development.txt ├── results │ ├── baseline-de_preds_test.txt │ ├── baseline-de_preds_test_eval.txt │ ├── baseline-de_preds_test_fixed.txt │ ├── baseline-de_preds_test_fixed_eval.txt │ ├── baseline-en_preds_test.txt │ ├── baseline-en_preds_test_eval.txt │ ├── baseline-en_preds_test_fixed.txt │ ├── baseline-en_preds_test_fixed_eval.txt │ ├── bert-en_preds_test.txt │ ├── bert-en_preds_test_eval.txt │ ├── bert-en_preds_test_fixed.txt │ ├── bert-en_preds_test_fixed_eval.txt │ ├── biobert-en_preds_test.txt │ ├── biobert-en_preds_test_eval.txt │ ├── biobert-en_preds_test_fixed.txt │ ├── biobert-en_preds_test_fixed_eval.txt │ ├── clstm-fasttext-en_preds_test.txt │ ├── clstm-fasttext-en_preds_test_eval.txt │ ├── clstm-fasttext-en_preds_test_fixed.txt │ ├── clstm-fasttext-en_preds_test_fixed_eval.txt │ ├── clstm-pubmed-en_preds_test.txt │ ├── clstm-pubmed-en_preds_test_eval.txt │ ├── clstm-pubmed-en_preds_test_fixed.txt │ ├── clstm-pubmed-en_preds_test_fixed_eval.txt │ ├── cnn-fasttext-de_preds_test.txt │ ├── cnn-fasttext-de_preds_test_eval.txt │ ├── cnn-fasttext-de_preds_test_fixed.txt │ ├── cnn-fasttext-de_preds_test_fixed_eval.txt │ ├── cnn-fasttext-en_preds_test.txt │ ├── cnn-fasttext-en_preds_test_eval.txt │ ├── cnn-fasttext-en_preds_test_fixed.txt │ ├── cnn-fasttext-en_preds_test_fixed_eval.txt │ ├── cnn-pubmed-en_preds_test.txt │ ├── cnn-pubmed-en_preds_test_eval.txt │ ├── cnn-pubmed-en_preds_test_fixed.txt │ ├── cnn-pubmed-en_preds_test_fixed_eval.txt │ ├── ensemble_preds_test.txt │ ├── ensemble_preds_test_eval.txt │ ├── ensemble_preds_test_fixed.txt │ ├── ensemble_preds_test_fixed_eval.txt │ ├── han-fasttext-de_preds_test.txt │ ├── han-fasttext-de_preds_test_eval.txt │ ├── han-fasttext-de_preds_test_fixed.txt │ ├── han-fasttext-de_preds_test_fixed_eval.txt │ ├── han-fasttext-en_preds_test.txt │ ├── han-fasttext-en_preds_test_eval.txt │ ├── han-fasttext-en_preds_test_fixed.txt │ ├── han-fasttext-en_preds_test_fixed_eval.txt │ ├── han-pubmed-en_preds_test.txt │ ├── han-pubmed-en_preds_test_eval.txt │ ├── han-pubmed-en_preds_test_fixed.txt │ ├── han-pubmed-en_preds_test_fixed_eval.txt │ ├── multi-bert-de_preds_test.txt │ ├── multi-bert-de_preds_test_eval.txt │ ├── multi-bert-de_preds_test_fixed.txt │ ├── multi-bert-de_preds_test_fixed_eval.txt │ ├── slstm-fasttext-de_preds_test.txt │ ├── slstm-fasttext-de_preds_test_eval.txt │ ├── slstm-fasttext-de_preds_test_fixed.txt │ ├── slstm-fasttext-de_preds_test_fixed_eval.txt │ ├── slstm-fasttext-en_preds_test.txt │ ├── slstm-fasttext-en_preds_test_eval.txt │ ├── slstm-fasttext-en_preds_test_fixed.txt │ ├── slstm-fasttext-en_preds_test_fixed_eval.txt │ ├── slstm-pubmed-en_preds_test.txt │ ├── slstm-pubmed-en_preds_test_eval.txt │ ├── slstm-pubmed-en_preds_test_fixed.txt │ └── slstm-pubmed-en_preds_test_fixed_eval.txt ├── test_data_de_en.pkl └── train_data_de_en.pkl ├── load_data.py ├── loss.py ├── main.py ├── models.py ├── parse_icd10.py ├── predict.py ├── read_data.py └── train.py /.gitignore: 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