submissions's Repositories
17 repositories
aws-s3-collab-upload
Bash steps to copy files into a collaborator's AWS S3 bucket
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batch_vcfs
Process a batch of SNP and indel VCF files as read from an XLSX file
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🌐 Public
bgzip_md5
Script that combines tee, bgzip, and md5sum to efficiently checksum and compress files
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🌐 Public
cram-processing-tools
*For use by the Submissions Team* A collection of scripts and steps for sharing data (initially used as a part of the TOPMed submissions pipeline)
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fglob
Process lists of glob patterns
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fhir-specification
eMERGE FHIR Specification
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gzip_md5_temp
No description
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hgsc-archive-tools
No description
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MFTS-issues
No description
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pipelines-java
Sample Java application referred to by Azure Pipelines documentation
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PyBy-Converter
A very simple python script for converting bytes to MB, GB, TB
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🌐 Public
relascope
Records recursive measurements of filesystem directories
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scripts-for-nexus-pipeline
Internal scripts for working with DNAnexus
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seneschal
Seneschal is an automation system that serves as a restricted control interface between users and a protected environment.
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shepherd
A set of scripts for defining batches of work that are then tracked to failure or (possibly partial) completion.
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Storage_automation
This will be used to merge several spreadsheets for a storage report
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🌐 Public
submissions-training
Resources for internal training
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🌐 Public