├── .circleci ├── config.yml ├── images │ └── primary │ │ ├── Dockerfile │ │ └── README.md └── install_deps.sh ├── .clang-format ├── .editorconfig ├── .gitignore ├── AUTHORS ├── LICENSE ├── Makefile ├── README.md ├── bin └── .gitignore ├── doc ├── make_manual.sh └── tex │ ├── README.tex │ ├── asofi3d_user_guide.tex │ ├── authda14.sty │ ├── authda3.bst │ ├── eps │ ├── ABS_cPML_comp.fig │ ├── CijOrtho.png │ ├── SOFI3D_vs_analytic_p.pdf │ ├── SOFI3D_vs_analytic_vx.pdf │ ├── SSG-Cart.eps │ ├── bench_scaleup.fig │ ├── bench_speedup.fig │ ├── cell.eps │ ├── cell.fig │ ├── coordinate_system_customforcesource.odp │ ├── coordinate_system_customforcesource.pdf │ ├── defaultSnap.eps │ ├── error_3D_courant.pdf │ ├── fig_cell.eps │ ├── grid.fig │ ├── grid.pdf │ ├── homogenous_grid_n_16_5.pdf │ ├── homogenous_grid_n_2_5.pdf │ ├── homogenous_grid_n_4_5.pdf │ ├── invisible_gamma_1.gif │ ├── plane_wave.eps │ ├── plane_wave.fig │ ├── signals.fig │ ├── signals.pdf │ ├── signals_amp.eps │ ├── signals_phase.eps │ ├── signals_time.eps │ ├── slices_snap.fig │ ├── slices_snap2.pdf │ ├── ssg_grid.odp │ ├── ssg_grid.pdf │ └── t.tex │ ├── parseREADME2tex.sh │ ├── sws.sty │ ├── the_figure.tex │ ├── thesis.bib │ └── tikz-3dplot.sty ├── mfiles ├── analytical_solution_fullspace │ ├── SOFI3D_vs_analytic_p.eps │ ├── SOFI3D_vs_analytic_vx.eps │ ├── analytic_calculate_Ricker_wavelet.m │ ├── analytic_calculate_integral_Ricker_wavelet.m │ ├── analytic_calculate_sin_hoch_3_wavelet.m │ ├── analytic_calculate_step_function_wavelet.m │ ├── analytic_pointsource_homfullspace.m │ ├── analytic_solution_main.m │ ├── comparison_analytic_vs_sofi3D.m │ ├── create_su_struct.m │ ├── outseis.m │ └── su2matlab.m ├── analytical_solution_halfspace │ └── .gitignore ├── attenuation_tools │ ├── qapprox.m │ ├── qflt.m │ ├── qgsls.m │ └── qplot.m ├── create_simple_tunnel_mod3D.m ├── create_source_file.m ├── holberg_coeff │ ├── gethbcoeff.m │ ├── holberg.m │ └── tgs2.m ├── merge_snapshots.m ├── old_scripts │ ├── bench_plot_CHIC.m │ ├── benchmark_fullspace_cutdata.sh │ ├── cut_plane.cxx │ ├── cut_plane_part.cxx │ ├── madagascar │ │ ├── .sconsign.dbhash │ │ └── SConstruct │ ├── model.param │ ├── runNSnaps.sh │ ├── snap_pressure.m │ ├── sofi3D_clean_ring.sh │ ├── sofi3D_job.sh │ ├── sofi3D_mvapich_job.sh │ ├── sofi3D_ssg_stabtest.job │ ├── source.m │ └── sucat.sh ├── plot_2Dslices.m ├── read_asofi3D_json.m ├── run_and_snap.m ├── snap3D_ASOFI.m ├── utils │ ├── colormap │ │ └── .gitignore │ ├── create_colormaps.m │ ├── defstruct.m │ ├── defval.m │ ├── ind2patch.m │ ├── rdbuMap.m │ └── savefig.m └── write_asofi3D_json.m ├── par ├── figures │ └── .gitignore ├── in_and_out │ ├── asofi3D.json │ └── benchmark │ │ ├── scaleup_np1024.json │ │ ├── scaleup_np128.json │ │ ├── scaleup_np16.json │ │ ├── scaleup_np2048.json │ │ ├── scaleup_np256.json │ │ ├── scaleup_np32.json │ │ ├── scaleup_np4096.json │ │ ├── scaleup_np512.json │ │ ├── scaleup_np64.json │ │ ├── scaleup_np8.json │ │ ├── speedup_np1024.json │ │ ├── speedup_np128.json │ │ ├── speedup_np1536.json │ │ ├── speedup_np16.json │ │ ├── speedup_np2048.json │ │ ├── speedup_np256.json │ │ ├── speedup_np2560.json │ │ ├── speedup_np3072.json │ │ ├── speedup_np32.json │ │ ├── speedup_np3584.json │ │ ├── speedup_np4096.json │ │ ├── speedup_np512.json │ │ ├── speedup_np64.json │ │ └── speedup_np8.json ├── log │ └── .gitignore ├── model │ ├── .gitignore │ ├── hi.rsf │ └── remove-SOFI3D-from-filenames.sh ├── snap │ └── .gitignore ├── sources │ └── source.dat ├── start_asofi3D.sh └── su │ ├── .gitignore │ ├── quickView.m │ └── suNimage.sh ├── run_asofi3D.sh ├── src ├── CPML_coeff.c ├── CPML_ini_elastic.c ├── Makefile ├── PML_ini.c ├── PML_ini_acoustic.c ├── Sofi3DDoc.Doxyfile ├── absorb.c ├── absorb_PML.c ├── av_mat.c ├── av_mat_acoustic.c ├── benchmod.c ├── catseis.c ├── checkfd.c ├── checkfd_acoustic.c ├── comm_ini.c ├── comm_ini_acoustic.c ├── comm_ini_s.c ├── config-manual.mk ├── configure ├── constants.h ├── data_structures.h ├── enum.h ├── eqsource.c ├── exchange_par.c ├── exchange_s.c ├── exchange_s_acoustic.c ├── exchange_v.c ├── exchange_v_acoustic.c ├── fd.h ├── globvar.h ├── info.c ├── initproc.c ├── initsour.c ├── json_parser.c ├── madinput.c ├── matcopy.c ├── matcopy_acoustic.c ├── memory.c ├── merge.c ├── merge_source_field.c ├── mergemod.c ├── model_acoustic.c ├── model_elastic.c ├── model_elastic_examples │ ├── genmod │ │ ├── Khang │ │ │ └── Khang_elastic.c │ │ ├── crack1_rsg.c │ │ ├── deich_3d_small.c │ │ ├── gausshill.c │ │ ├── iceland.c │ │ ├── jastram │ │ │ ├── jastram_acoustic.c │ │ │ └── jastram_elastic.c │ │ ├── kang_bench │ │ │ ├── benchmark_acoustic.c │ │ │ └── benchmark_elastic.c │ │ ├── kasten.c │ │ ├── lhh_sandra.c │ │ ├── mallik.c │ │ ├── milet.c │ │ ├── pap_tunneldisp_10.c │ │ ├── plume3.c │ │ ├── polarity_test45.c │ │ ├── random │ │ │ ├── .gmtcommands │ │ │ ├── beschb.c │ │ │ ├── bessik.c │ │ │ ├── chebev.c │ │ │ ├── cutslice.c │ │ │ ├── cutslice_x.c │ │ │ ├── cutslice_z.c │ │ │ ├── fftn.c │ │ │ ├── fluct.m │ │ │ ├── gammln.c │ │ │ ├── nrutil.c │ │ │ ├── plot2d.m │ │ │ ├── plot2dposter.m │ │ │ ├── random.tar.gz │ │ │ ├── random2d.m │ │ │ ├── random2d2.c │ │ │ ├── random2d3.c │ │ │ ├── random3d2.c │ │ │ └── util.c │ │ ├── random3d2.c │ │ ├── randomtest.c │ │ ├── tomo_1.c │ │ ├── tomo_1_rsg.c │ │ ├── tomo_2.c │ │ ├── tomo_3.c │ │ ├── tomo_3_1.c │ │ ├── tomo_test.c │ │ ├── trogmodel.c │ │ ├── trogmodelnewcode.c │ │ ├── tuebbing.c │ │ ├── tuebbingtbm.c │ │ ├── tunnel.c │ │ ├── tunnel2.c │ │ ├── tunnel3.c │ │ ├── tunnel5_rsg.c │ │ ├── tunnel5_sphere_rsg.c │ │ ├── tunnel5_topo_rsg.c │ │ ├── tunnel5_topo_wo_rsg.c │ │ ├── tunnel5_wo_rsg.c │ │ ├── tunnel5_wo_sphere_rsg.c │ │ ├── tunnel5a_rsg.c │ │ ├── tunnel6_rsg.c │ │ ├── tunnel_raybeam.c │ │ ├── tunneldisp_025.c │ │ ├── tunneldisp_05.c │ │ ├── tunneldisp_075.c │ │ ├── tunneldisp_10.c │ │ ├── tunneldisp_11.c │ │ └── tunneldisp_fault.c │ ├── model_acoustic.c │ ├── model_elastic.c │ ├── model_elastic.c.orig │ ├── model_elastic.c_org │ ├── model_elastic_JW.c │ ├── model_elastic_modes.c │ ├── model_elastic_o.c │ ├── model_elastic_orhto.c │ ├── model_elastic_ortho.c │ ├── model_elastic_sava.c │ └── model_visco.c ├── model_visco.c ├── note.c ├── output_source_signal.c ├── outseis.c ├── outseis_glob.c ├── part_model.c ├── psource.c ├── psource_acoustic.c ├── rd_sour.c ├── read_checkpoint.c ├── read_par_json.c ├── read_par_json.c_orig ├── readdsk.c ├── readmod.c ├── readmod_acoustic.c ├── receiver.c ├── rwsegy.c ├── save_checkpoint.c ├── saveseis.c ├── saveseis_glob.c ├── segy.h ├── segy.h.legalstatement ├── seismerge.c ├── seismo.c ├── seismo_acoustic.c ├── snap.c ├── snap_acoustic.c ├── snapmerge.c ├── sofi3D.c ├── sofi3D_acoustic.c ├── source_moment_tensor.c ├── source_random.c ├── sources.c ├── splitrec.c ├── splitsrc.c ├── surface.c ├── surface_acoustic.c ├── surface_elastic.c ├── testmpi.c ├── timing.c ├── update_s.c ├── update_s_CPML.c ├── update_s_CPML_elastic.c ├── update_s_acoustic.c ├── update_s_acoustic_PML.c ├── update_s_elastic.c ├── update_v.c ├── update_v_CPML.c ├── update_v_acoustic.c ├── update_v_acoustic_PML.c ├── util.c ├── wavelet.c ├── write_source_field.c ├── writedsk.c ├── writemod.c ├── writepar.c ├── zero.c ├── zero_acoustic.c ├── zero_elastic.c └── zero_elastic_CPML.c └── tests ├── check_test_env.sh ├── compare_datasets.py ├── convert-su-to-segy.sh ├── fixtures ├── test_01 │ ├── in_and_out │ │ └── asofi3D.json │ ├── sources │ │ └── source.dat │ ├── src │ │ └── model_elastic.c │ └── su │ │ └── test_vx.sgy ├── test_02 │ ├── in_and_out │ │ └── fullspace.json │ ├── model_elastic.c │ ├── sources │ │ └── fullspace_sources.dat │ └── su │ │ ├── convert_to_segy.sh │ │ ├── fullspace_p.sgy │ │ └── fullspace_vx.sgy ├── test_03 │ ├── asofi3D.json │ ├── model_elastic.c │ ├── receiver.dat │ └── source.dat ├── test_04 │ ├── asofi3D.json │ ├── model_elastic.c │ ├── receiver.dat │ └── source.dat ├── test_05 │ ├── asofi3D_force_in_x.json │ ├── asofi3D_force_in_y.json │ ├── model_elastic.c │ ├── receiver_force_in_x.dat │ ├── receiver_force_in_y.dat │ ├── source_force_in_x.dat │ └── source_force_in_y.dat ├── test_06 │ ├── asofi3D_force_in_x.json │ ├── asofi3D_force_in_y.json │ ├── model_elastic.c │ ├── receiver_force_in_x.dat │ ├── receiver_force_in_y.dat │ ├── source_force_in_x.dat │ └── source_force_in_y.dat ├── test_07 │ ├── asofi3D_force_in_x.json │ ├── asofi3D_force_in_y.json │ ├── model_elastic.c │ ├── receiver_force_in_x.dat │ ├── receiver_force_in_y.dat │ ├── source_force_in_x.dat │ └── source_force_in_y.dat ├── test_08 │ ├── asofi3D_force_in_x.json │ ├── asofi3D_force_in_y.json │ ├── model_elastic.c │ ├── receiver_force_in_x.dat │ ├── receiver_force_in_y.dat │ ├── source_force_in_x.dat │ └── source_force_in_y.dat ├── test_09 │ ├── in_and_out │ │ ├── asofi3D-readmod=-1.json │ │ └── asofi3D-readmod=1.json │ └── sources │ │ └── source.dat ├── test_10 │ ├── asofi3D.json │ ├── model_elastic.c │ ├── receiver.dat │ ├── source.dat │ └── su │ │ └── 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