├── .github ├── ISSUE_TEMPLATE.md └── PULL_REQUEST_TEMPLATE.md ├── .gitignore ├── AUTHORS ├── CITATION ├── CONDUCT.md ├── CONTRIBUTING.md ├── LICENSE.md ├── Makefile ├── README.md ├── _config.yml ├── _episodes ├── .gitkeep ├── 01-intro.md ├── 02-project.md ├── 03-versioncontrol.md ├── 04-hosting.md ├── 05-taskautomation.md ├── 06-robust.md ├── 07-coffee.md ├── 08-issues.md ├── 09-license.md ├── 10-packaging.md ├── 11-review.md ├── 12-lunch.md ├── 13-testing.md ├── 14-continuous.md ├── 15-agile.md ├── 16-sturdy.md ├── 17-tdd.md ├── 18-compromise.md ├── 19-coffee.md ├── 20-community.md ├── 21-mentor.md ├── 22-governance.md ├── 23-marketing.md └── 24-conclusion.md ├── _episodes_rmd ├── .gitkeep └── data │ └── .gitkeep ├── _extras ├── .gitkeep ├── about.md ├── design.md ├── discuss.md ├── figures.md └── guide.md ├── _includes ├── all_figures.html ├── all_keypoints.html ├── carpentries.html ├── dc │ ├── intro.html │ ├── schedule.html │ ├── syllabus.html │ └── who.html ├── episode_break.html ├── episode_keypoints.html ├── episode_navbar.html ├── episode_overview.html ├── episode_title.html ├── javascript.html ├── lc │ ├── intro.html │ ├── schedule.html │ ├── syllabys.html │ └── who.html ├── lesson_footer.html ├── links.md ├── main_title.html ├── navbar.html ├── problems.md ├── sc │ ├── intro.html │ ├── schedule.html │ ├── syllabus.html │ └── who.html ├── syllabus.html ├── workshop_ad.html └── workshop_footer.html ├── _layouts ├── base.html ├── break.html ├── episode.html ├── lesson.html ├── page.html ├── reference.html └── workshop.html ├── assets ├── css │ ├── bootstrap-theme.css │ ├── bootstrap-theme.css.map │ ├── bootstrap.css │ ├── bootstrap.css.map │ └── lesson.scss ├── fonts │ ├── glyphicons-halflings-regular.eot │ ├── glyphicons-halflings-regular.svg │ ├── glyphicons-halflings-regular.ttf │ ├── glyphicons-halflings-regular.woff │ └── glyphicons-halflings-regular.woff2 ├── img │ ├── dc-icon-black.svg │ ├── lc-icon-black.png │ ├── lc-icon-black.svg │ ├── swc-icon-blue.svg │ ├── swc-logo-blue.png │ ├── swc-logo-blue.svg │ ├── swc-logo-white.png │ └── swc-logo-white.svg └── js │ ├── bootstrap.min.js │ ├── jquery.min.js │ ├── jquery.min.map │ └── lesson.js ├── bin ├── chunk-options.R ├── extract_figures.py ├── generate_md_episodes.R ├── knit_lessons.sh ├── lesson_check.py ├── lesson_initialize.py ├── markdown_ast.rb ├── repo_check.py ├── test_lesson_check.py ├── util.py └── workshop_check.py ├── code └── .gitkeep ├── data └── .gitkeep ├── favicon-dc.ico ├── favicon-lc.ico ├── favicon-swc.ico ├── fig ├── .gitkeep ├── agile-feedback.png ├── issue-lifecycle.png ├── prioritize.png └── sturdy.png ├── files ├── .gitkeep ├── blurb.txt └── schedule.txt ├── index.md ├── reference.md ├── setup.md ├── short ├── CONTRIBUTING.md ├── Gruntfile.js ├── LICENSE ├── README.md ├── bower.json ├── css │ ├── print │ │ ├── paper.css │ │ └── pdf.css │ ├── reveal.css │ ├── reveal.scss │ └── theme │ │ ├── README.md │ │ ├── beige.css │ │ ├── black.css │ │ ├── blood.css │ │ ├── league.css │ │ ├── moon.css │ │ ├── night.css │ │ ├── serif.css │ │ ├── simple.css │ │ ├── sky.css │ │ ├── solarized.css │ │ ├── source │ │ ├── beige.scss │ │ ├── black.scss │ │ ├── blood.scss │ │ ├── league.scss │ │ ├── moon.scss │ │ ├── night.scss │ │ ├── serif.scss │ │ ├── simple.scss │ │ ├── sky.scss │ │ ├── solarized.scss │ │ └── white.scss │ │ ├── template │ │ ├── mixins.scss │ │ ├── settings.scss │ │ └── theme.scss │ │ └── white.css ├── custom.css ├── img │ ├── cc-by.svg │ ├── noble.png │ ├── overlay.png │ └── phd052810s.gif ├── index.html ├── js │ └── reveal.js ├── lib │ ├── css │ │ └── zenburn.css │ ├── font │ │ ├── league-gothic │ │ │ ├── LICENSE │ │ │ ├── league-gothic.css │ │ │ ├── league-gothic.eot │ │ │ ├── league-gothic.ttf │ │ │ └── league-gothic.woff │ │ └── source-sans-pro │ │ │ ├── LICENSE │ │ │ ├── source-sans-pro-italic.eot │ │ │ ├── source-sans-pro-italic.ttf │ │ │ ├── source-sans-pro-italic.woff │ │ │ ├── source-sans-pro-regular.eot │ │ │ ├── source-sans-pro-regular.ttf │ │ │ ├── source-sans-pro-regular.woff │ │ │ ├── source-sans-pro-semibold.eot │ │ │ ├── source-sans-pro-semibold.ttf │ │ │ ├── source-sans-pro-semibold.woff │ │ │ ├── source-sans-pro-semibolditalic.eot │ │ │ ├── source-sans-pro-semibolditalic.ttf │ │ │ ├── source-sans-pro-semibolditalic.woff │ │ │ └── source-sans-pro.css │ └── js │ │ ├── classList.js │ │ ├── head.min.js │ │ └── html5shiv.js ├── package.json ├── plugin │ ├── highlight │ │ └── highlight.js │ ├── markdown │ │ ├── example.html │ │ ├── example.md │ │ ├── markdown.js │ │ └── marked.js │ ├── math │ │ └── math.js │ ├── multiplex │ │ ├── client.js │ │ ├── index.js │ │ ├── master.js │ │ └── package.json │ ├── notes-server │ │ ├── client.js │ │ ├── index.js │ │ └── notes.html │ ├── notes │ │ ├── notes.html │ │ └── notes.js │ ├── print-pdf │ │ └── print-pdf.js │ ├── search │ │ └── search.js │ └── zoom-js │ │ └── zoom.js └── test │ ├── examples │ ├── assets │ │ ├── image1.png │ │ └── image2.png │ ├── 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