├── .Rbuildignore ├── .covrignore ├── .github ├── .gitignore └── workflows │ ├── R-CMD-check.yaml │ └── rhub.yaml ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── NEWS.md ├── R ├── Algorithm.SDM.R ├── Ensemble.SDM.R ├── Env.R ├── Occurrences.R ├── PA.select.R ├── SDM.R ├── SSDM.R ├── Stacked.SDM.R ├── accuracy.R ├── checkargs.R ├── data.values.R ├── ensemble.R ├── ensemble_modelling.R ├── evaluate.R ├── evaluate.axes.R ├── get_PA.R ├── get_model.R ├── gui.R ├── load_model.R ├── load_occ.R ├── load_var.R ├── mapDiversity.R ├── modelling.R ├── optim.thresh.R ├── plot.model.R ├── project.R ├── save.model.R ├── stack_modelling.R ├── stacking.R ├── update.stack.R ├── utils-pipe.R └── zzz.R ├── README.md ├── SSDM.Rproj ├── ToDo.md ├── codecov.yml ├── cran-comments.md ├── data ├── Env.rda └── Occurrences.rda ├── examples └── SSDM.gif ├── inst ├── CITATION ├── extdata │ ├── Occurrences.csv │ ├── RAINFALL.tif │ ├── SUBSTRATE.tif │ └── TEMPERATURE.tif └── shiny │ └── gui │ ├── server.R │ └── ui.R ├── man ├── Algorithm.SDM-class.Rd ├── Ensemble.SDM-class.Rd ├── Env.Rd ├── Occurrences.Rd ├── SSDM.Rd ├── Stacked.SDM-class.Rd ├── ensemble.Rd ├── ensemble_modelling.Rd ├── evaluate.Rd ├── gui.Rd ├── load.model.Rd ├── load_occ.Rd ├── load_var.Rd ├── mapDiversity.Rd ├── modelling.Rd ├── pipe.Rd ├── plot.model.Rd ├── project.Rd ├── save.model.Rd ├── stack_modelling.Rd ├── stacking.Rd └── update-Stacked.SDM-method.Rd ├── tests ├── testthat.R └── testthat │ ├── test_Algorithm.SDM.R │ ├── test_checkargs.R │ ├── test_ensemble.R │ ├── test_ensemble_modelling.R │ ├── test_load_occ.R │ ├── test_load_var.R │ ├── test_modelling.R │ ├── test_stack_modelling.R │ └── test_stacking.R └── vignettes ├── GUI.Rmd ├── GUI ├── Advanced.png ├── Intermediate.png ├── basic.png ├── launch.png ├── load_occ.png ├── load_var.png ├── save.png ├── species.png └── stack.png ├── SSDM.Rmd ├── SSDM.html └── SSDM ├── plot.png └── workflow.png /.Rbuildignore: 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