├── Cross_Validation.R ├── DEgenesMAST.R ├── LICENSE ├── README.md ├── Scripts ├── run_ACTINN.py ├── run_CHETAH.R ├── run_CaSTLe.R ├── run_Cell_BLAST.py ├── run_DigitalCellSorter.py ├── run_Garnett_CV.R ├── run_Garnett_Pretrained.R ├── run_LAmbDA.py ├── run_LDA.py ├── run_LDA_rejection.py ├── run_NMC.py ├── run_RF.py ├── run_SCINA.R ├── run_SVM.py ├── run_SVM_rejection.py ├── run_SingleR.R ├── run_kNN50.py ├── run_kNN9.py ├── run_moana.py ├── run_scID.R ├── run_scPred.R ├── run_scVI.py ├── run_scmap.R └── run_singleCellNet.R ├── Snakemake ├── Cross_Validation.R ├── DEgenesMAST.R ├── Dockerfiles │ ├── baseline │ │ └── Dockerfile │ ├── cell_blast │ │ └── Dockerfile │ ├── chetah │ │ ├── Dockerfile │ │ └── install_packages.R │ ├── cross_validation │ │ ├── Dockerfile │ │ └── install_packages.R │ ├── garnett │ │ ├── Dockerfile │ │ └── install_packages.R │ ├── scid │ │ ├── Dockerfile │ │ └── install_packages.R │ ├── scmap │ │ ├── Dockerfile │ │ └── install_packages.R │ ├── scvi │ │ └── Dockerfile │ ├── singlecellnet │ │ ├── Dockerfile │ │ └── install_packages.R │ └── singler │ │ ├── Dockerfile │ │ └── install_packages.R ├── LICENSE ├── README.md ├── Scripts │ ├── run_ACTINN.py │ ├── run_CHETAH.R │ ├── run_CaSTLe.R │ ├── run_Cell_BLAST.py │ ├── run_DigitalCellSorter.py │ ├── run_Garnett_CV.R │ ├── run_Garnett_Pretrained.R │ ├── run_LAmbDA.py │ ├── run_LDA.py │ ├── run_LDA_rejection.py │ ├── run_NMC.py │ ├── run_RF.py │ ├── run_SCINA.R │ ├── run_SVM.py │ ├── run_SVM_rejection.py │ ├── run_SingleR.R │ ├── run_kNN50.py │ ├── run_kNN9.py │ ├── run_moana.py │ ├── run_scID.R │ ├── run_scPred.R │ ├── run_scVI.py │ ├── run_scmap.R │ ├── run_scmapcell.R │ ├── run_scmapcluster.R │ ├── run_scmaptotal.R │ └── run_singleCellNet.R ├── Snakefile ├── evaluate.R ├── example.config.yml ├── rank_gene_dropouts.py └── rulegraph.png ├── evaluate.R └── rank_gene_dropouts.py /Cross_Validation.R: -------------------------------------------------------------------------------- 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