├── DESCRIPTION ├── NAMESPACE ├── R ├── ArtifClusterG.R ├── Facet.line.plot.R ├── Facet.network.R ├── MatCorPlot.R ├── MatCorPlot2.R ├── Miccorplot3.R ├── PolyRdmNotdCirG.R ├── PolygonClusterG.R ├── PolygonModsquareG.R ├── PolygonRrClusterG.R ├── Robustness.Random.removal.ts.R ├── Robustness.Targeted.removal.ts.R ├── Robustness.X.removal.2.R ├── ZS.net.module.R ├── ZiPiPlot.R ├── alpha-diversity.R ├── barMainplot.R ├── cir.maptree2.R ├── cir.squ.R ├── cir.squ2.R ├── collinkh.R ├── collinkh2.R ├── collinkhx.R ├── collinkhx2.R ├── community.stability.ts.R ├── corBionetwork.st.R ├── corBionetwork2.R ├── corBiostripe.R ├── corBiostripeBig.R ├── corMicro.R ├── cor_Big_micro.R ├── cor_Big_micro2.R ├── cor_env_ggcorplot.R ├── cor_heat.R ├── cor_link.dat.R ├── cor_link.two.R ├── cor_link3.R ├── cor_linkj.R ├── cor_linkx.R ├── culculate_node_axis.R ├── data.module.Facet.line.R ├── div_culculate.R ├── div_network.R ├── edgeBuild.R ├── facet.zipi.R ├── ggflowerplot.R ├── keystone_network_env.R ├── layout.forceatlas2.R ├── matcorplotj.R ├── merge16S_ITS.R ├── merge_micro.R ├── model_Gephi.2.R ├── model_Gephi.3.R ├── model_filled_circle.R ├── model_igraph.R ├── model_igraph2.R ├── model_maptree.R ├── model_maptree2.R ├── model_maptree_group.R ├── modulGClustG.R ├── module.compare.m.ts.R ├── module.compare.net.pip.R ├── module.cor.env.R ├── module.cor.netproperties.R ├── module.roles.R ├── module_display.2.R ├── multi.heap.R ├── natural.con.microp.R ├── natural.con.microp.ts.R ├── negative.correlation.ratio.ts.R ├── net.pro.ts.R ├── net_properties.4.R ├── net_properties.R ├── net_properties2.R ├── net_properties3.R ├── network.2.g.R ├── network.i.R ├── network.pip.R ├── network2.R ├── network_module.R ├── network_stable.R ├── networkplot.R ├── node.edge.R ├── nodeEdge.R ├── node_properties.R ├── nodeadd.R ├── outputgephi.R ├── polygonMaptreeG.R ├── ps.group.mean2.R ├── ps_merge_Tax.R ├── ranSNEClusterG.R ├── randomClusterG.R ├── rank.network.R ├── tax_glom_wt.2.R ├── tax_glom_wt.R ├── tax_glom_wtTop.R ├── two.cor.R ├── two.cor2.R ├── utls.R └── utls2.R ├── README.md ├── data ├── cor.rda ├── edge.rda ├── env.rda ├── env1.rda ├── igraph.rda ├── nodes.rda ├── ps.rda ├── ps16s.rda └── psITS.rda ├── ggClusterNet.Rproj └── man ├── ArtifCluster.Rd ├── MatCorPlot.Rd ├── MatCorPlot2.Rd ├── PolyRdmNotdCirG.Rd ├── PolygonClusterG.Rd ├── PolygonMaptreeG.Rd ├── PolygonModsquareG.Rd ├── PolygonRrClusterG.Rd ├── ZiPiPlot.Rd ├── corBionetwork.Rd ├── corBiostripe.Rd ├── corBiostripeBig.Rd ├── corMicro.Rd ├── cor_Big_micro.Rd ├── cor_Big_micro2.Rd ├── culculate_node_axis.Rd ├── div_culculate.Rd ├── div_network.Rd ├── edgeBuild.Rd ├── filter_OTU_ps.Rd ├── filter_OTU_ps2.Rd ├── ggflower.Rd ├── inputMicro.Rd ├── model_Gephi.2.Rd ├── model_igraph.Rd ├── model_igraph2.Rd ├── model_maptree.Rd ├── model_maptree2.Rd ├── modulGroup.Rd ├── module.roles.Rd ├── net_properties.Rd ├── network.2.Rd ├── network.2.g.Rd ├── network.Rd ├── network.i.Rd ├── network.pip.Rd ├── nodeEdge.Rd ├── node_properties.Rd ├── nodeadd.Rd ├── outputgephi.Rd ├── plot_zoom_png.png ├── ps_merge_Tax.Rd ├── ranSNEClusterG.Rd ├── rand.remov.once.Rd ├── randomClusterG.Rd ├── scale_micro.Rd ├── tax_glom_wt.Rd ├── tax_glom_wtTop.Rd ├── vegan_otu.Rd └── vegan_tax.Rd /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/taowenmicro/ggClusterNet/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /NAMESPACE: -------------------------------------------------------------------------------- 1 | exportPattern("^[[:alpha:]]+") 2 | -------------------------------------------------------------------------------- /R/ArtifClusterG.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/taowenmicro/ggClusterNet/HEAD/R/ArtifClusterG.R -------------------------------------------------------------------------------- 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