├── .gitignore ├── LICENSE ├── README.md ├── TCGA_Reports.csv.zip ├── data └── tcga_metadata │ └── tcga_patient_to_cancer_type.csv ├── eval_metrics.py ├── final_report_cleaning.py ├── post_process_aws_response.py ├── run_aws_textract.py ├── test_model.py ├── train_model.py └── training_set_split.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tatonetti-lab/tcga-path-reports/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tatonetti-lab/tcga-path-reports/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tatonetti-lab/tcga-path-reports/HEAD/README.md -------------------------------------------------------------------------------- /TCGA_Reports.csv.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tatonetti-lab/tcga-path-reports/HEAD/TCGA_Reports.csv.zip -------------------------------------------------------------------------------- /data/tcga_metadata/tcga_patient_to_cancer_type.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tatonetti-lab/tcga-path-reports/HEAD/data/tcga_metadata/tcga_patient_to_cancer_type.csv -------------------------------------------------------------------------------- /eval_metrics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tatonetti-lab/tcga-path-reports/HEAD/eval_metrics.py -------------------------------------------------------------------------------- /final_report_cleaning.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tatonetti-lab/tcga-path-reports/HEAD/final_report_cleaning.py -------------------------------------------------------------------------------- /post_process_aws_response.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tatonetti-lab/tcga-path-reports/HEAD/post_process_aws_response.py -------------------------------------------------------------------------------- /run_aws_textract.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tatonetti-lab/tcga-path-reports/HEAD/run_aws_textract.py -------------------------------------------------------------------------------- /test_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tatonetti-lab/tcga-path-reports/HEAD/test_model.py -------------------------------------------------------------------------------- /train_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tatonetti-lab/tcga-path-reports/HEAD/train_model.py -------------------------------------------------------------------------------- /training_set_split.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tatonetti-lab/tcga-path-reports/HEAD/training_set_split.py --------------------------------------------------------------------------------