├── .gitignore ├── README.md ├── data ├── EPA-jplace.jplace ├── H3-tree.tree ├── RAxML_bipartitionsBranchLabels.H3 ├── beast_mcc-beast.tree ├── codeML-mlc ├── compra-NHX.nhx ├── mr-bayes.tre ├── rst └── sample-phylip.phy ├── global.R ├── server.R ├── tree-subset-shiny.Rproj └── ui.R /.gitignore: -------------------------------------------------------------------------------- 1 | .Rproj.user 2 | .Rhistory 3 | .RData 4 | .Ruserdata 5 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | # Tree Subset Shiny 2 | This repository contains the code for a shiny app that allows for the visualization of subset phylogentic trees. This feature is useful as some phylogentic trees can be very hard to inspect as a whole, especially when there are extremely large number of nodes. This app uses a function named `tree_subset` (currently in development version of [`treeio`](https://github.com/GuangchuangYu/treeio) package (version >= 1.5.1.2)). This app allows for tree objects to be uploaded to the app and then for different tips to be selected to view the phylogentic relatives of that tip. 3 | 4 | 5 | Currently, this application is not being hosted anywhere, so to use it you will need to clone this repo and run the application locally. This intro assumes that you have R, RStudio, and git installed on your computer. If you do not please see [here](http://stat545.com/block000_r-rstudio-install.html) for R and RStudio and [here](http://happygitwithr.com/) for git. 6 | 7 | To get this app up and running locally, follow these steps: 8 | 9 | 1. Open a new session of RStudio and click the light blue cube with the green plus sign in the top left corner of the window. 10 | 2. Select Version Control in the pop up window and then select Git on the next screen. 11 | 3. Copy and paste the url from this repos home page into the top box and select where on your computer you would like the contents of this repo to be saved. The resulting folder will likely be named `tree-subset-shiny` by default, but if not, it is recommneded you name it that. 12 | 4. Select Create Project. This will clone the entire repo into a folder of your choice (see #4). 13 | 5. Run the following commands in your console window to install all required packages: 14 | 15 | ``` 16 | install.packages(c("shiny", "shinyjs", "tidyverse", "ggtree", "tidytree", "devtools", "shinyalert")) 17 | 18 | devtools::install_github("GuangchuangYu/treeio") 19 | ``` 20 | 21 | 6. Open either the `ui.R`, `server.R`, or `global.R` file. 22 | 7. No matter which of these files you open, you should see a button in the top right portion of the Source pane that says "Run App". Click this button! 23 | 8. A pop-up window will appear. You can either view the app in this window or in the web browser by clicking the "Open in Browser" button in the top left of the pop-up window. Personally, I prefer to view it in the browser. 24 | 9. Now, you should be off and running! Select a `.tree` file on your computer and subset away! 25 | 26 | 27 | 28 | 29 | 30 | -------------------------------------------------------------------------------- /data/H3-tree.tree: -------------------------------------------------------------------------------- 1 | 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2 | -------------------------------------------------------------------------------- /data/RAxML_bipartitionsBranchLabels.H3: -------------------------------------------------------------------------------- 1 | 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2 | -------------------------------------------------------------------------------- /data/beast_mcc-beast.tree: -------------------------------------------------------------------------------- 1 | #NEXUS 2 | 3 | Begin taxa; 4 | Dimensions ntax=15; 5 | Taxlabels 6 | A_1995 7 | B_1996 8 | C_1995 9 | D_1987 10 | E_1996 11 | F_1997 12 | G_1992 13 | H_1992 14 | I_1994 15 | J_1983 16 | K_2013 17 | L_1980 18 | M_1997 19 | N_2010 20 | O_1998 21 | ; 22 | End; 23 | 24 | Begin trees; 25 | Translate 26 | 1 A_1995, 27 | 2 B_1996, 28 | 3 C_1995, 29 | 4 D_1987, 30 | 5 E_1996, 31 | 6 F_1997, 32 | 7 G_1992, 33 | 8 H_1992, 34 | 9 I_1994, 35 | 10 J_1983, 36 | 11 K_2013, 37 | 12 L_1980, 38 | 13 M_1997, 39 | 14 N_2010, 40 | 15 O_1998 41 | ; 42 | tree TREE1 = [&R] 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43 | End; 44 | -------------------------------------------------------------------------------- /data/codeML-mlc: -------------------------------------------------------------------------------- 1 | 15 2148 2 | 3 | A ATG GAA GAC TTT GTG CGA CAA TGC TTC AAT CCA ATG ATC GTC GAG CTT GCG GAA AAG GCA ATG AAA GAA TAT GGG GAA GAT CCG AAA ATC GAA ACA AAC AAA TTC GCA TCA ATA TGC ACA CAC TTA GAA GTC TGC TTC ATG TAC TCT GAT TTC CAC TTC ATC GAC GAA CGA GGC GAA TCA ACT ATT ATA GAA TCT GGC GAT CCA AAT GCG TTG TTG AAA CAC CGA TTT GAA ATA ATC GAA GGG AGA GAC CGA ACA ATG GCC TGG ACA GTG GTG AAT AGT ATC TGC AAC ACC ACT GGA GTC GAA AAA CCC AAA TTT CTC CCG GAT CTG TAT GAC TAC AAG GAA AAC CGA TTC ATT GAA ATT GGA GTG ACG AGG AGG GAA GTC CAC ATA TAT TAC CTA GAG AAA GCC AAT AAA ATA AAA TCC GAG AAG ACA CAC ATC CAC ATT TTC TCA TTC ACT GGA GAA GAG ATG GCC ACC AAA GCA GAT TAC ACT CTT GAC GAA GAA AGC AGG GCA AGA ATC AAA ACC AGG CTG TTC ACC ATA AGG CAG GAA ATG GCC AGC AGG GGT CTA TGG GAT TCC TTT CGT CAG TCC GAA AGA GGC GAA GAA ACA ATT GAA GAA AGA TTT GAA ATC ACA GGA ACC ATG CGC AGG CTT GCC GAC CAA AGT CTC CCA CCG AAC TTC TCC AGC CTT GAA AAC TTT AGA GCC TAT GTG GAT GGA TTC GAA CCG AAC GGC TGC ATT GAG GGC AAG CTT TCT CAA ATG TCA AAA GAA GTG AAC GCC AGA ATC GAG CCA TTT CTA AAG ACA ACA CCA CGC CCT CTC AGA TTG CCT AAT GGG CCT CCC TGC TCT CAG CGG TCG AAA TTC TTG CTG ATG GAT GCT CTG AAA TTA AGC ATT GAG GAC CCG AGC CAC GAA GGG GAG GGG ATA CCG CTA TAT GAT GCG ATC AAA TGC ATG AAA ACG TTC TTC GGG TGG AAA GAG CCC AAC ATC ATC AAA CCA CAT GAG AAA GGC ATA AAC CCC AAT TAT CTC CTG ACT TGG AAG CAG GTG CTA GCA GAA CTT CAG GAC ATT GAA AAT GAA GAG AAG ATT CCA AGG ACA AAG AAC ATG AAG AAA ACA AGC CAA TTA AAG TGG GCA CTC GGT GAG AAC ATG GCA CCG GAG AAG GTG GAC TTT GAG GAT TGC AAA GAT GTC AAC GAC TTG AAA CAG TAC AAC AGT GAT GAG CCA GAG CCC AGA TCA CTA GCA TGT TGG ATC CAG AAT GAA TTC AAC AAG GCG TGT GAA CTG ACT GAC TCA AGC TGG GTA GAA CTT GAT GAA ATA GGG GAA GAT GTT GCC CCA ATC GAA CAC ATT GCA AGC ATG AGA CGG AAC TAT TTT ACA GCA GAG GTG TCC CAC TGC AGG GCT ACT GAA TAC ATA ATG AAG GGA GTG TAC ATA AAT ACA GCT TTG CTC AAT GCA TCT TGT GCA GCC ATG GAT GAC TTT CAA CTG ATT CCA ATG ATA AGT AAA TGC AGA ACC AAA GAA GGA AGA CGG AAA ACA AAC CTA TAT GGA TTC ATT ATA AAA GGA AGA TCT CAT TTG AGG AAT GAT ACC GAT GTG GTA AAC TTT GTA AGT ATG GAA TTT TCC CTT ACC GAC CCA AGG TTG GAA CCA CAT AAA TGG GAA AAG TAT TGT GTT CTT GAA ATA GGG GAT ATG CTC CTG CGA ACT GCA GTA GGC CAA GTG TCA AGA CCC ATG TTT CTG TAT GTG AGA ACC AAT GGG ACC TCC AAG ATC AAG ATG AAA TGG GGT ATG GAA ATG AGA CGC TGC CTT CTT CAA TCT CTC CAA CAG ATT GAG AGC ATG ATT GAA GCT GAA TCC TCC GTC AGA GAG AAA GAC CTG ACC AAA GAA TTC TTT GAA AAC AAA TCA GAA ACA TGG CCA ATT GGA GAA TCA CCT AAG GGA GTG GAG GAA GGT TCC ATC GGG AAG GTG TGC AGA ACC TTA CTA GCA AAA TCT GTA TTC AAT AGC CTA TAT GCA TCT CCG CAA CTC GAG GGG TTC TCA GCT GAA TCG AGA AAA CTG CTA CTC ATT GTT CAG GCG CTT AGG GAT AAC CTG GAA CCT GGA ACC TTC GAT CTT GAA GGG CTA TAT GAA GCA ATT GAG GAG TGC CTG ATT AAT GAT CCC TGG GTT TTG CTT AAT GCA TCT TGG TTC AAC TCC TTC CTC ACA CAT GCA CTA AGA 4 | B ATG GAA GAC TTT GTG CGA CAA TGC TTC AAT CCA ATG ATC GTC GAG CTT GCG GAA AAG GCA ATG AAA GAA TAT GGG GAA GAT CCG AAA ATC GAA ACA AAC AAA TTC GCA TCA ATA TGC ACA CAC TTA GAA GTC TGC TTC ATG TAC TCT GAT TTC CAC TTC ATC GAC GAA CGA GGC GAA TCA ACT ATT ATA GAA TCT GGC GAT CCA AAT GCG TTG CTG AAA CAT CGA TTT GAA ATA ATC GAA GGG AGA GAC CGA ACA ATG GCC TGG ACA GTG GTG AAT AGT ATC TGC AAC ACC ACG GGA GTC GAA AAA CCC AAA TTT CTC CCG GAT CTG TAT GAC TAC AAG GAA AAC CGA TTC ATT GAA ATT GGA GTG ACG AGG AGG GAA GTC CAC ATA TAT TAC CTA GAG AAA GCC AAT AAA ATA AAA TCC GAG AAG ACA CAC ATC CAC ATT TTC TCA TTC ACT GGA GAA GAG ATG GCC ACC AAA GCA GAT TAC ACT CTT GAC GAA GAA AGC AGG GCA AGA ATC AAA ACC AGG CTG TTC ACC ATA AGG CAG GAA ATG GCC AGC AGA GGT CTA TGG GAT TCC TTT CGT CAG TCC GAA AGA GGC GAA GAA ACA ATT GAA GAA AGA TTT GAA ATC ACA GGA ACC ATG CGC AGG CTT GCC GAC CAA AGT CTC CCA CCG AAC TTC TCC AGC CTT GAA AAC TTT AGA GCC TAT GTG GAT GGA TTC GAA CCG AAC GGC TGC ATT GAG GGA AAG CTT TCT CAA ATG TCA AAA GAA GTG AAC GCC AGA ATC GAG CCA TTT CTA AAG ACA ACA CCA CGC CCT CTC AGA TTG CCT AAT GGG CCT CCC TGT TCT CAG CGG TCG AAA TTC TTG CTG ATG GAT GCT CTG AAA TTA AGC ATT GAG GAC CCG AGC CAC GAA GGG GAG GGG ATA CCG CTA TAT GAT GCG ATC AAA TGC ATG AAA ACT TTC TTC GGG TGG AAA GAG CCC AAC ATT ATC AAA CCA CAT GAG AAA GGC ATA AAC CCC AAC TAT CTC CTG ACT TGG AAG CAG GTG CTA GCA GAA CTT CAG GAC ATT GAG AAT GAA GAG AAG ATT CCA AGG ACA AAG AAC ATG AAA AAA ACA AGC CAA TTA AAG TGG GCA CTC GGT GAG AAC ATG GCA CCG GAG AAG GTG GAC TTT GAG GAT TGC AAA GAT GTC AAC GAC CTG AAA CAG TAC GAC AGT GAT GAG CCA GAG CCC AGA TCA CTA GCA TGT TGG ATC CAG AAT GAA TTC AAC AAG GCA TGT GAA TTG ACT GAT TCA AGT TGG GTA GAA CTT GAT GAA ATA GGG GAA GAT GTT GCC CCA ATC GAA CAC ATT GCA AGC ATG AGA CGA AAC TAT TTT ACG GCT GAG GTG TCC CAC TGC AGG GCT ACT GAA TAC ATA ATG AAG GGA GTG TAC ATA AAT ACA GCT CTG CTC AAT GCA TCT TGT GCA GCC ATG GAT GAC TTC CAA CTG ATT CCA ATG ATA AGT AAA TGC AGA ACC AAA GAA GGA AGA CGG AAA ACA AAC CTA TAT GGA TTC ATT ATA AAA GGA AGA TCT CAT TTG AGG AAT GAT ACC GAT GTG GTA AAC TTT GTA AGT ATG GAA TTT TCC CTT ACC GAC CCA AGG TTG GAA CCA CAT AAA TGG GAA AAG TAT TGT GTT CTT GAA ATA GGG GAC ATG CTC CTG CGA ACT GCA GTA GGC CAA GTG TCA AGA CCC ATG TTT CTG TAT GTG AGA ACC AAT GGG ACC TCC AAG ATC AAG ATG AAA TGG GGT ATG GAA ATG AGA CGC TGT CTT CTT CAA TCT CTC CAA CAG ATT GAG AGC ATG ATT GAA GCT GAA TCC TCC GTC AAA GAG AAA GAC CTG ACC AAG GAA TTC TTT GAA AAC AAA TCA GAA ACA TGG CCA ATT GGA GAA TCA CCT AAG GGA GTG GAG GAA GGT TCC ATC GGG AAG GTG TGT AGA ACC TTA CTA GCA AAA TCT GTA TTC AAT AGC CTA TAT GCA TCT CCG CAA CTC GAG GGG TTC TCA GCT GAA TCG AGA AAA CTG CTA CTC ATT GTT CAG GCA CTT AGG GAC AAC CTG GAA CCT GGA ACC TTT GAT CTT GAA GGG CTA TAT GAA GCA ATC GAG GAG TGC CTG ATT AAT GAT CCC TGG GTT TTG CTT AAT GCA TCT TGG TTC AAC TCC TTC CTC ACA CAT GCA CTA AGA 5 | C ATG GAA GAC TTT GTG CGA CAA TGC TTC AAT CCA ATG ATC GTC GAG CTT GCG GAA AAG GCA ATG AAA GAA TAT GGG GAA GAT CCG AAA ATC GAA ACG AAC AAA TTC GCA TCA ATA TGC ACA CAC TTA GAA GTC TGC TTC ATG TAC TCT GAT TTC CAC TTC ATT GAC GAA CGA GGC GAA TCA ACC ATT ATA GAA TCT GGC GAT CCG AAT GCA TTG TTG AAA CAT CGA TTT GAA ATA ATC GAA GGG AGA GAC CGA ACA ATG GCC TGG ACA GTG GTG AAT AGT ATC TGC AAC ACC ACG GGA GTC GAG AAA CCC AAA TTT CTT CCG GAT CTG TAT GAC TAC AAG GAA AAC CGA TTC ATT GAA ATT GGA GTA ACG AGG AGG GAA GTC CAC ATA TAC TAC CTA GAG AAA GCC AAT AAA ATA AAA TCA GAG AAG ACA CAC ATC CAC ATT TTC TCA TTC ACT GGA GAA GAG ATG GCC ACC AAA GCA GAT TAC ACT CTT GAC GAA GAG AGC AGA GCA AGA ATC AAA ACC AGG CTG TTC ACC ATA AGG CAG GAA ATG GCC AGC AGG GGT CTA TGG GAT TCC TTT CGT CAG TCC GAA AGA GGC GAA GAA ACA ATT GAA GAA AGA TTT GAA ATC ACA GGA ACC ATG CGC AGG CTT GCC GAC CAA AGT CTC CCA CCG AAC TTC TCC AGC CTT GAA AAC TTT AGA GCC TAT GTG GAT GGA TTC GAA CCG AAC GGC TGC ATT GAG GGC AAG CTT TCT CAA ATG TCA AAA GAA GTG AAC GCC AGA ATC GAG CCA TTT CTA AGG ACA ACA CCA CGC CCT CTC AGA TTG CCT AGT GGG CCT CCC TGC TCT CAG CGG TCG AAA TTC TTG CTG ATG GAT GCT CTG AAA TTA AGC ATT GAG GAC CCG AGC CAT GAA GGG GAG GGG ATA CCG CTA TAT GAT GCG ATC AAA TGC ATG AAA ACG TTC TTC GGG TGG AAA GAG CCC AAC ATT ATC AAA CCA CAT GAG AAA GGC ATA AAC CCC AAT TAT CTC ATG ACT TGG AAG CAG GTT CTA GCA GAA CTT CAG GAC ATT GAA AAT GAA GAG AAG ACT CCA AAG ACA AAG AAC ATG AAG AAA ACA AGC CAA TTA AAA TGG GCA CTC GGT GAA AAC ATG GCA CCG GAG AAG GTA GAC TTT GAA GAT TGC AAA GAT GTC AAC GAC CTG AAA CAA TAC GAC AGT GAT GAG CCA GAG CCC AGA TCA CTA GCA TGT TGG ATT CAG AAT GAA TTC AAC AAG GCA TGT GAA TTG ACC GAT TCA AGC TGG GTA GAA CTT GAT GAA ATA GGG GAA GAT GTT GCT CCA ATC GAA CAC ATT GCA AGC ATG AGA CGG AAC TAT TTT ACA GCA GAG GTG TCC CAC TGC AGG GCT ACT GAA TAC ATA ATG AAG GGA GTG TAC ATA AAT ACA GCT TTG CTT AAT GCA TCT TGT GCG GCC ATG GAT GAT TTT CAA CTG ATT CCA ATG ATA AGC AAA TGC AGA ACC AAA GAA GGA AGA CGG AAA ACA AAC CTA TAT GGA TTC ATT ATA AAA GGA AGA TCT CAT TTG AGG AAT GAT ACT GAC GTG GTA AAC TTT GTA AGT ATG GAA TTT TCC CTT ACT GAC CCA AGG TTG GAA CCA CAT AAA TGG GAA AAG TAT TGT GTC CTT GAA ATA GGG GAC ATG CTC CTG CGA ACT GCA GTA GGC CAG GTG TCA AGG CCC ATG TTT CTG TAT GTG AGA ACC AAT GGG ACC TCC AAG ATC AAG ATG AAA TGG GGT ATG GAA ATG AGA CGC TGC CTT CTT CAA TCT CTC CAA CAG ATT GAG AGC ATG ATT GAA GCT GAA TCC TCC GTC AAA GAG AAA GAC CTG ACC AAA GAA TTC TTT GAA AAC AAA TCA GAA ACA TGG CCA ATT GGA GAA TCA CCT AAA GGA GTT GAG GAA GGT TCC ATC GGA AAG GTG TGC AGA ACC TTA CTA GCA AAA TCT GTA TTC AAC AGT CTG TAT GCA TCT CCA CAA CTC GAG GGG TTC TCA GCT GAA TCG AGA AAA TTG CTA CTC ATT GTT CAG GCG CTT AGG GAT AAC CTG GAA CCT GGA ACC TTC GAT CTT GAA GGG CTA TAT GAA GCA ATC GAG GAG TGC CTG ATT AAT GAT CCC TGG GTT TTG CTT AAT GCA TCT TGG TTC AAC TCC TTC CTC ACA CAT GCA CTA AGA 6 | D ATG GAA GAC TTT GTG CGA CAA TGC TTC AAT CCA ATG ATC GTC GAG CTT GCG GAA AAG GCA ATG AAA GAA TAT GGG GAA GAT CCG AAA ATC GAA ACG AAC AAA TTC GCA GCG ATA TGC ACA CAC TTA GAA GTC TGC TTC ATG TAT TCG GAT TTC CAC TTC ATT GAC GAG CGA GGC GAA TCA ATA ATT GTA GAA TCT GGC GAT CCA AAT GCA CTG CTG AAA CAC CGA TTT GAA ATA ATT GAA GGA AGA GAC CGA ACA ATG GCC TGG ACA GTG GTG AAT AGT ATC TGC AAC ACC ACA GGG GTC GAG AAA CCC AGA TTA CTC CCT GAT CTG TAT GAC TAC AAG GAA AAC CGA TTC ATT GAA ATT GGA GTG ACA CGG AGG GAA GTC CAC ATA TAC TAC CTA GAA AAA GCC AAC AAG ATA AAA TCC GAA AAG ACA CAC ATC CAC ATT TTC TCA TTC ACT GGA GAA GAA ATG GCC ACC AAA GCC GAT TAC ACT CTT GAT GAA GAG AGC AGA GCA AGA ATC AAA ACC AGG CTG TTC ACC ATA AGA CAA GAA ATG GCC AGC AGA GGT CTA TGG GAT TCC TTT CGT CAG TCC GAA AGA GGC GAA GAG ACA ATT GAA GAA AGA TTT GAA ATT ACA GGA ACC ATG CGT AGG CTT GCC GAC CAA AGT CTC CCA CCG AAC TTC TCC AGC CTT GAA AAC TTT AGA GCC TAT GTG GAT GGA TTC GAA CCG AAC GGC TGC ATT GAG GGC AAG CTT TCT CAA ATG TCA AAA GAA GTG AAC GCC AGG ATC GAA CCA TTC CTG AAG ACA ACA CCA CGT CCC CTC AGA TTG CCT GAT GGG CCT CCT TGC TCT CAG CGG TCG AAA TTC TTG CTG ATG GAT GCT CTG AAG TTG AGC ATT GAG GAC CCA AGT CAT GAA GGA GAG GGG ATA CCG CTA TAT GAT GCG ATC AAA TGC ATG AAA ACA TTC TTC GGC TGG AAA GAG CCC AAC ATT ATC AAA CCA CAT GAG AAA GGT ATA AAC CCC AAT TAT CTC TTG GCT TGG AAA CAG GTA CTG GCA GAA CTT CAG GAT ATT GAG AAT GAA GAG AAA ATT CCA AAG ACA AAG AAC ATG AAG AAA ACA AGC CAA TTG AAG TGG GCA CTC GGT GAG AAC ATG GCA CCA GAA AAA GTG GAC TTT GAT GAT TGC AAA GAT GTC AGC GAT CTG AAA CAG TAT GAC AGT GAT GAG CCA GAA CCC AGA TCA CTA GCA AGC TGG ATC CAG AGT GAG TTC AAC AAG GCA TGC GAA TTG ACT GAT TCA AGC TGG ATA GAA CTT GAT GAG ATA GGG GAA GAT GTT GCT CCA ATT GAG CAC ATT GCA AGC ATG AGA AGG AAC TAT TTC ACA GCG GAA GTG TCC CAC TGC AGG GCC ACT GAA TAC ATA ATG AAG GGA GTG TAT ATA AAT ACA GCT CTG CTC AAT GCA TCC TGT GCG GCC ATG GAT GAC TCT CAG CTG ATT CCA ATG ATA AGC AAA TGC AGG ACC AAA GAA GGG AGA CGG AAA ACA AAT CTG TAT GGA TTC ATC ATA AAA GGA AGA TCT CAC TTG AGG AAC GAT ACC GAT GTG GTA AAC TTC GTG AGT ATG GAG TTT TCT CTT ACC GAC CCG AGG TTG GAA CCA CAC AAG TGG GAA AAG TAC TGT GTT CTT GAA ATA GGG GAC ATG CTC CTG CGA ACT GCA ATA GGC CAA GTA TCA AGG CCC ATG TTC CTA TAT GTA AGA ACC AAT GGG ACT TCC AAA ATC AAG ATG AAA TGG GGT ATG GAA ATG AGA CGC TGC CTT CTT CAG TCC CTT CAA CAG ATC GAG AGC ATG ACT GAG GCT GAA TCT TCC GTC AAA GAG AAA GAC ATG ACC AAA GAA TTC TTT GAA AAC AAA TCA GAA ACA TGG CCA ATT GGA GAG TCA CCC AAG GGA GTG GAG GAA GGC TCC ATT GGA AAG GTG TGC AGG ACC TTA CTA GCA AAA TCT GTA TTC AAC AGC CTA TAT GCA TCT CCA CAA CTC GAG GGG TTC TCA GCT GAA TCG AGA AAA CTG CTA CTC ATT GTT CAG GCG CTT AGG GAT AAC CTG GAA CCT GGA ACC TTC GAT CTT GGA GGG CTA TAT GAA GCA ATC GAG GAG TGC CTG ATT AAT GAT CCC TGG GTT TTG CTT AAT GCA TCT TGG TTC AAC TCC TTC CTC ACA CAT GCA CTG AGA 7 | E ATG GAA GAC TTT GTG CGA CAA TGC TTC AAT CCA ATG ATC GTC GAG CTT GCG GAA AAG GCA ATG AAA GAA TAT GGG GAA GAT CCG AAA ATC GAA ACG AAC AAA TTC GCA TCA ATA TGC ACA CAC TTA GAA GTC TGC TTC ATG TAC TCT GAT TTC CAC TTC ATT GAC GAA CGA GGT GAA TCA ACC ATT ATA GAA TCT GGC GAT CCA AAT GCA CTG TTG AAA CAC CGA TTT GAA ATA ATC GAA GGA AGA GAC CGA ACA ATG GCC TGG ACA GTG GTG AAT AGC ATC TGC AAC ACC ACG GGA GTC GAG AAA CCC AAA TTT CTT CCA GAT CTG TAT GAC TAC AAG GAA AAC CGA TTC ATT GAA ATT GGA GTA ACG AGG AGG GAA GTC CAC ATA TAC TAC CTA GAG AAA GCC AAT AAA ATA AAA TCA GAG AAG ACA CAC ATC CAC ATT TTC TCA TTC ACT GGA GAA GAG ATG GCC ACC AAA GCA GAT TAC ACT CTT GAC GAA GAG AGC AGG GCA AGA ATC AAA ACC AGG CTG TTC ACC ATA AGG CAG GAA ATG GCC AGC AGG GGT CTA TGG GAT TCC TTT CGT CAG TCC GAA AGA GGC GAA GAA ACA ATT GAA GAA AGA TTT GAA ATC TCA GGA ACC ATG CGC AGG CTT GCC GAC CAA AGT CTC CCA CCG AAC TTC TCC AGC CTT GAA AAC TTT AGA GCC TAT GTG GAT GGA TTC GAA CCG AAC GGC TGC ATT GAG GGC AAG CTT TCT CAA ATG TCA AAA GAA GTG AAC GCC AGA ATC GAG CCA TTT CTA AGG ACA ACA CCA CGC CCT CTC AGA TTG CCT AAT GGG CCT CCC TGC TCC CAG CGG TCG AAA TTC TTG CTG ATG GAT GCT CTG AAA TTA AGC ATT GAG GAC CCG AGC CAC GAG GGG GAG GGG ATA CCG CTA TAT GAT GCG ATC AAA TGC ATG AAA ACG TTC TTC GGT TGG AAA GAG CCT AAC ATT ATC AAA CCA CAT GAG AAG GGC ATA AAC CCC AAT TAT CTC ATG ACT TGG AAG CAG GTG CTA GCA GAA CTT CAG GAT ATT GAA AAT GAA GAG AAG ATT CCA AAG ACA AAG AAC ATG AAG AAA ACA AGC CAA TTA AAG TGG GCA CTC GGT GAA AAC ATG GCA CCG GAG AAA ATA GAC TTT GAA GAC TGC AAA GAT GTC AAC GAC CTG AAA CAG TAT GAC AGT GAT GAG CCA GAG CCC AGA TCA CTA GCA TGC TGG ATT CAG AAT GAA TTC AAC AAG GCA TGT GAA CTG ACC GAT TCA AGC TGG GTA GAA CTT GAT GAA ATA GGG GAA GAT GTT GCC CCA ATC GAA CAC ATT GCA AGC ATG AGA CGG AAC TAT TTT ACA GCA GAG GTG TCC CAC TGC AGG GCT ACT GAA TAC ATA ATG AAG GGA GTG TAC ATA AAT ACG GCT TTG CTT AAT GCA TCT TGT GCG GCC ATG GAT GAT TTT CAA CTG ATT CCA ATG ATA AGC AAA TGC AGA ACC AAA GAA GGA AGA CGG AAA ACA AAC CTA TAT GGA TTC ATT ATA AAA GGA AGA TCA CAT TTG AGG AAT GAT ACC GAC GTG GTA AAC TTT GTA AGT ATG GAA TTT TCC CTT ACC GAC CCA AGG CTG GAA CCA CAT AAA TGG GAA AAG TAT TGT GTT CTT GAA ATA GGG GAC ATG CTC CTG CGA ACT GCA GTA GGC CAA GTG TCA AGG CCC ATG TTT CTG TAT GTT AGA ACC AAT GGG ACC TCC AAG ATC AAG ATG AAA TGG GGT ATG GAA ATG AGA CGC TGC CTT CTT CAA TCT CTC CAA CAG ATT GAG AGC ATG ATT GAA GCT GAA TCC TCC GTC AAA GAG AAA GAC CTG ACC AGA GAA TTC TTT GAA AAC AAA TCG GAA ACA TGG CCA ATT GGA GAA TCA CCT AAG GGA GTG GAG GAA GGT TCC ATC GGA AAG GTG TGC AGA ACC TTA CTA GCA AAA TCT GTA TTC AAC AGC CTA TAC GCA TCT CCA CAA CTC GAG GGG TTC TCA GCT GAA TCA AGA AAA TTG CTA CTC ATT GTT CAG GCG CTT AGG GAT AAC CTG GAA CCT GGA ACC TTC GAT CTT GAA GGG CTA TAT GAA GCA ATC GAG GAG TGC CTG ATT AAT GAT CCC TGG GTT TTG CTT AAT GCA TCT TGG TTC AAC TCC TTC CTC ACA CAT GCA CTA AGA 8 | F ATG GAA GAC TTT GTG CGA CAG TGC TTC AAT CCA ATG ATC GTC GAG CTT GCG GAA AAG GCA ATG AAA GAA TAT GGG GAA GAT CCG AAA ATC GAA ACA AAC AAA TTC GCA TCA ATA TGC ACA CAC TTA GAA GTC TGC TTC ATG TAC TCT GAT TTC CAC TTC ATC GAC GAA CGA GGC GAA TCA ACT ATA ATA GAA TCT GGC GAT CCA AAT GCG CTG CTG AAA CAC CGA TTT GAA ATA ATC GAA GGG AGA GAC CGA ACA ATG GCC TGG ACA GTG GTG AAT AGT ATC TGC AAC ACC ACA GGA GCC GAA AAA CCC AAA TTT CTC CCG GAT CTG TAT GAC TAC AAG GAA AAC CGT TTC ATT GAA ATT GGA GTG ACG AGG AGG GAA GTC CAC ATA TAT TAC CTA GAG AAA GCC AAT AAA ATA AAA TCC GAG AAG ACA CAC ATC CAT ATT TTT TCA TTC ACT GGA GAA GAG ATG GCC ACC AAA GCA GAT TAC ACT CTT GAC GAA GAA AGC AGG GCA AGA ATC AAA ACC AGG CTG TTC ACC ATA AGG CAG GAA ATG GCC AGC AGG GGT CTA TGG GAT TCC TTT CGT CAG TCT GAA AGA GGC GAA GAA ACA ATT GAA GAA AGA TTT GAA ATC ACA GGA ACC ATG CGC AGG CTT GCC GAC CAA AGT CTC CCA CCG AAC TTC TCC AGC CTT GAA AAC TTT AGA GCC TAT GTG GAT GGA TTC GAA CCG AAC GGC TGC ATT GAG GGC AAG CTT TCT CAG ATG TCA AAA GAA GTG AAC GCC AGA ATT GAG CCA TTT CTA AGA ACA ACA CCA CGC CCT CTC AGA TTG CCT AAT GGG CCT CCC TGC CCT CAG CGG TCG AAA TTC TTG CTG ATG GAT GCT CTG AAA TTA AGC ATT GAG GAC CCG AGC CAC GAA GGG GAG GGG ATA CCG CTA TAT GAT GCG ATC AAA TGC ATG AAA ACG TTC TTC GGG TGG AAA GAG CCC AAC ATT ATC AAA CCA CAT GAG AAA GGC ATA AAC CCC AAT TAT CTC CTG ACT TGG AAG CAG GTG CTA GCA GAA CTT CAG GAC ATT GAA AAT GAA GAG AAG ATT CCA AGG ACA AAG AAC ATG AAG AAA ACA AGC CAA TTA AAG TGG GCA CTC GGT GAG AAC ATG GCA CCG GAG AAG GTG GAC TTT GAG GAT TGC AAA GAT GTC AAC GAC TTG AAA CAG TAC AAC AGT GAT GAG CCA GAG CCC AGA TCA CTA GCA TGT TGG ATC CAG AAT GAA TTC AAC AAG GCG TGT GAA CTG ACT GAC TCA AGC TGG GTA GAA CTT GAT GAA ATA GGG GAA GAT GTT GCC CCA ATC GAA CAC ATT GCA AGC ATG AGA CGG AAC TAT TTT ACA GCA GAG GTG TCT CAC TGC AGG GCT ACT GAA TAT ATA ATG AAG GGA GTG TAC ATA AAT ACA GCT TTG CTC AAT GCA TCT TGT GCA GCC ATG GAT GAC TTT CAG CTG ATT CCA ATG ATA AGT AAA TGT AGA ACC AAA GAA GGA AGA CGG AAA ACA AAC CTG TAT GGA TTC ATT ATA AAA GGA AGA TCT CAT TTG AGG AAT GAT ACC GAC GTG GTA AAC TTT GTA AGT ATG GAA TTT TCC CTT ACC GAC CCA AGG TTG GAA CCA CAT AAA TGG GAA AAG TAT TGT GTT CTT GAA ATA GGG GAC ATG ATC CTG CGA ACT GCA GTA GGC CAA GTG TCA AGA CCC ATG TTT CTG TAT GTG AGA ACC AAT GGG ACC TCC AAG ATC AAG ATG AAA TGG GGT ATG GAA ATG AGA CGC TGC CTT CTT CAA TCT CTC CAA CAG ATT GAG AGC ATG ATT GAA GCT GAA TCC TCC GTC AAA GAG AAA GAC CTG ACC AAA GAA TTC TTT GAA AAC AAA TCA GAA ACA TGG CCA ATT GGA GAG TCA CCT AAA GGA GTG GAG GAA GGT TCC ATC GGG AAG GTG TGC AGA ACC TTA CTA GCA AAA TCT GTA TTC AAC AGC CTA TAT GCA TCT CCG CAA CTC GAG GGG TTC TCA GCT GAA TCG AGA AAA CTG CTA CTC ATT GTT CAG GCG CTT AGG GAT AAC CTG GAA CCT GGA ACC TTT GAT CTT GAA GGG CTA TAT GAA GCA ATC GAG GAG TGC CTG ATT AAT GAT CCC TGG GTT TTG CTT AAT GCA TCT TGG TTC AAC TCC TTC CTC ACA CAT GCA CTA AGA 9 | G ATG GTA GAC TTT GTG CGA CAA TGC TTC AAT CCA ATG ATC GTC GAG CTT GCG GAA AAG GCA ATG AAA GAG TAT GGG GAA GAT CCG AAA ATC GAA ACG AAC AAA TTC TCA TCA ATA TGC ACA CAC TTA GAA GTC TGC TTC ATG TAC TCT GAT TTC CAT TTC ATT GAC GAA CGA GGC GAA TCA ACT ATT ATA GAA TCT GGC GAT CCA AAT GCG TTG TTG AAA CAC CGA TTT GAA ATA ATT GAA GGG AGA GAC CGA ACA ATG GCC TGG ACA GTG GTG AAT AGT ATC TGC AAC ACC ACG AGA GTC CAG AAA CCC AAA TTT CTT CCG GAT CTG TAT GAC TAC CAG GAG AAC CGA TTC ATT GAA ATT GGA GTA ACG AGG AGG GAA GTC CAC ATA TAC TAC CTA GAG AAA GCC AAT AAA ATA AAA TCC GAT AAT ACA CAC ATC CAC ATT TTC TCA TTC ACT GGA GAA GAG ATG GCC ACC AAA GCA GAT TAC ACT CTT GAC GAA GAG AGT AGG GCA AGA ATC AAA ACC AGG CTG TTC ACC ATA AGG CAG GAA ATG GCC AGC AGG GGT CTA TGG GAT TCC TTT CGT CAG TCT GAA AGA GGC GAA GAA ACA ATT GAA GAA AGA TTT GAA ATC ACA GGA ACC ATG CGC AGG CTT GCC GAC CAA AGC CTC CCA CCG AAC TTC TCC AGC CTT GAA AAC TTT AGA GCC TAT GTG GAT GGA TTC GAA CCG AAC GGC TGC ATT GAG GGC AAG CTT TCT CAA ATG TCA AAA GAA GTG AAC GCC AGA ATC GAA CCA TTT CTA AGG ACA ACA CCA CGC CCC CTC AGA TTG CCT AAT GGC CCT CCC TGC TCT CAG CGG TCG AAA TTC TTG CTG ATG GAT GCT CTG AAA TTA AGC ATT GAG GAC CCT AGC TAC GAA GGG GAG GGA ATA CCG CTA TAT GAT GCG ATC AAA TGC ATG AAA ACA TTC TTC GGA TGG AAA GAG CCC AAC ATT ATC AAA CCA CAT GAG AAA GGC ATA AAC CCC AAT TAT CTC CTG ACT TGG AAG CAG GTG CTG GCA GAA CTT CAG GAC ATT GAA AAT GAA GAG AAG ATT CCA AAG ACA AAG AAC ATG AAG AAA ACA AGC CAA TTA AAG TGG GCA CTC GGT GAG AAC ATG GCA CCG GAA AAG GTG GAC TTT GAA GAT TGC AAA GAT GTC AAC GAC CTG AAA CAG TAC GAC AGT GAT GAA CCG GAG CCC AGA TCA CTA GCA TGT TGG ATC CAG AAT GAA TTC AAC AAG GCA TGT GAG TTG ACT GAT TCA AGC TGG ATA GAA CTT GAT GAA ATA GGA GAA GAT GTT GCC CCA ATC GAA CAC ATT GCA AGC ATG AGA AGG AAC TAT TTT ACA GCG GAG GTG TCC CAC TGC AGG GCT ACT GAA TAC ATA ATG AAG GGA GTG TAC ATA AAT ACA GCT CTG CTC AAT GCA TCT TGT GCG GCC ATG GAT GAC TTT CAA CTG ATT CCA ATT ATA AGC AAA TGT AGA ACC AAA GAA GGA AGA CGG AAA ACA AAC CTA TAT GGA TTC ATT ATA AAA GGA AGA TCT CAT TTG AGG AAT GAT ACC GAC GTG GTA AAC TTT GTA AGT ATG GAA TTT TCC CTT ACC GAC CCG AGG TTG GAA CCA CAT AAA TGG GAA AAG TAC TGT GTT CTT GAA ATA GGG GAC ATG CTC CTG CGA ACT GCA GTA GGC CAA GTG TCG AGG CCC ATG TTC CTT TAT GTG AGA ACC AAT GGG ACT TCC AAG ATC AAG ATG AAA TGG GGT ATG GAA ATG AGA CGC TGC CTT CTT CAA TCT CTC CAA CAG ATT GAG AGC ATG ATT GAA GCT GAA TCC TCC GTC AAA GAG AAA GAC CTG ACC AAA GAA TTC TTT GAA AAC AAA TCA GAA ACA TGG CCA ATT GGA GAG TCA CCC AAG GGA GTG GAG GAA GGC TCC ATC GGA AAG GTG TGC AGA ACC TTA CTA GCA AAA TCT GTA TTC AAC AGC CTA TAT GCA TCA CCA CAA CTC GAG GGG TTC TCA GCT GAA TCG AGA AAA CTG CTA CTC ATT GTT CAG GCG CTT AGG GAT AAC CTG GAA CCT GGA ACC TTC GAT CTT GGA GGG CTA TAT GAA GCA ATC GAG GAG TGC CTG ATT AAT GAT CCC TGG GTT --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 10 | H ATG GAA GAC TTT GTG CGA CAA TGC TTC AAT CCA ATG ATC GTC GAG CTT GCG GAA AAG GCA ATG AAA GAA TAT GGG GAA GAT CCG AAA ATC GAA ACG AAC AAA TTC GCA TCA GTA TGC ACA CAC TTA GAA GTA TGC TTC ATG TAC TCT GAT TTC CAC TTC ATT GAC GAA CGA GGC GAA TCA ACT ATT ATA GAA TCT GGC GAT CCA AAT GCG TTG TTG AAA CAC CGA TTT GAA ATA ATC GAA GGG AGA GAC CGA ACA ATG GCC TGG ACA GTG GTG AAT AGT ATC TGC AAC ACC ACG GGA GTC GAG AAA CCC AAA TTT CTT CCG GAT CTG TAT GAC TAC AAG GAA AAC CGA TTC ATT GAA ATT GGA GTA ACG AGG AGG GAA GTC CAC ATA TAC TAC CTA GAG AAA GCC AAT AAA ATA AAA TCC GAG AAG ACA CAC ATC CAC ATT TTC TCA TTC ACT GGA GAA GAG ATG GCC ACC AAA GCA GAT TAC ACT CTT GAC GAA GAA AGC AGG GCA AGA ATC AAA ACC AGG CTG TTC ACC ATA AGG CAG GAA ATG GCC AGC AGG GGT CTA TGG GAT TCC TTT CGT CAG TCC GAA AGA GGC GAA GAA ACA ATT GAA GAA AGA TTT GAA ATC ACA GGA ACC ATG CGC AGG CTT GCC GAC CAA AGT CTC CCA CCG AAC TTC TCC AGC CTT GAA AAC TTT AGA GCC TAT GTG GAT GGA TTC GAA CCG AAC GGC TGC ATT GAG GGC AAG CTT TCT CAA ATG TCA AAA GAA GTG AAC GCC AGA ATC GAT CCA TTT CTA AGG ACA ACC CCA CGC CCT CTC AGA TTG CCT AAT GGG CCT CCC TGC TCT CAG CGG TCG AAA TTC TTG CTG ATG GAT GCT CTG AAA TTA AGC ATT GAG GAC CCG AGC CAC GAA GGG GAG GGG ATA CCG CTA TAT GAT GCG ATC AAA TGC ATG AAA ACG TTC TTC GGG TGG AAA GAG CCC AAC ATT ATC AAA CCA CAT GAG AAA GGC ATA AAC CCC AAT TAC CTC CTG ACT TGG AAG CAA GTG CTA GCA GAA CTT CAG GAC ATT GAA AAT GAA GAG AAG ATT CCA AAG ACA AAG AAC ATG AAG AAA ACA AGC CAA TTA AAG TGG GCA CTC GGT GAG AAC ATG GCA CCG GAG AAG GTG GAC TTT GAA GAT TGC AAA GAT GTC AAC GAC CTG AAA CAG TAC GAC AGT GAT GAG CCA GAG CCC AGA TCA CTA GCA TGT TGG ATC CAG AAT GAG TTC AAC AAG GCA TGT GAA TTG ACT GAT TCA AGC TGG GTA GAA CTT GAT GAA ATA GGG GAA GAT GTT GCC CCA ATC GAA CAC ATT GCA AGC ATG AGG CGG AAC TAT TTT ACA GCA GAG GTT TCC CAC TGC AGG GCT ACT GAA TAC ATA ATG AAG GGA GTG TAC ATA AAT ACA GCT TTG CTC AAT GCA TCT TGT GCG GCC ATG GAT GAC TTT CAA CTG ATT CCA ATG ATA AGC AAA TGC AGA ACC AAA GAA GGA AGA CGG AAA ACA AAC CTA TAT GGA TTC ATT ATA AAA GGA AGA TCA CAT TTG AGG AAT GAT ACC GAC GTG GTA AAC TTT GTA AGT ATG GAA TTT TCC CTT ACC GAC CCA AGG TTG GAA CCA CAT AAA TGG GAA AAG TAT TGT GTT CTT GAA ATA GGA GAC ATG CTC CTG CGA ACT GCA GTA GGC CAA GTG TCA AGG CCC ATG TTT CTG TAT GTG AGA ACC AAT GGG ATC TCC AAG ATC AAG ATG AAA TGG GGT ATG GAA ATG AGA CGC TGC CTT CTT CAA TCT CTC CAA CAG ATT GAG AGC ATG ATT GAA GCT GAA TCC TCA GTC AAA GAG AAA GAC CTG ACC AAA GAA TTC TTT GAA AAC AAA TCA GAA ACA TGG CCA ATT GGA GAA TCA CCT AAG GGA GTG GAG GAA GGT TCC ATC GGA AAG GTG TGC AGA ACC TTA CTA GCA AAA TCT GTA TTC AAC AGC CTA TAT GCA TCT CCA CAA CTC GAG GGG TTC TCA GCT GAA TCG AGA AAA CTG CTA CTC ATT GTT CAG GCG CTT AGG GAT AAC CTG GAA CCT GGA ACC TTC GAT CTT GAA GGG CTA TAT GAA GCA ATC GAG GAG TGC CTG ATT AAT GAT CCC TGG GTT TTA CTT AAT GCA TCT TGG TTC AAC TCC TTC CTC ACA CAT GCA CTA AGA 11 | I ATG GAA GAC TTT GTG CGA CAA TGC TTC AAT CCA ATG ATC GTC GAG CTT GCG GAA AAG GCA ATG AAA GAA TAT GGG GAA GAT CCG AAA ATC GAA ACA AAC AAA TTC GCA TCA ATA TGC ACA CAC TTA GAA GTC TGC TTC ATG TAC TCT GAT TTC CAC TTC ATC GAC GAA CGA GGC GAA TCA ACT ATT ATA GAA TCT GGC GAT CCA AAT GCG CTG CTG AAA CAC CGA TTT GAA ATA ATC GAA GGG AGA GAC CGA ACA ATG GCC TGG ACA GTG GTG AAT AGT ATC TGC AAC ACC ACG GGA GTC GAA AAA CCC AAA TTT CTC CCG GAT CTG TAT GAC TAC AAG GAA AAC CGA TTC ATT GAA ATT GGA GTG ACG AGG AGG GAA GTC CAC ATA TAT TAC CTA GAG AAA GCC AAT AAA ATA AAA TCC GAG AAG ACA CAC ATC CAC ATT TTC TCA TTC ACT GGA GAA GAG ATG GCC ACC AAA GCA GAT TAC ACT CTT GAC GAA GAA AGC AGG GCA AGA ATC AAA ACC AGG CTG TTC ACC ATA AGG CAG GAA ATG GCC AGC AGG GGT CTA TGG GAT TCC TTT CGT CAG TCT GAA AGA GGC GAA GAA ACA ATT GAA GAA AGA TTT GAA ATC ACA GGA ACC ATG CGC AGG CTT GCC GAC CAA AGT CTC CCA CCG AAC TTC TCC AGC CTT GAA AAC TTT AGA GCC TAT GTG GAT GGA TTC GAA CCG AAC GGC TGC ATT GAG GGC AAG CTT TCT CAA ATG TCA AAA GAA GTG AAC GCC AGA ATC GAG CCA TTT CTA AGG ACA ACA CCA CGC CCT CTC AGA TTG CCT AAT GGG CCT CCC TGC TCT CAG CGG TCG AAA TTC TTG CTG ATG GAT GCT CTG AAA TTA AGC ATT GAG GAC CCG AGC CAT GAG GGG GAG GGG ATA CCG CTA TAT GAT GCG ATC AAA TGC ATG AAA ACG TTC TTC GGG TGG AAA GAG CCC AAC ATT ATC AAA CCA CAT GAG AAA GGC ATA AAC CCC AAT TAT CTC CTG ACT TGG AAG CAG GTG CTA GCA GAA CTT CAG GAC ATT GAA AAT GAA GAG AAG ATT CCA AAG ACA AAG AAC ATG AAA AAA ACA AGC CAA TTA AAG TGG GCA CTC GGT GAA AAC ATG GCA CCG GAG AAG GTG GAC TTT GAG GAT TGC AAA GAT GTC AAC GAC CTG AAA CAG TAC GAC AGT GAT GAG CCA GAG CCC AGA TCA CTA GCA TGT TGG ATC CAG AAT GAA TTC AAC AAG GCA TGT GAA TTG ACT GAT TCA AGC TGG GTA GAA CTT GAT GAA ATA GGG GAA GAT GTT GCT CCA ATC GAA CAC ATT GCA AGC ATG AGA CGG AAC TAT TTT ACA GCA GAG GTG TCC CAC TGC AGG GCT ACT GAA TAT ATA ATG AAG GGA GTG TAC ATA AAT ACA GCT TTG CTC AAT GCA TCT TGT GCA GCC ATG GAT GAC TTT CAA CTG ATT CCA ATG ATA AGT AAA TGC AGA ACC AAA GAA GGA AGA CGG AAA ACA AAC CTA TAT GGA TTC ATT ATA AAA GGA AGA TCT CAC TTG AGG AAT GAT ACC GAC GTG GTA AAC TTT GTA AGT ATG GAA TTT TCC CTT ACC GAC CCA AGG TTG GAA CCA CAT AAA TGG GAA AAG TAT TGT GTT CTT GAA ATA GGG GAC ATG CTC CTG CGA ACT GCA GTA GGC CAA GTG TCA AGA CCC ATG TTT CTG TAT GTG AGA ACC AAT GGG ACC TCC AAG ATC AAG ATG AAA TGG GGT ATG GAA ATG AGA CGC TGC CTT CTT CAA TCT CTC CAA CAG ATT GAG AGC ATG ATT GAA GCT GAA TCC TCC GTC AAA GAG AAA GAC CTG ACC AAA GAA TTC TTT GAA AAC AAA TCA GAA ACA TGG CCA ATT GGA GAA TCA CCT AAA GGA GTG GAG GAA GGT TCC ATC GGG AAG GTG TGC AGA ACC TTA CTA GCA AAA TCT GTA TTC AAC AGC CTA TAT GCA TCT CCG CAA CTC GAG GGG TTC TCA GCT GAA TCG AGA AAA CTG CTA CTC ATT GTT CAG GCG CTT AGG GAT AAC CTG GAA CCT GGA ACC TTC GAT CTT GAA GGG CTA TAT GAA GCA ATC GAG GAG TGC CTG ATT AAT GAT CCC TGG GTT TTG CTT AAT GCA TCT TGG TTC AAC TCC TTC CTC ACA CAT GCA CTA AGA 12 | J ATG GAA GAC TTT GTG CGA CAA TGC TTC AAT CCA ATG ATC GTC GAG CTT GCG GAA AAG GCA ATG AAA GAA TAT GGG GAA GAT CCG AAA ATC GAA ACG AAC AAA TTC GCA GCA ATA TGC ACA CAC TTA GAA GTC TGC TTC ATG TAC TCT GAT TTC CAC TTC ATT GAC GAA CGA GGC GAA TCA ACA ATT ATA GAA TCT GGC GAT CCA AAT GCG TTA TTG AAA CAC CGA TTT GAA ATA ATC GAA GGG AGA GAC CGA ACA ATG GCC TGG ACA GTG GTG AAT AGT ATC TGC AAC ACC ACG AGA GTC GAG AAA CCC AAA TTT CTT CCG GAT CTG TAT GAC TAC AAG GAA AAC CGA TTC ATT GAA ATT GGA GTG ACG CGG AGG GAA GTC CAC ATA TAC TAC CTA GAA AAA GCC AAC AAG ATA AAA TCC GAG AAG ACA CAC ATC CAC ATT TTC TCA TTC ACT GGA GAA GAA ATG GCC ACC AAA GCA GAT TAC ACT CTT GAC GAA GAG AGC AGG GCA AGA ATC AAA ACC AGG CTG TTC ACC ATA AGG CAG GAA ATG GCC AGC AGG GGT CTA TGG GAT TCC TTT CGT CAG TCC GAG AGA GGC GAA GAG ACA ATT GAA GAA AGA TTT GAG ATC ACA GGA ACC ATG CGC AGG CTT GCC GAC CAA AGT CTC CCA CCG AAC TTC TCC AGC CTT GAA AAC TTT AGA GCC TAT GTG GAT GGA TTC GAA CCG AAC GGC TGC ATT GAG GGC AAG CTT TCT CAA ATG TCA AAA GAA GTG AAC GCC AGA ATC GAG CCA TTT CTC AGG ACA ACA CCA CGT CCC CTC AGA TTG CCT AAT GGG CCT CCC TGC TCT CAG CGG TCG AAA TTC TTG CTG ATG GAT GCT CTG AAA TTA AGC ATT GAG GAC CCG AGC CAT GAA GGG GAG GGG ATA CCG CTA TAT GAT GCG ATC AAA TGC ATG AAA ACA TTC TTC GGA TGG AAA GAG CCC AAC ATT ATC AAA CCA CAT GAG AAA GGC ATA AAC CCT AAT TAT CTC CTG GCT TGG AAG CAG GTA CTG GCA GAA CTT CAG GAC ATT GAA AAT GAA GAG AAG ATC CCA AAG ACA AAG AAC ATG AAG AAA ACA AGC CAA TTG AAG TGG GCA CTC GGT GAG AAC ATG GCA CCG GAA AAA GTG GAC TTT GAA GAT TGC AAA GAT GTC AGC GAT CTG AAA CAG TAT GAC AGT GAT GAG CCA GAG CCC AGA TCA CTA GCA TGT TGG ATC CAG AAT GAA TTC AAC AAG GCA TGT GAA TTG ACT GAT TCA AGC TGG ATA GAA CTT GAT GAA ATA GGG GAA GAT GTT GCC CCA ATT GAG CAC ATT GCA AGC ATG AGA AGG AAC TAT TTC ACA GCG GAG GTG TCC CAC TGC AGG GCT ACT GAA TAC ATA ATG AAG GGA GTG TAC ATA AAT ACA GCT TTG CTC AAT GCA TCT TGT GCG GCC ATG GAT GAC TTT CAA CTG ATT CCA ATG ATA AGC AAA TGC AGA ACC AAA GAA GGA AGA CGG AAA ACA AAC CTA TAT GGA TTC ATT ATA AAA GGA AGA TCT CAT TTG AGG AAT GAT ACC GAC GTG GTA AAT TTT GTA AGT ATG GAG TTT TCC CTT ACC GAC CCG AGA TTG GAA CCA CAT AAA TGG GAA AAG TAT TGT GTT CTT GAA ATA GGG GAC ATG CTC CTG CGA ACT GCA GTA GGC CAA GTG TCA AGG CCC ATG TTC CTG TAT GTG AGA ACC AAT GGG ACT TCC AAG ATC AAG ATG AAA TGG GGT ATG GAA ATG AGA CGC TGC CTT CTT CAA TCT CTC CAA CAG ATT GAG AGC ATG ATT GAA GCT GAA TCT TCC GTC AAA GAG AAA GAC TTG ACC AAA GAA TTC TTT GAA AAC AAG TCA GAA ACA TGG CCA ATT GGA GAG TCA CCC AAG GGA GTG GAG GAA GGC TCC ATC GGA AAG GTG TGC AGA ACC TTA CTA GCA AAA TCT GTA TTC AAC AGT CTA TAT GCA TCT CCA CAA CTC GAG GGG TTC TCA GCA GAA TCG AGA AAA CTG CTA CTC ATT GTT CAG GCG CTT AGG GAT AAC CTG GAA CCT GGA ACT TTC GAT CTT GGG GGG CTA TAT GAA GCA ATC GAG GAG TGC CTG ATT AAT GAT CCC TGG GTT TTG CTT AAT GCA TCT TGG TTC AAC TCC TTC CTC ACA CAT GCA CTG AGA 13 | K ATG GAA GAC TTT GTG CGA CAA TGC TTC AAT CCA ATG ATT GTC GAG CTT GCG GAA AAG GCA ATG AAA GAA TAT GGG GAA GAT CCG AAA ATC GAA ACA AAC AAA TTT GCC GCA ATA TGC ACA CAC TTA GAA GTC TGT TTC ATG TAT TCG GAT TTC CAC TTT ATT GAT GAA CGA GGC GAA TCA ATA ATT GTA GAA TCT GGC GAT CCG AAT GCA TTA TTG AAA CAC CGA TTT GAG ATA ATT GAA GGG AGA GAC CGA ACA ATG GCC TGG ACA GTG GTG AAT AGC ATT TGC AAC ACC ACA GGA GTC GAT AAG CCT AAA TTC CTA CCT GAT TTG TAT GAT TAT AAA GAA AAC CGA TTC ATT GAA ATT GGA GTG ACG CGA AGG GAA GTT CAC ATA TAC TAT CTA GAA AAA GCC AAC AAG ATA AAG TCA GAG AAG ACA CAC ATT CAC ATA TTC TCA TTC ACT GGA GAG GAA ATG GCC ACC AAA GCG GAC TAC ACC CTT GAT GAA GAG AGC AGG GCA AGA ATA AAA ACC AGG CTA TTC ACC ATA AGA CAA GAA ATG GCC AGT AGG GGT CTA TGG GAT TCC TTT CGT CAG TCC GAG AGA GGC GAA GAG ACA ATT GAA GAA AGA TTT GAA ATC ACA GGA ACC ATG CGC AGG CTT GCC GAC CAA AGT CTC CCA CCG AAC TTC TCC AGC CTT GAA AAC TTT AGA GCC TAT GTG GAT GGA TTC GAA CCG AAC GGC TGC ATT GAG GGC AAG CTT TCT CAA ATG TCA AAA GAA GTG AAT GCC AGA ATT GAG CCT TTT CTG AAG ACA ACA CCA CGC CCT CTC AGA TTG CCT GAT GGG CCT CCC TGC TCT CAG CGG TCA AAG TTC TTG CTG ATG GAT GCC CTT AAA TTA AGC ATC GAA GAC CCG AGT CAT GAG GGG GAA GGT ATA CCG CTG TAT GAT GCA ATC AAA TGC ATG AAG ACA TTT TTT GGC TGG AAA GAG CCC AAC ATC GTA AAA CCA CAT GAA AAA GGC ATA AAT CCC AAT TAC CTC CTG GCT TGG AAG CAG GTG CTG GCA GAA CTC CAA GAT ATT GAA AAT GAG GAG AAA ATC CCA AAA ACA AAG AAC ATG AAG AAA ACA AGC CAA TTG AAG TGG GCA CTT GGT GAG AAT ATG GCA CCA GAA AAA GTG GAC TTT GAG GAC TGC AAA GAT ATT AGC GAT CTA AGA CAG TAT GAC AGT GAC GAA CCG GAA TCT AGA TCG CTA GCA AGC TGG GTC CAG AGT GAA TTT AAC AAG GCA TGC GAA CTG ACA GAT TCG AGT TGG ATT GAA CTT GAT GAA ATA GGG GAA GAC ATT GCT CCA ATT GAA CAC ATT GCG AGT ATG AGG AGG AAC TAT TTC ACA GCG GAA GTA TCC CAT TGC AGG GCT ACT GAA TAC ATA ATG AAG GGA GTG TAC ATA AAC ACA GCC CTA TTG AAT GCA TCC TGT GCA GCC ATG GAT GAC TTC CAA CTG ATT CCA ATG ATA AGC AAG TGC AGA ACC AAA GAA GGA AGA CGG AAG ACA AAT CTG TAT GGA TTC ATC ATA AAA GGA AGA TCC CAT TTG AGG AAT GAC ACC GAT GTG GTA AAC TTT GTG AGC ATG GAA TTC TCT CTC ACT GAC CCG AGG CTG GAG CCA CAC AAA TGG GAA AAG TAC TGC GTT CTT GAG ATA GGA GAT ATG CTC CTA CGG ACT GCA ATA GGT CAA GTG TCA AGG CCC ATG TTC CTG TAT GTG AGA ACC AAT GGG ACT TCC AAG ATC AAA ATG AAA TGG GGC ATG GAG ATG AGG CGA TGC CTT CTT CAG TCC CTT CAA CAA ATT GAG AGC ATG ATT GAG GCC GAG TCC TCT GTC AAA GAG AAG GAC ATG ACC AAG GAA TTC TTT GAA AAC AAA TCA GAA ACA TGG CCA ATT GGA GAA TCC CCC AAA GGA GTG GAA GAA GGC TCC ATT GGG AAG GTG TGC AGA ACA TTG TTA GCA AAG TCT GTG TTC AAC AGC CTA TAT GCA TCT CCA CAA CTC GAG GGG TTT TCA GCT GAA TCA AGA AAA TTG CTT CTC ATT GTT CAG GCA CTT AGG GAC AAC CTG GAA CCT GGA ACC TTC GAT CTT GGG GGG CTA TAT GAA GCA ATT GAG GAG TGC CTG ATT AAC GAT CCC TGG GTT TTG CTT AAT GCG TCT TGG TTC AAC TCC TTC CTC ACA CAT GCA TTG AAA 14 | L ATG GAA GAC TTT GTG CGA CAA TGC TTC AAT CCA ATG ATC GTC GAG CTT GCG GAA AAG GCA ATG AAA GAA TAT GGG GAA GAT CCG AAA ATC GAA ACG AAC AAA TTC GCA GCA ATA TGC ACA CAC TTA GAA GTC TGC TTC ATG TAC TCG GAT TTC CAC TTC ATT GAC GAA CGA GGC GAA TCA ACA ATT ATA GAA TCT GGC GAT CCA AAT GCG TTA TTG AAA CAC CGA TTT GAA ATA ATC GAA GGG AGA GAC CGA ACA ATG GCC TGG ACA GTG GTG AAT AGT ATC TGC AAC ACC ACG GGA GTC GAG AAA CCC AAA TTT CTT CCG GAT CTG TAT GAC TAC AAG GAA AAC CGA TTC ATT GAA ATT GGA GTG ACG CGG AGG GAA GTC CAC ATA TAC TAC CTA GAA AAA GCC AAC AAG ATA AAA TCC GAG AAG ACA CAC ATC CAC ATT TTC TCA TTC ACT GGA GAA GAA ATG GCC ACC AAA GCA GAT TAC ACT CTT GAT GAA GAG AGC AGG GCA AGA ATC AAA ACC AGG CTG TTC ACC ATA AGA CAG GAA ATG GCC AGC AGG GGT CTA TGG GAT TCC TTT CGT CAG TCC GAG AGA GGC GAA GAG ACA ATT GAA GAA AGA TTT GAA ATC ACA GGA ACC ATG CGC AGG CTT GCC GAC CAA AGT CTC CCA CCG AAC TTC TCC AGC CTT GAA AAC TTT AGA GCC TAT GTG GAT GGA TTC GAA CCG AAC GGC TGC ATT GAG GGC AAG CTT TCT CAA ATG TCA AAA GAA GTG AAC GCC AGA ATT GAG CCA TTT CTA AGG ACA ACA CCA CGT CCC CTC AGA TTG CCT AAT GGG CCT CCC TGC TCT CAG CGG TCG AAA TTC TTG CTT ATG GAT GCT CTG AAA TTA AGC ATT GAG GAC CCG AGC CAT GAA GGG GAG GGG ATA CCG CTA TAT GAT GCG ATC AAA TGC ATG AAA ACA TTC TTC GGA TGG AAA GAG CCC AAC ATT ATC AAA CCA CAT GAG AAA GGC ATA AAC CCC AAT TAT CTC CTG GCT TGG AAG CAA GTA CTG GCA GAA CTT CAG GAC ATT GAA AAT GAA GAG AAG ATC CCA AAG ACA AAG AAC ATG AAG AAA ACA AGC CAA TTG AAG TGG GCA CTC GGT GAG AAC ATG GCA CCA GAA AAA GTG GAC TTT GAA GAT TGC AAA GAT GTC AGC GAT CTG AAA CAG TAT GAC AGT GAT GAG CCA GAG CCC AGA TCA CTA GCA TGT TGG ATC CAG AAT GAA TTC AAC AAG GCA TGT GAA TTG ACT GAT TCA AGC TGG ATA GAA CTT GAT GAA ATA GGG GAA GAT GTT GCC CCA ATT GAG CAC ATT GCA AGC ATG AGA AGG AAC TAT TTC ACA GCG GAA GTG TCC CAC TGC AGG GCT ACT GAA TAC ATA ATG AAG GGA GTG TAC ATA AAT ACA GCT TTG CTC AAT GCA TCT TGT GCG GCC ATG GAT GAC TTT CAA CTG ATT CCA ATG ATA AGC AAA TGC AGA ACC AAA GAA GGA AGA CGG AAA ACA AAT CTA TAT GGA TTC ATT ATA AAA GGA AGA TCT CAT TTG AGG AAT GAT ACC GAC GTG GTA AAT TTT GTG AGT ATG GAG TTT TCC CTT ACC GAC CCG AGG CTG GAA CCA CAT AAA TGG GAA AAG TAC TGT GTT CTT GAA ATA GGG GAC ATG CTC CTG CGA ACT GCA GTA GGC CAA GTG TCA AGG CCC ATG TTC CTG TAT GTG AGA ACC AAT GGG ACT TCC AAA ATC AAG ATG AAA TGG GGT ATG GAA ATG AGA CGC TGC CTT CTT CAA TCT CTC CAA CAG ATT GAG AGC ATG ATT GAA GCT GAA TCT TCC GTC AAA GAG AAA GAC TTG ACC AAA GAA TTC TTT GAA AAC AAA TCA GAA ACA TGG CCA ATT GGA GAG TCA CCC AAG GGA GT- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 15 | M ATG GAA GAC TTT GTG CGA CAG TGC TTC AAT CCA ATG ATC GTC GAG CTT GCG GAA AAG ACA ATG AAA GAA TAT GGG GAA GAT CCA AAA ATC GAA ACA AAC AAA TTC GCA TCA ATA TGC ACA CAC TTA GAA GTC TGC TTC ATG TAC TCT GAT TTC CAC TTC ATC GAC GAA CGT GGC GAA TCA ACT ATA ATA GAA TCT GGC GAT CCA AAT GCG CTG CTG AAA CAC CGA TTT GAA ATA ATC GAA GGG AGA GAC CGA ACA ATG GCC TGG ACA GTA GTG AAT AGT ATC TGC AAC ACC ACA GGA GCC GAA AAA CCC AAA TTT CTC CCG GAT CTG TAT GAC TAC AAG GAA AAC CGT TTC ATT GAA ATT GGA GTG ACG AGG AGG GAA GTC CAC ATA TAT TAC CTA GAG AAA GCC AAT AAA ATA AAA TCC GAG AAG ACA CAC ATC CAT ATT TTT TCA TTC ACT GGA GAA GAG ATG GCC ACC AAA GCA GAT TAC ACT CTT GAC GAA GAA AGC AGG GCA AGA ATC AAA ACC AGG CTG TTC ACC ATA AGG CAG GAA ATG GCC AGC AGG GGT CTA TGG GAT TCC TTT CGT CAG TCT GAA AGA GGC GAA GAA ACA ATT GAA GAA AGA TTT GAA ATC ACA GGA ACC ATG CGC AGG CTT GCC GAC CAA AGT CTC CCA CCG AAC TTC TCC AGC CTT GAA AAC TTT AGA GCC TAT GTG GAT GGA TTC GAA CCG AAC GGC TGC ATT GAG GGC AAG CTT TCT CAG ATG TCA AAA GAA GTG AAC GCC AGA ATT GAG CCA TTT CTA AGA ACA ACA CCA CGC CCT CTC AGA TTG CCT AAT GGG CCT CCC TGC TCT CAG CGG TCG AAA TTC TTG CTG ATG GAT GCT CTG AAA TTA AGC ATT GAG GAC CCG AGC CAC GAA GGG GAG GGG ATA CCG CTA TAT GAT GCG ATC AAA TGC ATG AAA ACG TTC TTC GGG TGG AAA GAG CCC AAC ATT ATC AAA CCA CAT GAG AAA GGC ATA AAC CCC AAT TAT CTC CTG ACT TGG AAG CAG GTG CTA GCA GAA CTT CAG GAC ATT GAA AAT GAA GAG AAG ATT CCA AGG ACA AAG AAC ATG AAG AAA ACA AGC CAA TTA AAG TGG GCA CTC GGT GAG AAC ATG GCA CCG GAG AAG GTG GAC TTT GAG GAT TGC AAA GAT GTC AAC GAC TTG AAA CAG TAC AAC AGT GAT GAG CCA GAG CCC AGA TCA CTA GCA TGT TGG ATC CAG AAT GAA TTC AAC AAG GCG TGT GAA CTG ACT GAC TCA AGC TGG GTA GAA CTT GAT GAA ATA GGG GAA GAT GTT GCC CCA ATC GAA CAC ATT GCA AGC ATG AGA CGG AAC TAT TTT ACA GCA GAG GTG TCC CAC TGC AGG GCT ACT GAA TAT ATA ATG AAG GGA GTG TAC ATA AAT ACA GCT TTG CTC AAT GCA TCT TGT GCA GCC ATG GAT GAC TTT CAA CTG ATT CCA ATG ATA AGT AAA TGT AGA ACC AAA GAA GGA AGA CGG AAA ACA AAC CTG TAT GGA TTC ATT ATA AAA GGA AGA TCT CAT TTG AGG AAT GAT ACC GAT GTG GTA AAC TTT GTA AGT ATG GAA TTT TCC CTT ACC GAC CCA AGG TTG GAA CCA CAT AAA TGG GAA AAG TAT TGT GTT CTT GAA ATA GGG GAC ATG CTC CTG CGA ACT GCA GTA GGC CAA GTG TCA AGA CCT ATG TTT CTG TAT GTG AGA ACC AAT GGG ACC TCC AAG ATC AAG ATG AAA TGG GGT ATG GAA ATG AGA CGC TGC CTT CTT CAA TCT CTC CAA CAG ATT GAG AGC ATG ATT GAA GCT GAA TCC TCT GTC AAA GAG AAA GAC CTG ACC AAA GAA TTC TTT GAA AAC AAA TCA GAA ACA TGG CCA ATT GGA GAG TCA CCT AAA GGA GTG GAG GAA GGT TCC ATC GGG AAG GTG TGC AGA ACC TTA CTA GCA AAA TCT GTA TTC AAC AGC CTA TAT GCA TCT CCG CAA CTC GAG GGG TTC TCA GCT GAA TCG AGA AAA CTG CTA CTC ATT GTT CAG GCG CTT AGG GAT AAC CTG GAA CCT GGA ACC TTT GAT CTT GAA GGG CTA TAT GAA GCA ATC GAG GAG TGC CTG ATT AAT GAT CCC TGG GTT TTG CTT AAT GCA TCT TGG TTC AAC TCC TTC CTC ACA CAT GCA CTA AGA 16 | N ATG GAA GAC TTT GTG CGA CAA TGC TTC AAT CCA ATG ATT GTC GAG CTT GCG GAA AAG GCA ATG AAA GAA TAT GGG GAA GAT CCG AAA ATC GAA ACG AAC AAA TTT GCC GCA ATA TGC ACA CAC TTG GAA GTC TGT TTC ATG TAT TCG GAT TTC CAC TTT ATT GAT GAA CGG GGC GAA TCA ATA ATT GTA GAA TCT GGC GAT CCG AAC GCA TTA TTG AAA CAC CGA TTT GAG ATA ATT GAA GGA AGA GAC CGA ACA ATG GCC TGG ACA GTG GTG AAT AGT ATC TGC AAC ACC ACA GGG GTC GAC AAG CCT AAA TTC CTC CCA GAT TTG TAT GAC TAC AAA GAG AAC CGA TTC ATT GAA ATT GGA GTG ACA CGA AGG GAA GTT CAC ATA TAC TAT CTA GAA AAA GCT AAC AAG ATA AAA TCG GAG AAG ACA CAC ATT CAC ATA TTC TCA TTC ACT GGA GAG GAA ATG GCC ACC AAA GCA GAC TAT ACT CTT GAT GAA GAG AGC AGA GCA AGA ATC AAA ACC AGG CTG TTC ACC ATA AGG CAA GAA ATG GCC AGT AGG GGT CTA TGG GAT TCC TTT CGT CAG TCC GAG AGA GGC GAA GAG ACA ATT GAA GAA AGA TTT GAA ATC ACA GGA ACC ATG CGC AGG CTT GCC GAC CAA AGT CTC CCA CCG AAC TTC TCC AGC CTT GAA AAC TTT AGA GCC TAT GTG GAT GGA TTC GAA CCG AAC GGC TGC ATT GAG GGC AAG CTT TCT CAA ATG TCA AAA GAA GTG AAC GCC AGA ATT GAG CCA TTT CTG AAG ACA ACA CCA CGC CCT CTT AGA TTA CCT GAT GGG CCT CCC TGC TCT CAG CGG TCG AAG TTC TTG CTG ATG GAT GCT CTC AAA TTA AGC ATC GAA GAC CCG AGC CAT GAG GGG GAA GGT ATA CCA CTA TAT GAT GCA ATC AAA TGC ATG AAG ACA TTT TTC GGC TGG AAA GAG CCC AAC ATC GTA AAA CCA CAT GAA AAA GGC ATA AAC CCC AAT TAC CTC CTG GCT TGG AAG CAG GTG CTG GCA GAA CTC CAA GAT ATT GAA AAT GAA GAG AAA ATC CCA AAA ACA AAG AAC ATG AAG AAA ACA AGC CAA TTA AAA TGG GCA CTT GGT GAG AAT ATG GCA CCA GAG AAA GTA GAC TTT GAG GAC TGC AAA GAT GTT AGC GAT CTA AGA CAG TAT GAC AGT GAT GAA CCA GAG TCT AGA TCG CTA GCA AGC TGG ATC CAG AGC GAA TTC AAC AAG GCA TGC GAA TTG ACA GAT TCG AGT TGG ATT GAA CTT GAT GAA ATA GGG GAG GAC GTT GCT CCA ATT GAG CAC ATT GCG AGT ATG AGA AGA AAC TAT TTC ACA GCG GAA GTA TCC CAT TGC AGG GCT ACT GAA TAC ATA ATG AAG GGA GTG TAC ATA AAC ACA GCC CTG TTG AAT GCA TCC TGT GCA GCC ATG GAT GAC TTC CAA CTG ATT CCA ATG ATA AGC AAG TGC AGG ACC AAA GAA GGG AGA CGG AAG ACA AAT CTG TAT GGA TTC ATT ATA AAG GGG AGA TCC CAT TTG AGG AAT GAC ACT GAT GTG GTA AAC TTT GTG AGC ATG GAA TTC TCT CTT ACT GAC CCG AGG CTG GAG CCA TAC AAG TGG GAA AAG TAC TGT GTC CTC GAG ATA GGA GAC ATG CTA CTA CGG ACT GCA ATA GGC CAA GTA TCA AGG CCC ATG TTC CTG TAT GTG AGA ACC AAT GGG ACT TCC AAG ATT AAG ATG AAA TGG GGC ATG GAG ATG AGG CGA TGC CTT CTT CAA TCC CTT CAA CAA ATT GAA AGC ATG ATT GAG GCC GAG TCT TCT GTC AAA GAG AAG GAC ATG ACC AAA GAA TTC TTT GAA AAC AAA TCA GAA ACA TGG CCA ATT GGA GAA TCC CCC AAA GGG GTG GAG GAA GGC TCC ATT GGG AAG GTG TGC AGA ACA TTA CTA GCA AAA TCT GTG TTC AAC AGC CTA TAT GCA TCT CCA CAA CTC GAG GGA TTT TCA GCT GAA TCA AGA AAA TTG CTT CTC ATT GTT CAG GCA CTT AGG GAC AAC CTT GAA CCT GGG ACC TTT GAT CTT GGG GGG CTA TAT GAA GCA ATT GAG GAG TGC CTG ATT AAC GAT CCC TGG GTT TTG CTT AAT GCG TCT TGG TTC AAC TCC TTC CTC ACA CAT GCA CTG AAA 17 | O ATG GAA GAC TTT GTG AGA CAA TGC TTC AAT CCA ATG ATC GTC GAG CTT GCG GAA AAG GCA ATG AAA GAA TAT GGG GAA GAT CCG AAA ATC GAA ACA AAC AAA TTC GCA TCA ATA TGC ACA CAC TTA GAA GTC TGC TTC ATG TAC TCT GAT TTC CAC TTC ATT GAC GAA AGA GGC GAA TCA ACC ATT ATA GAA TCT GGC GAT CCA AAT GCA CTG TTG AAA CAC CGA TTT GAA ATA ATC GAA GGG AGA GAC CGA ACA ATG GCC TGG ACA GTG GTG AAT AGC ATC TGC CAC ACC ACG GGA GTC GAG AAA CCC AAA TTT CTT CCG GAT CTG TAT GAC TAC AAG GAA AGC CGA TTC ATT GAA ATT GGA GTA ACG AGG AGG GAA GTC CAC ATA TAC TAC CTA GAG AAA GCC AAT AAA ATA AAA TCA GAG AAG ACA CAC ATC CAC ATT TTC TCA TTC ACT GGA GAA GAG ATG GCC ACC AAA GCA GAT TAC ACT CTT GAC GAA GAG AGC AGG GCA AGA ATC AAA ACC AGG CTG TTC ACT ATC AGA CAG GAA ATG GCC AGC AGG GGT CTA TGG GAT TCC TTT CGT CAG TCC GAA AGA GGC GAA GAA ACA ATT GAA GAA AGA TTT GAA ATC ACA GGA ACC ATG CGC AGG CTT GCC GAC CAA AGT CTC CCA CCG AAC TTC TCC AGC CTT GAA AAC TTT AGA GCC TAT GTG GAT GGA TTC GAA CCG AAC GGC TGC ATT GAG GGC AAG CTT TCT CAA ATG TCA AAA GAA GTG AAC GCC AGA ATC GAG CCA TTT CTA AGG ACT ACA CCA CGC CCT CTC AGA TTG CCT AAT GGG CCA CCC TGC TCT CAG CGG TCG AAA TTC TTG CTG ATG GAT GCT CTG AAA TTA AGC ATT GAA GAC CCG AGC CAC GAA GGG GAG GGG ATA CCG CTA TAT GAT GCG ATC AAA TGC ATG AAA ACG TTC TTC GGG TGG AAA GAG CCC ATC ATT ATC AAA CCA CAT GAG AAA GGC ATA AAC CCC AAT TAT CTT ATG ACT TGG AAG CAG GTG CTA GCA GAA CTT CAG GAC ATT GAA AAT GAA GAG AAG ATT CCA AAG ACA AAA AAC ATG AAG AAA ACA GGC CAA TTA AAG TGG GCA CTT GGT GAA AAC ATG GCT CCG GAG AAA GTA GAC TTT GAG GAC TGC AAA GAT GTC AAT GAC CTG AAA CAG TAT GAT AGT GAT GAG CCA GAG CCC AGA TCA CTA GCA TGT TGG ATT CAG AAT GAA TTC AAC AAA GCA TGT GAA TTG ACC GAT TCA AGC TGG GTA GAA CTT GAT GAA ATA GGG GAA GAT GTT GCC CCA ATC GAA CAC ATT GCA AGC ATG AGA CGG AAC TAT TTT ACA GCA GAG GTG TCC CAC TGC AGG GCT ACT GAA TAC ATA ATG AAG GGA GTG TAC ATA AAT ACA GCT TTG CTC AAC GCA TCT TGT GCG GCT ATG GAT GAT TTT CAA CTG ATT CCA ATG ATA AGC AAA TGC AGA ACA AAA GAA GGA AGA CGG AAA ACA AAC CTA TAT GGA TTC ATT ATA AAA GGA AGA TCT CAT TTG AGG AAT GAT ACC GAC GTG GTA AAC TTT GTA AGT ATG GAA TTT TCC CTT ACC GAC CCA AGG TTG GAA CCA CAT AAA TGG GAA AAG TAT TGT GTT CTT GAA ATA GGG GAT ATG CTC CTG CGA ACT GCA GTA GGC CAA GTG TCA AGG CCC ATG TTT CTG TAT GTT AGA ACC AAT GGG ACC TCC AAG ATC AAG ATG AAA TGG GGT ATG GAA ATG AGA CGC TGC CTT CTT CAA TCC CTC CAA CAG ATT GAG AGC ATG ATT GAA GCT GAA TCC TCC GTC AAA GAG AAA GAC CTG ACC AAA GAA TTC TTT GAA AAC AAA TCA GAG ACA TGG CCA ATT GGA GAA TCA CCT AAG GGA GTG GAG GAA GGT TCC ATC GGA AAG GTG TGC AGA ACC TTA CTA GCA AAA TCG GTA TTC AAC AGC CTA TAT GCA TCT CCA CAA CTA GAG GGG TTC TCA GCT GAG TCG AGA AAA TTG CTA CTC ATT GTT CAG GCG CTT AGG GAC AAC CTG GAA CCT GGA ACC TTC GAT CTT GAA GGG CTA TAT GAA GCA ATC GAG GAG TGC CTG ATT AAT GAT CCC TGG GTT TTG CTT AAT GCA TCT TGG TTC AAC TCC TTC CTC ACA CAT GCA CTA AGA 18 | 19 | 20 | 21 | Printing out site pattern counts 22 | 23 | 24 | 15 1317 P 25 | 26 | A AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ACA ACA ACA ACA ACA ACA ACA ACA ACC ACC ACC ACC ACC ACC ACC ACC ACG ACG ACT ACT ACT ACT ACT ACT AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGC AGC AGC AGC AGC AGC AGC AGG AGG AGG AGG AGG AGG AGG AGG AGT AGT AGT AGT AGT ATA ATA ATA ATA ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATG ATG ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT CAA CAA CAA CAA CAA CAA CAC CAC CAC CAC CAC CAC CAG CAG CAG CAG CAG CAG CAT CAT CAT CAT CCA CCA CCA CCA CCA CCC CCC CCC CCC CCC CCC CCC CCG CCG CCG CCG CCG CCG CCG CCT CCT CCT CCT CCT CGA CGA CGA CGA CGA CGC CGC CGC CGG CGG CGT CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTT CTT CTT CTT CTT CTT GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAC GAC GAC GAC GAC GAC GAC GAC GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAT GAT GAT GAT GAT GAT GAT GAT GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCC GCC GCC GCC GCG GCG GCG GCG GCG GCT GCT GCT GCT GGA GGA GGA GGA GGA GGC GGC GGC GGC GGC GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG GGT GGT GGT GTA GTA GTA GTA GTA GTC GTC GTC GTC GTC GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTT GTT GTT TAC TAC TAC TAC TAC TAC TAC TAT TAT TAT TAT TAT TAT TCA TCA TCA TCA TCA TCA TCA TCC TCC TCC TCC TCC TCC TCC TCC TCC TCG TCG TCT TCT TCT TCT TCT TCT TCT TCT TCT TGC TGC TGC TGC TGC TGC TGG TGG TGG TGT TGT TGT TGT TTA TTA TTA TTA TTC TTC TTC TTC TTC TTC TTC TTC TTG TTG TTG TTG TTG TTG TTG TTG TTT TTT TTT TTT TTT TTT TTT 27 | B AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAG AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC GAC AAA AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ACA ACA ACA ACA ACA ACA ACA ACG ACC ACC ACC ACC ACC ACC ACC ACC ACG ACT ACG ACT ACT ACT ACT ACT AAA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGC AGC AGC AGC AGC AGC AGT AGA AGG AGG AGG AGG AGG AGG AGG AGT AGT AGT AGT AGT ATA ATA ATA ATA ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATT ATG ATG ATC ATT ATT ATT ATT ATT ATT ATT ATT ATT CAA CAA CAA CAA CAA CAA CAC CAC CAC CAC CAC CAT CAG CAG CAG CAG CAG CAG CAT CAT CAT CAT CCA CCA CCA CCA CCA CCC CCC CCC CCC CCC CCC CCC CCG CCG CCG CCG CCG CCG CCG CCT CCT CCT CCT CCT CGA CGA CGA CGA CGA CGC CGC CGC CGA CGG CGT CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG TTG CTT CTT CTT CTT CTT CTT GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAG GAC GAC GAC GAC GAC GAC GAC GAT GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAC GAC GAT GAT GAT GAT GAT GAT GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCT GCC GCC GCC GCC GCA GCA GCG GCG GCG GCT GCT GCT GCT GGA GGA GGA GGA GGA GGA GGC GGC GGC GGC GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG GGT GGT GGT GTA GTA GTA GTA GTA GTC GTC GTC GTC GTC GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTT GTT GTT TAC TAC TAC TAC TAC TAC TAC TAT TAT TAT TAT TAT TAT TCA TCA TCA TCA TCA TCA TCA TCC TCC TCC TCC TCC TCC TCC TCC TCC TCG TCG TCT TCT TCT TCT TCT TCT TCT TCT TCT TGC TGC TGC TGC TGT TGT TGG TGG TGG TGT TGT TGT TGT TTA TTA TTA TTA TTC TTC TTC TTC TTC TTC TTC TTT CTG CTG CTG TTG TTG TTG TTG TTG TTC TTT TTT TTT TTT TTT TTT 28 | C AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC GAC AAG AAA AAA AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AGG AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT ACA ACA ACA ACA ACA ACA ACG ACA ACC ACC ACC ACC ACC ACC ACT ACT ACG ACG ACG ACC ACC ACT ACT ACT AAA AGA AGA AGA AGA AGA AGA AGA AGA AGG AGC AGC AGC AGC AGC AGT AGC AGG AAG AGA AGG AGG AGG AGG AGG AGC AGT AGT AGT AGT ATA ATA ATA ATA ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATT ATT ATT ATG ATG ATC ACT ATT ATT ATT ATT ATT ATT ATT ATT CAA CAA CAA CAA CAA CAG CAC CAC CAC CAC CAT CAT CAA CAG CAG CAG CAG CAG CAT CAT CAT CAT CCA CCA CCA CCA CCG CCC CCC CCC CCC CCC CCC CCC CCA CCG CCG CCG CCG CCG CCG CCT CCT CCT CCT CCT CGA CGA CGA CGA CGA CGC CGC CGC CGG CGG CGT CTA CTA CTA CTA CTA CTA CTA CTA CTA CTG CTC CTC CTC CTC CTC CTC CTC CTC CTC CTT CTT ATG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG TTG TTG CTT CTT CTT CTT CTT CTT GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAG GAG GAA GAC GAC GAC GAC GAC GAC GAT GAT GAA GAA GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAC GAT GAC GAT GAT GAT GAT GAT GCA GCA GCA GCA GCA GCA GCA GCA GCA GCG GCA GCC GCC GCC GCT GCA GCG GCA GCG GCG GCT GCT GCT GCT GGA GGA GGA GGA GGA GGC GGC GGC GGC GGC GGA GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG GGT GGT GGT GTA GTA GTA GTA GTA GTC GTC GTC GTC GTC GTA GTA GTG GTG GTG GTG GTG GTG GTT GTT GTC GTT GTT TAC TAC TAC TAC TAC TAC TAC TAC TAT TAT TAT TAT TAT TCA TCA TCA TCA TCA TCA TCA TCA TCC TCC TCC TCC TCC TCC TCC TCC TCG TCG TCT TCT TCT TCT TCT TCT TCT TCT TCT TGC TGC TGC TGC TGC TGC TGG TGG TGG TGT TGT TGT TGT TTA TTA TTA TTA TTC TTC TTC TTC TTC TTC TTC TTC CTG TTG TTG TTG TTG TTG TTG TTG TTT TTT TTT TTT TTT TTT TTT 29 | D AAA AAA AAA AAA AAA AAA AAA AAA AAA AAG AAG AAG AGA AAA AAC AAC AAC AAC AAC AAC AAC AAC AAC AAT AGC GAC AAG AAG AAG AAA AAA AAA AAA AAG AAG AAG AAG AAG AAG AAG AAT AAC AAC AAC AAT AAT AAT AAT AAT AAT AGT GAT ACA ACA ACA ACA ACA ACA ACG ACA ACC ACC ACC ACC ACC ACT ACC ACC ACA ACA ACA ACT ATA ACT ACT GCT AAA AGA AGA AGA AGA AGA AGG AGG AGG AGG AGC AGC AGC AGC AGT AGC AGC AGA AAG AGA AGA AGG AGG AGG CGG AGC AGT AGT AGT AGT ATA ATA ATA GTA ATC ATC ATC ATC ATC ATC ATC ATT ATT ATT ATT ATC ATT ATT ATG ATG ATC ATT ACT ATC ATC ATT ATT ATT ATT ATT CAA CAA CAA CAG CAG CAA CAC CAC CAC CAC CAT CAC CAG CAA CAG CAG CAG CAG CAC CAC CAT CAT CCA CCA CCA CCG CCA CCC CCC CCC CCC CCC CCC CCT CCA CCA CCA CCG CCG CCG CCT CCC CCC CCT CCT CCT CGA CGA CGA CGA CGA CGC CGT CGT AGG CGG CGT CTA CTA CTA CTA CTA CTG CTG CTG CTG CTA CTC CTC CTC CTC CTC CTC CTC CTC CTT CTC CTC TTG ATG CTA CTG CTG CTG CTG CTG CTG CTG CTG CTG TTG CTT CTT CTT CTT CTT CTT GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAG GAG GAG GAG GAG GAG GAG GGA GAG GAG GAG GAC GAC GAC GAT GAT GAT GAC GAT GAG GAT GAA GAA GAA GAA GAA GAA GAG GAG GAG GAG GAG GAG GAG GAC GAT GAT GAT GAT GAT GAT GAT GCA GCA GCA GCA GCA GCA GCA GCA GCC GCG GCG GCC GCC GCC GCT GCA GCG GCA GCG GCG GCC GCT GCT GCT GGA GGA GGA GGG GGG GGC GGC GGC GGC GGT GGA GGA GGA GGC GGG GGG GGG GGG GGG GGG GGG GGC GGT GGT ATA ATA GTA GTA GTG GTC GTC GTC GTC GTC GTG GTG GTA GTA GTG GTG GTG GTG GTA GTG GTT GTT GTT TAC TAC TAC TAC TAT TAT TAT TAC TAC TAT TAT TAT TAT GCG TCA TCA TCA TCA TCA TCA TCC TCC TCC TCC TCC TCC TCC TCT TCT TCG TCG TCC TCC TCG TCT TCT TCT TCT TCT TCT TGC TGC TGC TGC TGC TGC TGG TGG TGG AGC TGC TGT TGT TTA TTA TTG TTG TTC TTC TTC TTC TTC TTC TTC TTC CTG CTG CTG CTG TTG TTG TTG TTG TCT TTA TTC TTC TTC TTT TTT 30 | E AAA AAA AAA AAA AAA AAA AAA AAA AAG AAA AAA AAA AAA AGA AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC GAC AAG AAG AAG AAA AAG AAG AAG AAG AAG AAG AAG AAG AAG AGG AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ACA ACA ACA ACA ACG TCA ACG ACA ACC ACC ACC ACC ACC ACC ACC ACC ACG ACG ACG ACC ACC ACT ACT ACT AAA AGA AGA AGA AGA AGA AGA AGA AGA AGG AGC AGC AGC AGC AGC AGC AGC AGG AAG AGG AGG AGG AGG AGG AGG AGC AGC AGT AGT AGT ATA ATA ATA ATA ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATT ATT ATT ATG ATG ATC ATT ATT ATT ATT ATT ATT ATT ATT ATT CAA CAA CAA CAA CAA CAA CAC CAC CAC CAC CAC CAC CAG CAG CAG CAG CAG CAG CAT CAT CAT CAT CCA CCA CCA CCA CCA CCC CCC CCC CCC CCC CCT CCC CCA CCG CCG CCG CCG CCG CCA CCT CCT CCT CCT CCT CGA CGA CGA CGA CGA CGC CGC CGC CGG CGG CGT CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTC CTC CTC CTC CTC CTC CTC CTC CTC CTT CTT ATG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG TTG CTG CTT CTT CTT CTT CTT CTT GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAG GAA GAA GAA GAA GAA GAA GAA GAA GAG GAG GAA GAC GAC GAC GAC GAC GAT GAT GAT GAA GAA GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAC GAT GAC GAC GAT GAT GAT GAT GCA GCA GCA GCA GCA GCA GCA GCA GCA GCG GCA GCC GCC GCC GCC GCA GCG GCA GCG GCG GCT GCT GCT GCT GGA GGA GGA GGA GGA GGC GGC GGC GGT GGC GGA GGA GGG GGT GGG GGG GGG GGG GGG GGG GGG GGT GGT GGT GTA GTA GTA GTA GTA GTC GTC GTC GTC GTC ATA GTA GTG GTT GTG GTG GTG GTG GTG GTG GTT GTT GTT TAC TAC TAC TAC TAC TAC TAT TAC TAT TAC TAT TAT TAT TCA TCA TCA TCA TCA TCA TCG TCA TCC TCC TCC TCC TCC TCC TCC TCC TCA TCG TCT TCT TCT TCA TCC TCT TCT TCT TCT TGC TGC TGC TGC TGC TGC TGG TGG TGG TGC TGT TGT TGT TTA TTA TTA TTA TTC TTC TTC TTC TTC TTC TTC TTC CTG TTG TTG CTG CTG TTG TTG TTG TTT TTT TTT TTT TTT TTT TTT 31 | F AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAG AAA AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AGA AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ACA ACA ACA ACA ACA ACA ACA ACA ACC ACC ACC ACC ACC ACC ACC ACC ACG ACG ACA ACT ACT ACT ACT ACT AAA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGC AGC AGC AGC AGC AGC AGC AGG AGG AGG AGG AGG AGG AGG AGG AGT AGT AGT AGT AGT ATA ATA ATA ATA ATC ATC ATC ATC ATC ATC ATT ATC ATC ATC ATC ATC ATC ATT ATG ATG ATC ATT ATT ATT ATT ATA ATT ATT ATT ATT CAA CAA CAG CAA CAG CAA CAC CAC CAC CAT CAC CAC CAG CAG CAG CAG CAG CAG CAT CAT CAT CAT CCA CCA CCA CCA CCA CCC CCC CCC CCC CCC CCC CCC CCG CCG CCG CCG CCG CCG CCG CCT CCT CCT CCT CCT CGA CGA CGA CGA CGT CGC CGC CGC CGG CGG CGT CTA CTA CTA CTA CTA CTA CTA CTA CTG CTA ATC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTT CTT CTT CTT CTT CTT GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAG GAA GAA GAA GAA GAC GAC GAC GAC GAC GAC GAC GAC GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAC GAT GAC GAT GAT GAT GAT GAT GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCC GCC GCC GCC GCG GCG GCG GCG GCG GCT GCT GCT GCT GGA GGA GGA GGA GGA GGC GGC GGC GGC GGC GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG GGT GGT GGT GTA GTA GTA GTA GTA GCC GTC GTC GTC GTC GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTT GTT GTT TAC TAC TAC TAT TAC TAC TAC TAT TAT TAT TAT TAT TAT TCA TCA TCA TCA TCA TCA TCA TCC TCC TCC TCC TCC TCT TCT TCC TCC TCG TCG TCT TCT TCT TCT CCT TCT TCT TCT TCT TGC TGC TGC TGT TGC TGC TGG TGG TGG TGT TGT TGT TGT TTA TTA TTA TTA TTC TTC TTC TTC TTC TTC TTT TTT TTG CTG TTG CTG TTG TTG TTG TTG TTT TTT TTT TTT TTT TTT TTT 32 | G AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA --- AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC GAC AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAT CAG AGG AAT AAC AAT AAT --- AAT AAT AAT AAT AAT AAT AAT --- ACA ACA ACA ACA ACA ACG ACA ACC ACC ACC ACC ACC ACT ACC ACC ACG ACA ACG ACT ACT ACT ACT ACT AAA --- AGA AGA AGA AGA AGA AGA AGA AGG AGC AGC AGC AGT AGC AGC AGC AGG AAG AGG AGG AGG AGG AGG AGG AGC AGT AGC AGT AGT ATA ATA ATA ATA ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATT ATC ATT ATT ATG ATT ATC ATT ATT ATT ATT ATT ATT ATT ATT ATT CAA CAA CAA CAA CAA CAA CAC CAC CAT CAC TAC CAC CAG CAG CAG CAG CAG CAG CAT CAT --- CAT CCA CCA CCG CCG CCA CCC CCC CCC CCC CCC CCC CCC CCA CCG CCT CCG CCG CCG CCG CCC CCC CCT CCT CCT CGA CGA CGA CGA CGA CGC CGC CGC AGG CGG CGT CTA CTA CTA CTA CTA --- CTA CTG CTA CTA CTC --- CTC CTC CTC CTC CTC CTC CTC CTC CTT CTG CTG CTT CTG CTG CTG CTG CTG CTG CTG CTG CTG TTG --- CTT CTT CTT CTT CTT GAA GAA GAA GAA GAA GAA GAA GAA GAA GAG GAG GTA GAA GAA GAA GAA GAA GAA GAA GAG GGA CAG GAG GAA GAC GAC GAC GAC GAC GAC GAC GAT GAG GAA GAA GAA GAG GAG GAG GAT GAA GAG GAG GAG GAG GAG GAG GAC GAT GAC GAT GAT GAT GAT GAT --- --- GCA GCA GCA GCA GCA TCA GCA GCG GCG GCC GCC GCC GCC GCA GCG GCG GCG GCG GCT GCT GCT GCT GGA GGA GGA AGA GGA GGC GGC GGC GGC GGC GGA GGG GGG GGA GGA GGA GGC GGG GGG GGG GGG GGC GGT GGT ATA GTA GTA GTA GTA GTC GTC GTC GTC GTC GTG GTA GTG GTG GTG GTG GTG GTG GTG GTG GTT GTT GTT TAC TAC TAC TAC TAC TAC TAC TAC TAC TAT TAT TAT TAT TCA TCA TCA TCA TCA TCG TCA TCC --- TCC TCC TCC TCC TCT TCC TCC TCG TCG TCT TCT TCT TCT TCT --- TCA TCT TCT TGC TGC TGC TGT TGC TGC --- TGG TGG TGT TGT TGT TGT TTA TTA TTA TTA --- TTC TTC TTC TTC TTC TTC TTC CTG TTG CTG TTG TTG --- TTG TTG TTT TTT TTC TTT TTT TTT TTT 33 | H AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC GAC AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AGG AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ACA ACA ACA ACC ACA ACA ACG ACA ACC ACC ACC ACC ACC ATC ACC ACC ACG ACG ACG ACT ACT ACT ACT ACT AAA AGA AGA AGA AGA AGG AGA AGA AGA AGG AGC AGC AGC AGC AGC AGC AGC AGG AAG AGG AGG AGG AGG AGG AGG AGC AGT AGT AGT AGT ATA ATA GTA ATA ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATT ATT ATG ATG ATC ATT ATT ATT ATT ATT ATT ATT ATT ATT CAA CAA CAA CAA CAA CAA CAC CAC CAC CAC CAC CAC CAG CAG CAA CAG CAG CAG CAT CAT CAT CAT CCA CCA CCA CCA CCA CCC CCC CCC CCC CCC CCC CCC CCA CCG CCG CCG CCG CCG CCG CCT CCT CCT CCT CCT CGA CGA CGA CGA CGA CGC CGC CGC CGG CGG CGT CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTT CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG TTG CTT CTT CTT CTT CTT CTT GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAG GAA GAA GAG GAA GAA GAC GAC GAC GAC GAC GAC GAC GAT GAG GAA GAG GAT GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAC GAT GAC GAT GAT GAT GAT GAT GCA GCA GCA GCA GCA GCA GCA GCA GCA GCG GCA GCC GCC GCC GCC GCA GCG GCG GCG GCG GCT GCT GCT GCT GGA GGA GGA GGA GGA GGC GGC GGC GGC GGC GGA GGG GGG GGG GGG GGG GGG GGA GGG GGG GGG GGT GGT GGT GTA GTA GTA GTA GTA GTC GTA GTC GTC GTC GTG GTA GTG GTG GTG GTG GTG GTT GTG GTG GTT GTT GTT TAC TAC TAC TAC TAC TAC TAC TAC TAT TAT TAC TAT TAT TCA TCA TCA TCA TCA TCA TCA TCC TCC TCA TCC TCC TCC TCC TCC TCC TCG TCG TCT TCT TCT TCA TCT TCT TCT TCT TCT TGC TGC TGC TGC TGC TGC TGG TGG TGG TGT TGT TGT TGT TTA TTA TTA TTA TTC TTC TTC TTC TTC TTC TTC TTC CTG TTG TTG TTG TTG TTA TTG TTG TTT TTT TTT TTT TTT TTT TTT 34 | I AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC GAC AAA AAA AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AGG AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ACA ACA ACA ACA ACA ACA ACA ACA ACC ACC ACC ACC ACC ACC ACC ACC ACG ACG ACG ACT ACT ACT ACT ACT AAA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGC AGC AGC AGC AGC AGC AGC AGG AAG AGG AGG AGG AGG AGG AGG AGT AGT AGT AGT AGT ATA ATA ATA ATA ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATT ATG ATG ATC ATT ATT ATT ATT ATT ATT ATT ATT ATT CAA CAA CAA CAA CAA CAA CAC CAC CAC CAC CAT CAC CAG CAG CAG CAG CAG CAG CAC CAT CAT CAT CCA CCA CCA CCA CCA CCC CCC CCC CCC CCC CCC CCC CCG CCG CCG CCG CCG CCG CCG CCT CCT CCT CCT CCT CGA CGA CGA CGA CGA CGC CGC CGC CGG CGG CGT CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG TTG CTT CTT CTT CTT CTT CTT GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAG GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAC GAC GAC GAC GAC GAC GAC GAT GAA GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAC GAT GAC GAT GAT GAT GAT GAT GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCC GCC GCC GCT GCA GCG GCG GCG GCG GCT GCT GCT GCT GGA GGA GGA GGA GGA GGC GGC GGC GGC GGC GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG GGT GGT GGT GTA GTA GTA GTA GTA GTC GTC GTC GTC GTC GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTT GTT GTT TAC TAC TAC TAT TAC TAC TAC TAT TAT TAT TAT TAT TAT TCA TCA TCA TCA TCA TCA TCA TCC TCC TCC TCC TCC TCC TCT TCC TCC TCG TCG TCT TCT TCT TCT TCT TCT TCT TCT TCT TGC TGC TGC TGC TGC TGC TGG TGG TGG TGT TGT TGT TGT TTA TTA TTA TTA TTC TTC TTC TTC TTC TTC TTC TTC CTG CTG TTG CTG TTG TTG TTG TTG TTT TTT TTT TTT TTT TTT TTT 35 | J AAA AAA AAA AAA AAA AAA AAA AAG AAA AAA AAA AAG AAA AAA AAC AAC AAC AAC AAC AAC AAC AAC AAT AAC AGC GAC AAG AAG AAG AAA AAG AAG AAG AAG AAG AAG AAG AAG AAG AGG AAT AAC AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT ACA ACA ACA ACA ACA ACA ACG ACA ACC ACC ACC ACC ACT ACT ACC ACC ACG ACA ACG ACT ACA ACT ACT GCT AAA AGA AGA AGA AGA AGA AGA AGA AGA AGG AGC AGC AGC AGC AGC AGT AGC AGG AAG AGG AGG AGA AGG AGG CGG AGC AGT AGT AGT AGT ATA ATA ATA ATA ATC ATC ATC ATC ATC ATC ATC ATC ATC ATT ATC ATC ATT ATT ATG ATG ATC ATC ATT ATT ATT ATT ATT ATT ATT ATT CAA CAA CAA CAA CAA CAA CAC CAC CAC CAC CAT CAC CAG CAG CAG CAG CAG CAG CAT CAT CAT CAT CCA CCA CCA CCG CCA CCC CCC CCC CCC CCT CCC CCC CCA CCG CCG CCG CCG CCG CCG CCC CCC CCT CCT CCT CGA CGA CGA CGA CGA CGC CGC CGT AGG CGG CGT CTA CTA CTA CTA CTA CTG CTC CTG CTA CTA CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTT CTG TTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG TTG CTT CTT CTT CTT CTT CTT GAA GAA GAA GAA GAA GAA GAA GAG GAG GAA GAA GAA GAA GAA GAA GAG GAG GAG GAA GAG GGG GAG GAG GAA GAC GAC GAC GAC GAT GAC GAC GAT GAG GAA GAA GAG GAA GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAC GAT GAC GAT GAT GAT GAT GAT GCA GCA GCA GCA GCA GCA GCA GCA GCA GCG GCG GCC GCC GCC GCC GCA GCG GCG GCG GCG GCT GCA GCT GCT GGA GGA GGA AGA GGA GGC GGC GGC GGC GGC GGA GGG GGG GGA GGG GGG GGG GGG GGG GGG GGG GGC GGT GGT ATA GTA GTA GTA GTA GTC GTC GTC GTC GTC GTG GTG GTG GTG GTG GTG GTG GTG GTA GTG GTT GTT GTT TAC TAC TAC TAC TAC TAC TAT TAC TAT TAT TAT TAT TAT GCA TCA TCA TCA TCA TCA TCA TCC TCC TCC TCC TCC TCC TCC TCC TCT TCG TCG TCT TCT TCT TCT TCT TCT TCT TCT TCT TGC TGC TGC TGC TGC TGC TGG TGG TGG TGT TGT TGT TGT TTA TTA TTA TTG TTC TTC TTC TTC TTC TTC TTC TTC CTG TTG TTG TTA TTG TTG TTG TTG TTT TTT TTC TTC TTT TTT TTT 36 | K AAA AAA AAA AAG AAG AAG AGA AAA AAA AAA AAA AAG AAA AAG AAC AAC AAC AAC AAC AAC AAT AAT AAC AAT AGC GAC AAG AAA AAG AAA AAA AAG AAG AAA AAG AAG AAG AAG AAA AAG AAT AAC AAC AAT AAT AAC AAC AAT AAT AAT AGT GAT ACA ACA ACA ACA ACA ACA ACA ACA ACA ACC ACC ACC ACC ACT ACC ACT ACG ACA ACA ACA ATA ACC ACT GCT AAA AAA AGA AGA AGG AGG AGA AGA AGA AGG AGC AGC AGT AGC AGT AGC AGT AGG AAA AGG AGA AGG AGG AGG CGA AGC AGC AGT AGC AGT ATA ATA ATA GTA ATA ATC ATC ATT ATT GTA ATT ATC ATT ATT ATT GTC ATT ATC ATG ATG ATT ATC ATT ATC ATT ATT ATA ATC ATT ATT CAA CAA CAA CAG CAA CAA CAC CAT CAC CAC CAT CAC CAG CAA CAG CAA CAG CAG CAT CAC CAT CAT CCA CCT CCG CCG CCG CCC CCC CCT TCT CCC CCC CCC CCA CCA CCG CCG CCG CCG CCT CCC CCT CCT CCT CCT CGA CGA CGA CGG CGA CGA CGC CGC AGG CGG CGT CTA CTA CTG CTT TTA TTG CTG CTG CTG CTA CTC CTC CTC CTC CTC CTC CTC CTT CTT TTG CTA CTG ATG CTG CTA CTA CTG CTG CTG CTG CTT TTG TTG CTG CTT CTC CTC CTT CTT CTT GAA GAA GAA GAA GAA GAG GAG GAA GAG GAA GAA GAA GAG GAA GAG GAA GAA GAG GAA GAA GGG GAT GAG GAA GAC GAT GAT GAT GAT GAT GAC GAT GAG GAG GAA GAG GAA GAA GAA GAG GAA GAA GAA GAA GAG GAG GAG GAT GAC GAT GAC GAC GAC GAT GAT GCA GCG GCA GCA GCA GCA GCG GCC GCG GCA GCG GCC GCC GCC GCT GCA GCA GCA GCA GCG GCT GCT GCC GCC GGA GGA GGA GGA GGA GGC GGC GGT GGC GGC GGG GGG GGG GGC GGG GGT GGG GGA GGG GGG GGG GGC GGC GGT ATT ATA GTA GTG GTG GTC GTC ATT GTC GTT GTG GTG GTG GTG GTG GTG GTG GTA GTG GTG GTT ATT GTT TAC TAT TAT TAC TAC TAT TAT TAC TAC TAT TAC TAT TAT GCA TCA TCA TCC TCG TCA TCA TCA TCC TCT TCC TCC TCC TCC TCT TCC TCA TCA TCC TCC TCG TCC TCT TCT TCT TCT TCT TGC TGC TGT TGC TGC TGC TGG TGG TGG AGC TGC TGC TGT TTA TTG TTA TTG TTC TTC TTC TTT TTT TTT TTC TTC CTA TTG CTA TTA CTG TTG TTG TTG TTC TTC TTC TTC TTT TTC TTT 37 | L --- AAA AAA --- AAA AAA AAA AAA AAA AAA AAA AAG AAA AAA --- --- AAC AAC AAC AAC AAC AAC AAT AAT AGC GAC AAG AAG AAG AAA AAG AAA AAG AAG --- AAG AAG AAG AAG AGG AAT --- AAC AAT --- --- AAT AAT AAT AAT AAT AAT --- ACA ACA ACA ACA ACA ACG ACA --- ACC ACC ACC --- ACT ACC ACC ACG ACA ACG ACT ACA ACT ACT GCT AAA --- --- AGA AGA AGA --- AGA AGA AGG AGC AGC AGC AGC AGC --- AGC AGG AAG AGG AGA AGG --- AGG CGG AGC AGT AGT AGT AGT ATA ATA ATA ATA ATC ATC ATC ATC ATC ATC ATT ATC --- ATT ATC ATC ATT ATT ATG ATG --- ATC ATT ATT ATT ATT ATT ATT --- ATT --- CAA CAA CAA CAA CAA CAC CAC CAC CAC CAT CAC CAG CAG CAA CAG --- CAG CAT CAT --- CAT CCA CCA CCA CCG CCA --- CCC CCC CCC CCC CCC CCC --- CCA CCG CCG CCG CCG CCG CCC CCC --- CCT CCT CGA CGA CGA CGA CGA CGC CGC CGT AGG CGG CGT --- CTA CTA --- --- --- CTA CTG CTA --- CTC --- --- --- CTC CTC CTC CTC CTC CTC CTT CTG TTG CTG CTG CTG --- --- CTG CTT CTG CTG --- TTG --- CTT CTT --- CTT CTT --- --- GAA GAA GAA GAA GAA GAA GAG GAA GAA GAA GAA GAA GAA GAG GAG GAG GAA GAG --- GAG GAG GAA GAC GAC GAC GAT GAT GAC GAC GAT GAG GAA GAA GAG GAA GAA GAG GAG GAG --- GAG GAG --- GAG GAG GAC --- GAC GAT GAT GAT --- GAT --- --- --- GCA GCA GCA GCA GCA GCA GCG GCG GCC GCC GCC GCC GCA --- GCG GCG GCG GCT --- GCT GCT --- GGA GGA GGA GGA GGC GGC GGC GGC GGC --- GGG GGG GGA GGG GGG GGG GGG --- --- GGG --- GGT GGT ATA GTA GTA --- GTG GTC GTC GTC GTC GTC GTG GTG GTG GTG --- GTG GTG GTG GTA GT- GTT GTT --- TAC TAC TAC TAC TAC TAC TAT TAC TAC --- TAT --- TAT GCA --- TCA TCA TCA TCA TCA TCC --- TCC --- TCC TCC TCC TCC TCT --- TCG TCT TCT TCG TCT TCT --- --- --- TCT --- TGC TGC TGC --- TGC --- --- TGG TGT TGT TGT TGT TTA --- TTA TTG --- --- TTC --- TTC TTC TTC --- CTG TTG TTG TTA CTG --- TTG TTG TTT TTT TTC TTC TTT TTT TTT 38 | M AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAG AAA AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AGA AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ACA ACA ACA ACA ACA ACA ACA ACA ACC ACC ACC ACC ACC ACC ACC ACC ACG ACG ACA ACT ACT ACT ACT ACT AAA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGC AGC AGC AGC AGC AGC AGC AGG AGG AGG AGG AGG AGG AGG AGG AGT AGT AGT AGT AGT ATA ATA ATA ATA ATC ATC ATC ATC ATC ATC ATT ATC ATC ATC ATC ATC ATC ATT ATG ATG ATC ATT ATT ATT ATT ATA ATT ATT ATT ATT CAA CAA CAG CAA CAA CAA CAC CAC CAC CAT CAC CAC CAG CAG CAG CAG CAG CAG CAT CAT CAT CAT CCA CCA CCA CCA CCA CCC CCT CCC CCC CCC CCC CCC CCG CCG CCG CCA CCG CCG CCG CCT CCT CCT CCT CCT CGA CGA CGT CGA CGT CGC CGC CGC CGG CGG CGT CTA CTA CTA CTA CTA CTA CTA CTA CTG CTA CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTT CTT CTT CTT CTT CTT GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAG GAA GAA GAA GAA GAC GAC GAC GAC GAC GAC GAC GAC GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAC GAT GAT GAT GAT GAT GAT GAT GCA GCA GCA ACA GCA GCA GCA GCA GCA GCA GCA GCC GCC GCC GCC GCG GCG GCG GCG GCG GCT GCT GCT GCT GGA GGA GGA GGA GGA GGC GGC GGC GGC GGC GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG GGT GGT GGT GTA GTA GTA GTA GTA GCC GTC GTC GTC GTC GTG GTG GTG GTG GTG GTA GTG GTG GTG GTG GTT GTT GTT TAC TAC TAC TAT TAC TAC TAC TAT TAT TAT TAT TAT TAT TCA TCA TCA TCA TCA TCA TCA TCC TCC TCT TCC TCC TCC TCT TCC TCC TCG TCG TCT TCT TCT TCT TCT TCT TCT TCT TCT TGC TGC TGC TGT TGC TGC TGG TGG TGG TGT TGT TGT TGT TTA TTA TTA TTA TTC TTC TTC TTC TTC TTC TTT TTT TTG CTG TTG CTG TTG TTG TTG TTG TTT TTT TTT TTT TTT TTT TTT 39 | N AAA AAA AAG AAA AAA AAG AGA AAA AAA AAA AAG AAG AAA AAA AAC AAC AAC AAC AAC AAC AAC AAT AAC AAT AGC GAC AAG AAA AAA AAA AAA AAG AAG AAG AAG AAG AAG AAG AAA AAG AAT AAC AAC AAT AAT AAC AAC AAC AAT AAT AGC GAT ACA ACA ACA ACA ACA ACA ACG ACA ACA ACC ACC ACC ACC ACT ACT ACT ACA ACA ACA ACA ATA ACT ACT GCT AAA AAA AGA AGA AGG AGA AGA AGA AGG AGG AGC AGC AGT AGC AGC AGC AGT AGG AAA AGA AGG AGG AGG AGG CGA AGC AGT AGT AGC AGT ATA ATA ATA GTA ATC ATC ATT ATC ATT GTA ATT ATC ATT ATT ATT ATC ATT ATC ATG ATG ATT ATC ATT ATT ATT ATT ATA ATC ATT ATT CAA CAA CAA CAA CAA CAA CAC CAT CAC CAC CAT CAC CAG CAA CAG CAA CAG CAG CAT TAC CAT CAT CCA CCA CCA CCG CCG CCC CCC CCT TCT CCC CCC CCC CCA CCA CCG CCG CCA CCG CCA CCC CCT CCT CCT CCT CGA CGA CGG CGG CGA CGA CGC CGC AGA CGG CGT CTA CTA CTA CTT CTA CTG CTG CTG CTG CTA CTA CTC CTC CTC CTC CTC CTT CTT CTT TTG CTC CTG ATG CTG CTA CTG CTG CTT CTG CTG CTC TTG TTG TTG CTT CTC CTT CTT CTC CTT GAA GAA GAA GAA GAG GAA GAG GAA GAG GAA GAG GAA GAG GAA GAG GAA GAG GAG GAA GAA GGG GAC GAG GAA GAC GAC GAT GAT GAT GAT GAC GAT GAG GAG GAG GAG GAA GAA GAG GAG GAA GAG GAA GAA GAG GAA GAG GAC GAC GAT GAC GAC GAT GAT GAT GCA GCG GCA GCA GCA GCA GCG GCC GCA GCA GCG GCC GCC GCT GCT GCA GCA GCA GCA GCG GCT GCT GCC GCT GGG GGA GGG GGG GGG GGC GGC GGC GGC GGC GGG GGA GGG GGC GGG GGT GGG GGA GGA GGG GGG GGC GGC GGT ATT ATA GTA GTG GTG GTC GTC GTT GTC GTT GTA GTG GTA GTG GTG GTG GTG GTA GTG GTG GTC GTT GTT TAT TAC TAT TAC TAC TAT TAT TAC TAC TAT TAC TAT TAT GCA TCA TCA TCC TCG TCA TCA TCG TCC TCT TCC TCC TCC TCC TCT TCT TCA TCG TCC TCC TCG TCC TCT TCT TCT TCT TCT TGC TGC TGT TGC TGC TGC TGG TGG TGG AGC TGC TGT TGT TTG TTA TTA TTA TTC TTC TTC TTT TTC TTT TTC TTT CTA TTG CTG TTA CTG TTG TTA TTG TTC TTC TTC TTC TTT TTC TTT 40 | O AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAA AAC AAC AAC AGC ATC CAC AAC AAC AAC AAC AAT GAT AAG AAG AAG AAA AAG AAG AAG AAG AAG AAA AAG AAG AAG AGG AAT AAC AAT AAT AAT AAT AAT AAT AAC AAT AAT AAT ACA ACA ACT ACA ACA ACA ACA ACA ACC ACA ACC ACT ACC ACC ACC ACC ACG ACG ACG ACC ACC ACT ACT ACT AAA AGA AGA AGA AGA AGA AGA AGA AGA AGG AGC GGC AGC AGC AGC AGC AGC AGG AAG AGG AGA AGG AGG AGG AGG AGC AGC AGT AGT AGT ATA ATC ATA ATA ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATT ATT ATT ATG ATG ATC ATT ATT ATT ATT ATT ATT ATT ATT ATT CAA CAA CAA CAA CAA CAA CAC CAC CAC CAC CAC CAC CAG CAG CAG CAG CAG CAG CAT CAT CAT CAT CCA CCA CCA CCA CCA CCC CCC CCC CCC CCC CCC CCC CCA CCG CCG CCG CCG CCG CCG CCT CCT CCT CCA CCT AGA CGA AGA CGA CGA CGC CGC CGC CGG CGG CGT CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTC CTC CTA CTC CTC CTT CTC CTT CTC CTC CTT ATG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG TTG TTG CTT CTT CTT CTT CTT CTT GAA GAG GAA GAG GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAG GAG GAA GAC GAC GAC GAC GAC GAC GAT GAT GAA GAG GAG GAG GAG GAG GAG GAG GAG GAG GAA GAG GAG GAG GAG GAT GAC GAC GAC GAT GAT GAT GAT GCA GCA GCA GCA GCA GCT GCA GCA GCA GCG GCA GCC GCT GCC GCC GCA GCG GCA GCG GCG GCT GCT GCT GCT GGA GGA GGA GGA GGA GGC GGC GGC GGC GGC GGA GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG GGT GGT GGT GTA GTA GTA GTA GTA GTC GTC GTC GTC GTC GTA GTA GTG GTT GTG GTG GTG GTG GTG GTG GTT GTT GTT TAC TAC TAC TAC TAC TAC TAT TAC TAT TAT TAT TAT TAT TCA TCA TCA TCA TCA TCA TCA TCA TCC TCC TCC TCC TCC TCC TCC TCC TCG TCG TCC TCT TCT TCT TCT TCT TCT TCG TCT TGC TGC TGC TGC TGC TGC TGG TGG TGG TGT TGT TGT TGT TTA TTA TTA TTA TTC TTC TTC TTC TTC TTC TTC TTC CTG TTG TTG CTG TTG TTG TTG TTG TTT TTT TTT TTT TTT TTT TTT 41 | 42 | 43 | 44 | 1 15 1 1 1 6 1 1 1 1 1 1 1 1 1 45 | 1 8 1 1 1 2 1 1 1 1 1 1 1 1 1 46 | 1 1 1 1 1 2 4 1 1 1 1 1 1 1 1 47 | 1 1 1 1 4 1 1 1 9 1 1 1 1 1 1 48 | 1 1 6 1 1 1 1 1 1 1 1 1 1 1 3 49 | 1 1 1 1 10 1 1 1 1 1 1 3 1 2 1 50 | 1 1 1 1 1 1 1 1 1 5 1 1 1 1 1 51 | 1 11 1 1 1 1 2 1 1 2 1 1 1 1 1 52 | 1 1 1 1 23 1 1 1 1 1 1 1 1 1 2 53 | 8 1 3 2 1 1 1 4 1 1 1 1 1 1 1 54 | 1 2 1 3 1 1 1 1 9 1 1 1 1 1 1 55 | 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 56 | 1 1 1 2 1 1 1 1 1 1 1 2 1 1 3 57 | 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 58 | 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 59 | 1 1 1 1 1 2 1 8 3 1 24 1 1 1 6 60 | 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 61 | 1 1 7 1 1 1 1 1 1 1 1 1 1 1 2 62 | 1 1 1 1 1 1 2 3 1 5 1 1 1 1 3 63 | 1 2 11 1 1 3 1 6 1 1 1 1 1 1 6 64 | 1 1 1 1 1 1 1 1 1 1 2 1 1 7 2 65 | 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 66 | 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 67 | 1 1 1 1 1 1 1 6 1 1 1 1 1 2 1 68 | 1 1 1 1 1 1 1 1 1 1 1 7 1 1 3 69 | 1 2 1 1 1 1 1 1 3 1 1 1 1 1 1 70 | 1 1 1 1 1 1 1 1 2 1 7 1 1 1 2 71 | 1 1 10 1 1 1 1 1 1 1 1 2 1 11 1 72 | 2 3 1 1 1 1 1 1 1 1 1 2 1 1 1 73 | 1 2 1 7 74 | 75 | CODONML (in paml version 4.7b, October 2013) sample.phy 76 | Model: free dN/dS Ratios for branches for branches, 77 | Codon frequency model: F3x4 78 | ns = 15 ls = 716 79 | 80 | Codon usage in sequences 81 | -------------------------------------------------------------------------------------------------------------------------------------- 82 | Phe TTT 14 14 14 8 14 16 | Ser TCT 10 10 10 10 8 11 | Tyr TAT 12 12 11 13 11 13 | Cys TGT 4 7 4 2 3 5 83 | TTC 22 22 22 26 22 20 | TCC 11 11 10 11 11 9 | TAC 7 7 8 6 8 6 | TGC 13 10 13 14 14 12 84 | Leu TTA 4 4 4 3 4 4 | TCA 10 10 11 9 13 10 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0 85 | TTG 9 7 10 9 7 7 | TCG 2 2 2 3 2 2 | TAG 0 0 0 0 0 0 | Trp TGG 12 12 12 12 12 12 86 | -------------------------------------------------------------------------------------------------------------------------------------- 87 | Leu CTT 14 14 16 15 16 14 | Pro CCT 5 5 5 5 6 6 | His CAT 4 5 6 3 4 5 | Arg CGT 1 1 1 3 1 2 88 | CTC 11 11 9 10 9 10 | CCC 7 7 7 8 6 7 | CAC 9 8 7 10 9 8 | CGC 3 3 3 1 3 3 89 | CTA 12 12 11 9 12 11 | CCA 13 13 13 15 15 13 | Gln CAA 9 9 9 8 9 6 | CGA 6 7 6 6 6 5 90 | CTG 13 15 12 17 14 16 | CCG 8 8 8 5 6 8 | CAG 9 9 9 10 9 12 | CGG 3 2 3 3 3 3 91 | -------------------------------------------------------------------------------------------------------------------------------------- 92 | Ile ATT 18 18 19 20 20 18 | Thr ACT 8 8 8 7 5 7 | Asn AAT 15 14 13 11 14 14 | Ser AGT 5 6 6 6 3 5 93 | ATC 16 16 14 13 14 16 | ACC 13 13 13 12 15 13 | AAC 20 20 20 20 20 21 | AGC 10 9 10 12 12 10 94 | ATA 14 14 14 16 15 15 | ACA 16 15 15 18 13 17 | Lys AAA 33 34 36 34 33 35 | Arg AGA 19 19 18 18 18 19 95 | Met ATG 24 24 25 25 25 24 | ACG 2 3 4 1 5 2 | AAG 18 18 16 18 18 16 | AGG 12 11 12 12 13 12 96 | -------------------------------------------------------------------------------------------------------------------------------------- 97 | Val GTT 4 4 5 4 5 4 | Ala GCT 5 6 6 6 5 5 | Asp GAT 21 20 21 26 21 19 | Gly GGT 4 4 4 4 6 4 98 | GTC 6 6 7 6 6 5 | GCC 9 9 8 10 9 10 | GAC 14 16 15 12 15 16 | GGC 7 6 7 8 6 7 99 | GTA 5 5 7 6 6 5 | GCA 18 19 19 17 19 18 | Glu GAA 56 55 56 51 55 55 | GGA 12 13 13 14 14 12 100 | GTG 15 15 11 13 12 15 | GCG 5 3 4 6 4 5 | GAG 23 24 23 26 24 24 | GGG 12 12 11 10 9 12 101 | -------------------------------------------------------------------------------------------------------------------------------------- 102 | 103 | -------------------------------------------------------------------------------------------------------------------------------------- 104 | Phe TTT 13 14 14 12 15 12 | Ser TCT 9 9 11 11 9 7 | Tyr TAT 10 10 13 12 13 9 | Cys TGT 5 4 4 4 2 4 105 | TTC 21 22 22 24 21 19 | TCC 9 10 10 10 12 8 | TAC 10 9 6 7 6 8 | TGC 12 13 13 13 14 11 106 | Leu TTA 4 5 4 4 4 3 | TCA 11 12 10 9 9 8 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0 107 | TTG 7 8 7 10 11 8 | TCG 3 2 2 2 3 2 | TAG 0 0 0 0 0 0 | Trp TGG 11 12 12 12 12 10 108 | -------------------------------------------------------------------------------------------------------------------------------------- 109 | Leu CTT 15 15 14 15 16 13 | Pro CCT 4 5 5 4 7 2 | His CAT 4 4 4 5 5 4 | Arg CGT 1 1 1 2 1 2 110 | CTC 9 10 11 11 9 7 | CCC 9 7 7 8 6 8 | CAC 7 9 9 8 8 8 | CGC 3 3 3 2 2 2 111 | CTA 10 12 12 9 10 6 | CCA 12 14 13 13 11 13 | Gln CAA 9 10 9 9 11 9 | CGA 6 6 6 6 7 6 112 | CTG 14 13 15 14 12 10 | CCG 8 7 8 8 8 7 | CAG 11 8 9 9 7 7 | CGG 2 3 3 3 3 3 113 | -------------------------------------------------------------------------------------------------------------------------------------- 114 | Ile ATT 21 19 18 19 25 18 | Thr ACT 8 7 7 7 5 6 | Asn AAT 14 14 14 14 13 13 | Ser AGT 4 4 5 5 7 4 115 | ATC 14 16 16 15 8 12 | ACC 12 13 13 11 11 10 | AAC 19 20 20 19 18 15 | AGC 11 11 10 11 11 11 116 | ATA 15 13 14 15 17 15 | ACA 15 14 16 17 20 16 | Lys AAA 34 34 36 33 30 33 | Arg AGA 17 16 18 19 16 15 117 | Met ATG 23 24 24 24 25 24 | ACG 3 4 3 3 1 3 | AAG 16 18 16 19 23 16 | AGG 14 14 12 12 13 11 118 | -------------------------------------------------------------------------------------------------------------------------------------- 119 | Val GTT 4 5 4 4 4 2 | Ala GCT 5 5 6 5 4 5 | Asp GAT 21 21 20 21 23 19 | Gly GGT 3 4 4 3 4 3 120 | GTC 6 5 6 6 5 6 | GCC 9 9 8 9 12 9 | GAC 16 16 16 15 15 14 | GGC 9 7 7 8 9 7 121 | GTA 6 8 5 5 4 3 | GCA 14 18 19 19 18 13 | Glu GAA 52 55 56 51 52 49 | GGA 16 14 12 13 13 12 122 | GTG 14 13 15 14 16 13 | GCG 6 5 4 6 5 5 | GAG 23 23 23 27 25 21 | GGG 7 10 12 11 10 8 123 | -------------------------------------------------------------------------------------------------------------------------------------- 124 | 125 | -------------------------------------------------------------------------------------- 126 | Phe TTT 16 14 14 | Ser TCT 12 10 8 | Tyr TAT 13 13 12 | Cys TGT 5 3 4 127 | TTC 20 22 22 | TCC 9 11 11 | TAC 6 7 7 | TGC 12 13 13 128 | Leu TTA 4 5 4 | TCA 10 7 11 | *** TAA 0 0 0 | *** TGA 0 0 0 129 | TTG 7 9 9 | TCG 2 5 3 | TAG 0 0 0 | Trp TGG 12 12 12 130 | -------------------------------------------------------------------------------------- 131 | Leu CTT 14 17 17 | Pro CCT 6 5 4 | His CAT 5 5 4 | Arg CGT 3 1 1 132 | CTC 11 9 7 | CCC 6 6 7 | CAC 8 7 10 | CGC 3 2 3 133 | CTA 11 10 13 | CCA 14 15 15 | Gln CAA 7 12 9 | CGA 4 6 4 134 | CTG 16 12 12 | CCG 7 6 7 | CAG 11 6 9 | CGG 3 4 3 135 | -------------------------------------------------------------------------------------- 136 | Ile ATT 18 24 20 | Thr ACT 7 7 7 | Asn AAT 14 10 14 | Ser AGT 5 6 3 137 | ATC 15 9 16 | ACC 13 9 13 | AAC 21 21 17 | AGC 10 12 12 138 | ATA 15 16 13 | ACA 18 20 16 | Lys AAA 35 31 37 | Arg AGA 19 17 20 139 | Met ATG 24 25 25 | ACG 2 1 3 | AAG 16 22 15 | AGG 12 12 12 140 | -------------------------------------------------------------------------------------- 141 | Val GTT 4 5 5 | Ala GCT 5 6 7 | Asp GAT 20 21 21 | Gly GGT 4 3 4 142 | GTC 5 5 6 | GCC 10 10 8 | GAC 15 17 15 | GGC 7 10 8 143 | GTA 6 6 7 | GCA 17 19 18 | Glu GAA 55 48 54 | GGA 12 10 13 144 | GTG 14 14 12 | GCG 5 4 4 | GAG 24 29 25 | GGG 12 13 11 145 | -------------------------------------------------------------------------------------- 146 | 147 | Codon position x base (3x4) table for each sequence. 148 | 149 | #1: A 150 | position 1: T:0.18156 C:0.17737 A:0.33939 G:0.30168 151 | position 2: T:0.28073 C:0.19832 A:0.34916 G:0.17179 152 | position 3: T:0.20112 C:0.24860 A:0.31704 G:0.23324 153 | Average T:0.22114 C:0.20810 A:0.33520 G:0.23557 154 | 155 | #2: B 156 | position 1: T:0.17877 C:0.18017 A:0.33799 G:0.30307 157 | position 2: T:0.28073 C:0.19832 A:0.35056 G:0.17039 158 | position 3: T:0.20670 C:0.24302 A:0.31983 G:0.23045 159 | Average T:0.22207 C:0.20717 A:0.33613 G:0.23464 160 | 161 | #3: C 162 | position 1: T:0.18296 C:0.17458 A:0.33939 G:0.30307 163 | position 2: T:0.27933 C:0.19972 A:0.34916 G:0.17179 164 | position 3: T:0.20810 C:0.24162 A:0.32402 G:0.22626 165 | Average T:0.22346 C:0.20531 A:0.33752 G:0.23371 166 | 167 | #4: D 168 | position 1: T:0.17598 C:0.17877 A:0.33939 G:0.30587 169 | position 2: T:0.27933 C:0.19972 A:0.34637 G:0.17458 170 | position 3: T:0.19972 C:0.25000 A:0.31285 G:0.23743 171 | Average T:0.21834 C:0.20950 A:0.33287 G:0.23929 172 | 173 | #5: E 174 | position 1: T:0.18017 C:0.17877 A:0.33939 G:0.30168 175 | position 2: T:0.28073 C:0.19832 A:0.34916 G:0.17179 176 | position 3: T:0.19832 C:0.25000 A:0.32402 G:0.22765 177 | Average T:0.21974 C:0.20903 A:0.33752 G:0.23371 178 | 179 | #6: F 180 | position 1: T:0.17737 C:0.18017 A:0.34078 G:0.30168 181 | position 2: T:0.27933 C:0.19972 A:0.34916 G:0.17179 182 | position 3: T:0.20670 C:0.24162 A:0.31425 G:0.23743 183 | Average T:0.22114 C:0.20717 A:0.33473 G:0.23696 184 | 185 | #7: G 186 | position 1: T:0.17857 C:0.17714 A:0.34286 G:0.30143 187 | position 2: T:0.28000 C:0.19571 A:0.35143 G:0.17286 188 | position 3: T:0.20143 C:0.25143 A:0.31571 G:0.23143 189 | Average T:0.22000 C:0.20810 A:0.33667 G:0.23524 190 | 191 | #8: H 192 | position 1: T:0.18156 C:0.17737 A:0.33659 G:0.30447 193 | position 2: T:0.28212 C:0.19693 A:0.35056 G:0.17039 194 | position 3: T:0.19693 C:0.25140 A:0.32263 G:0.22905 195 | Average T:0.22020 C:0.20857 A:0.33659 G:0.23464 196 | 197 | #9: I 198 | position 1: T:0.17877 C:0.18017 A:0.33799 G:0.30307 199 | position 2: T:0.28073 C:0.19832 A:0.35056 G:0.17039 200 | position 3: T:0.20112 C:0.24721 A:0.32123 G:0.23045 201 | Average T:0.22020 C:0.20857 A:0.33659 G:0.23464 202 | 203 | #10: J 204 | position 1: T:0.18156 C:0.17598 A:0.33939 G:0.30307 205 | position 2: T:0.28073 C:0.19832 A:0.34777 G:0.17318 206 | position 3: T:0.19972 C:0.24721 A:0.31006 G:0.24302 207 | Average T:0.22067 C:0.20717 A:0.33240 G:0.23976 208 | 209 | #11: K 210 | position 1: T:0.18296 C:0.17179 A:0.33939 G:0.30587 211 | position 2: T:0.28212 C:0.19693 A:0.34777 G:0.17318 212 | position 3: T:0.21369 C:0.23324 A:0.31006 G:0.24302 213 | Average T:0.22626 C:0.20065 A:0.33240 G:0.24069 214 | 215 | #12: L 216 | position 1: T:0.17384 C:0.17065 A:0.35407 G:0.30144 217 | position 2: T:0.27273 C:0.19458 A:0.35885 G:0.17384 218 | position 3: T:0.19617 C:0.24721 A:0.32057 G:0.23604 219 | Average T:0.21425 C:0.20415 A:0.34450 G:0.23711 220 | 221 | #13: M 222 | position 1: T:0.17877 C:0.18017 A:0.34078 G:0.30028 223 | position 2: T:0.27933 C:0.19972 A:0.34916 G:0.17179 224 | position 3: T:0.21089 C:0.23883 A:0.31704 G:0.23324 225 | Average T:0.22300 C:0.20624 A:0.33566 G:0.23510 226 | 227 | #14: N 228 | position 1: T:0.18296 C:0.17179 A:0.33799 G:0.30726 229 | position 2: T:0.28212 C:0.19693 A:0.34777 G:0.17318 230 | position 3: T:0.20950 C:0.23743 A:0.31006 G:0.24302 231 | Average T:0.22486 C:0.20205 A:0.33194 G:0.24115 232 | 233 | #15: O 234 | position 1: T:0.18156 C:0.17458 A:0.33939 G:0.30447 235 | position 2: T:0.28212 C:0.19832 A:0.34777 G:0.17179 236 | position 3: T:0.20251 C:0.24441 A:0.32682 G:0.22626 237 | Average T:0.22207 C:0.20577 A:0.33799 G:0.23417 238 | 239 | Sums of codon usage counts 240 | ------------------------------------------------------------------------------ 241 | Phe F TTT 204 | Ser S TCT 145 | Tyr Y TAT 177 | Cys C TGT 60 242 | TTC 327 | TCC 153 | TAC 108 | TGC 190 243 | Leu L TTA 60 | TCA 150 | *** * TAA 0 | *** * TGA 0 244 | TTG 125 | TCG 37 | TAG 0 | Trp W TGG 177 245 | ------------------------------------------------------------------------------ 246 | Leu L CTT 225 | Pro P CCT 74 | His H CAT 67 | Arg R CGT 22 247 | CTC 144 | CCC 106 | CAC 125 | CGC 39 248 | CTA 160 | CCA 202 | Gln Q CAA 135 | CGA 87 249 | CTG 205 | CCG 109 | CAG 135 | CGG 44 250 | ------------------------------------------------------------------------------ 251 | Ile I ATT 295 | Thr T ACT 104 | Asn N AAT 201 | Ser S AGT 74 252 | ATC 210 | ACC 184 | AAC 291 | AGC 162 253 | ATA 221 | ACA 246 | Lys K AAA 508 | Arg R AGA 268 254 | Met M ATG 365 | ACG 40 | AAG 265 | AGG 184 255 | ------------------------------------------------------------------------------ 256 | Val V GTT 63 | Ala A GCT 81 | Asp D GAT 315 | Gly G GGT 58 257 | GTC 86 | GCC 139 | GAC 227 | GGC 113 258 | GTA 84 | GCA 265 | Glu E GAA 800 | GGA 193 259 | GTG 206 | GCG 71 | GAG 364 | GGG 160 260 | ------------------------------------------------------------------------------ 261 | 262 | (Ambiguity data are not used in the counts.) 263 | 264 | 265 | Codon position x base (3x4) table, overall 266 | 267 | position 1: T:0.17988 C:0.17668 A:0.34020 G:0.30324 268 | position 2: T:0.28021 C:0.19803 A:0.34960 G:0.17217 269 | position 3: T:0.20357 C:0.24485 A:0.31772 G:0.23385 270 | Average T:0.22122 C:0.20652 A:0.33584 G:0.23642 271 | 272 | Codon frequencies under model, for use in evolver (TTT TTC TTA TTG ... GGG): 273 | 0.01074034 0.01291817 0.01676286 0.01233774 274 | 0.00758777 0.00912635 0.01184253 0.00871630 275 | 0.01339569 0.01611196 0.00000000 0.00000000 276 | 0.00659697 0.00793464 0.00000000 0.00757813 277 | 0.01054945 0.01268857 0.01646493 0.01211846 278 | 0.00745291 0.00896415 0.01163205 0.00856138 279 | 0.01315761 0.01582560 0.02053560 0.01511454 280 | 0.00647972 0.00779362 0.01011315 0.00744344 281 | 0.02031288 0.02443175 0.03170310 0.02333401 282 | 0.01435053 0.01726040 0.02239743 0.01648488 283 | 0.02533488 0.03047207 0.03954114 0.02910293 284 | 0.01247664 0.01500655 0.01947279 0.01433229 285 | 0.01811203 0.02178464 0.02826816 0.02080583 286 | 0.01279569 0.01539029 0.01997073 0.01469879 287 | 0.02258992 0.02717051 0.03525697 0.02594971 288 | 0.01112484 0.01338063 0.01736297 0.01277943 289 | 290 | 291 | 292 | Nei & Gojobori 1986. dN/dS (dN, dS) 293 | (Pairwise deletion) 294 | (Note: This matrix is not used in later ML. analysis. 295 | Use runmode = -2 for ML pairwise comparison.) 296 | 297 | A 298 | B 0.0186 (0.0012 0.0642) 299 | C 0.0373 (0.0042 0.1123) 0.0214 (0.0030 0.1398) 300 | D 0.0364 (0.0120 0.3307) 0.0315 (0.0108 0.3435) 0.0381 (0.0126 0.3315) 301 | E 0.0413 (0.0051 0.1232) 0.0241 (0.0039 0.1615) 0.0339 (0.0030 0.0880) 0.0416 (0.0135 0.3257) 302 | F 0.0543 (0.0030 0.0550) 0.0307 (0.0030 0.0972) 0.0336 (0.0048 0.1425) 0.0399 (0.0138 0.3471) 0.0370 (0.0057 0.1538) 303 | G 0.0679 (0.0092 0.1356) 0.0501 (0.0080 0.1592) 0.0597 (0.0086 0.1437) 0.0547 (0.0154 0.2816) 0.0602 (0.0095 0.1580) 0.0627 (0.0098 0.1566) 304 | H 0.0569 (0.0042 0.0736) 0.0286 (0.0030 0.1046) 0.0419 (0.0036 0.0856) 0.0406 (0.0126 0.3112) 0.0466 (0.0045 0.0962) 0.0447 (0.0048 0.1071) 0.0838 (0.0086 0.1024) 305 | I 0.0520 (0.0024 0.0459) 0.0180 (0.0012 0.0664) 0.0188 (0.0018 0.0951) 0.0348 (0.0108 0.3108) 0.0233 (0.0027 0.1156) 0.0543 (0.0030 0.0550) 0.0507 (0.0067 0.1328) 0.0236 (0.0018 0.0759) 306 | J 0.0366 (0.0060 0.1633) 0.0248 (0.0048 0.1927) 0.0334 (0.0054 0.1610) 0.0380 (0.0084 0.2208) 0.0353 (0.0063 0.1780) 0.0337 (0.0066 0.1957) 0.0516 (0.0067 0.1306) 0.0385 (0.0054 0.1399) 0.0223 (0.0036 0.1605) 307 | K 0.0229 (0.0144 0.6301) 0.0198 (0.0132 0.6694) 0.0225 (0.0150 0.6676) 0.0150 (0.0084 0.5588) 0.0252 (0.0160 0.6325) 0.0230 (0.0163 0.7075) 0.0266 (0.0173 0.6483) 0.0233 (0.0150 0.6451) 0.0204 (0.0132 0.6491) 0.0193 (0.0108 0.5607) 308 | L 0.0289 (0.0054 0.1879) 0.0191 (0.0041 0.2135) 0.0248 (0.0047 0.1915) 0.0414 (0.0088 0.2139) 0.0285 (0.0058 0.2023) 0.0273 (0.0061 0.2237) 0.0531 (0.0082 0.1536) 0.0292 (0.0048 0.1629) 0.0142 (0.0027 0.1909) 0.0147 (0.0007 0.0462) 0.0205 (0.0109 0.5304) 309 | M 0.0401 (0.0024 0.0596) 0.0234 (0.0024 0.1021) 0.0274 (0.0042 0.1528) 0.0367 (0.0132 0.3608) 0.0310 (0.0051 0.1643) 0.1043 (0.0018 0.0172) 0.0550 (0.0092 0.1674) 0.0366 (0.0042 0.1145) 0.0372 (0.0024 0.0642) 0.0289 (0.0060 0.2068) 0.0221 (0.0157 0.7076) 0.0229 (0.0054 0.2372) 310 | N 0.0210 (0.0132 0.6296) 0.0188 (0.0120 0.6383) 0.0231 (0.0138 0.5976) 0.0140 (0.0072 0.5149) 0.0237 (0.0144 0.6101) 0.0220 (0.0150 0.6854) 0.0251 (0.0160 0.6382) 0.0220 (0.0138 0.6297) 0.0191 (0.0120 0.6287) 0.0178 (0.0096 0.5381) 0.0116 (0.0024 0.2052) 0.0183 (0.0095 0.5208) 0.0212 (0.0144 0.6802) 311 | O 0.0392 (0.0054 0.1374) 0.0245 (0.0042 0.1711) 0.0312 (0.0036 0.1149) 0.0375 (0.0138 0.3686) 0.0409 (0.0042 0.1024) 0.0344 (0.0060 0.1739) 0.0524 (0.0098 0.1871) 0.0384 (0.0048 0.1247) 0.0222 (0.0030 0.1347) 0.0318 (0.0066 0.2073) 0.0238 (0.0163 0.6829) 0.0265 (0.0061 0.2310) 0.0329 (0.0060 0.1820) 0.0217 (0.0150 0.6930) 312 | 313 | 314 | TREE # 1: (11, 14, (4, (12, (10, (7, ((3, (5, 15)), (8, (9, (2, (1, (6, 13))))))))))); MP score: -1 315 | lnL(ntime: 27 np: 55): -5628.637236 +0.000000 316 | 16..11 16..14 16..17 17..4 17..18 18..12 18..19 19..10 19..20 20..7 20..21 21..22 22..3 22..23 23..5 23..15 21..24 24..8 24..25 25..9 25..26 26..2 26..27 27..1 27..28 28..6 28..13 317 | 0.081785 0.062341 0.231628 0.082021 0.059308 0.005508 0.014684 0.013996 0.045745 0.045746 0.023675 0.015959 0.027730 0.008328 0.031104 0.048389 0.000555 0.021007 0.020359 0.014739 0.003500 0.031643 0.008072 0.010340 0.028303 0.006649 0.009195 6.110810 0.022378 0.009459 0.012917 0.038502 0.096418 0.000100 0.000100 0.045747 0.041853 0.162082 0.054894 0.039528 0.046108 0.000100 0.064093 0.053797 0.000100 0.102771 0.000100 0.000100 1.559056 0.000100 0.086325 0.064553 0.045282 0.298020 0.073750 318 | SEs for parameters: 319 | 0.015755 0.014524 0.026373 0.015658 0.014166 0.121311 0.682841 0.132105 0.009661 0.009257 0.007574 0.006429 0.007025 1.099197 0.007941 0.009393 3.899253 0.005851 6.126142 2.850253 0.003503 0.011623 0.003756 0.004265 0.007592 0.003493 0.003841 0.837098 0.014030 0.009970 0.006370 0.019445 0.048814 9.206165 19.429175 4.372054 0.026256 0.072953 0.080463 0.068786 0.038140 55.159993 0.056843 0.031655 2938.708256 0.069201 125.783359 80.828287 4.753010 0.117736 0.098996 0.071083 0.047098 0.310524 0.081406 320 | 321 | Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site). 322 | 323 | tree length = 0.95231 324 | 325 | (11: 0.081785, 14: 0.062341, (4: 0.082021, (12: 0.005508, (10: 0.013996, (7: 0.045746, ((3: 0.027730, (5: 0.031104, 15: 0.048389): 0.008328): 0.015959, (8: 0.021007, (9: 0.014739, (2: 0.031643, (1: 0.010340, (6: 0.006649, 13: 0.009195): 0.028303): 0.008072): 0.003500): 0.020359): 0.000555): 0.023675): 0.045745): 0.014684): 0.059308): 0.231628); 326 | 327 | (K: 0.081785, N: 0.062341, (D: 0.082021, (L: 0.005508, (J: 0.013996, (G: 0.045746, ((C: 0.027730, (E: 0.031104, O: 0.048389): 0.008328): 0.015959, (H: 0.021007, (I: 0.014739, (B: 0.031643, (A: 0.010340, (F: 0.006649, M: 0.009195): 0.028303): 0.008072): 0.003500): 0.020359): 0.000555): 0.023675): 0.045745): 0.014684): 0.059308): 0.231628); 328 | 329 | Detailed output identifying parameters 330 | 331 | kappa (ts/tv) = 6.11081 332 | 333 | w (dN/dS) for branches: 0.02238 0.00946 0.01292 0.03850 0.09642 0.00010 0.00010 0.04575 0.04185 0.16208 0.05489 0.03953 0.04611 0.00010 0.06409 0.05380 0.00010 0.10277 0.00010 0.00010 1.55906 0.00010 0.08632 0.06455 0.04528 0.29802 0.07375 334 | 335 | dN & dS for each branch 336 | 337 | branch t N S dN/dS dN dS N*dN S*dS 338 | 339 | 16..11 0.082 1514.9 633.1 0.0224 0.0020 0.0878 3.0 55.6 340 | 16..14 0.062 1514.9 633.1 0.0095 0.0007 0.0689 1.0 43.6 341 | 16..17 0.232 1514.9 633.1 0.0129 0.0033 0.2541 5.0 160.9 342 | 17..4 0.082 1514.9 633.1 0.0385 0.0033 0.0849 5.0 53.8 343 | 17..18 0.059 1514.9 633.1 0.0964 0.0053 0.0545 8.0 34.5 344 | 18..12 0.006 1514.9 633.1 0.0001 0.0000 0.0062 0.0 3.9 345 | 18..19 0.015 1514.9 633.1 0.0001 0.0000 0.0166 0.0 10.5 346 | 19..10 0.014 1514.9 633.1 0.0457 0.0007 0.0143 1.0 9.0 347 | 19..20 0.046 1514.9 633.1 0.0419 0.0020 0.0470 3.0 29.8 348 | 20..7 0.046 1514.9 633.1 0.1621 0.0060 0.0373 9.2 23.6 349 | 20..21 0.024 1514.9 633.1 0.0549 0.0013 0.0237 2.0 15.0 350 | 21..22 0.016 1514.9 633.1 0.0395 0.0007 0.0165 1.0 10.4 351 | 22..3 0.028 1514.9 633.1 0.0461 0.0013 0.0282 2.0 17.9 352 | 22..23 0.008 1514.9 633.1 0.0001 0.0000 0.0094 0.0 6.0 353 | 23..5 0.031 1514.9 633.1 0.0641 0.0020 0.0305 3.0 19.3 354 | 23..15 0.048 1514.9 633.1 0.0538 0.0026 0.0485 4.0 30.7 355 | 21..24 0.001 1514.9 633.1 0.0001 0.0000 0.0006 0.0 0.4 356 | 24..8 0.021 1514.9 633.1 0.1028 0.0020 0.0191 3.0 12.1 357 | 24..25 0.020 1514.9 633.1 0.0001 0.0000 0.0230 0.0 14.6 358 | 25..9 0.015 1514.9 633.1 0.0001 0.0000 0.0167 0.0 10.6 359 | 25..26 0.003 1514.9 633.1 1.5591 0.0013 0.0008 2.0 0.5 360 | 26..2 0.032 1514.9 633.1 0.0001 0.0000 0.0358 0.0 22.7 361 | 26..27 0.008 1514.9 633.1 0.0863 0.0007 0.0076 1.0 4.8 362 | 27..1 0.010 1514.9 633.1 0.0646 0.0007 0.0101 1.0 6.4 363 | 27..28 0.028 1514.9 633.1 0.0453 0.0013 0.0289 2.0 18.3 364 | 28..6 0.007 1514.9 633.1 0.2980 0.0013 0.0044 2.0 2.8 365 | 28..13 0.009 1514.9 633.1 0.0738 0.0007 0.0088 1.0 5.6 366 | 367 | tree length for dN: 0.0388 368 | tree length for dS: 0.9843 369 | 370 | dS tree: 371 | (K: 0.087793, N: 0.068943, (D: 0.084936, (L: 0.006227, (J: 0.014267, (G: 0.037278, ((C: 0.028244, (E: 0.030499, O: 0.048484): 0.009417): 0.016489, (H: 0.019069, (I: 0.016665, (B: 0.035777, (A: 0.010129, (F: 0.004389, M: 0.008840): 0.028880): 0.007566): 0.000837): 0.023020): 0.000627): 0.023666): 0.047026): 0.016603): 0.054500): 0.254102); 372 | dN tree: 373 | (K: 0.001965, N: 0.000652, (D: 0.003270, (L: 0.000001, (J: 0.000653, (G: 0.006042, ((C: 0.001302, (E: 0.001955, O: 0.002608): 0.000001): 0.000652, (H: 0.001960, (I: 0.000002, (B: 0.000004, (A: 0.000654, (F: 0.001308, M: 0.000652): 0.001308): 0.000653): 0.001305): 0.000002): 0.000000): 0.001299): 0.001968): 0.000002): 0.005255): 0.003282); 374 | 375 | w ratios as labels for TreeView: 376 | (K #0.0224 , N #0.0095 , (D #0.0385 , (L #0.0001 , (J #0.0457 , (G #0.1621 , ((C #0.0461 , (E #0.0641 , O #0.0538 ) #0.0001 ) #0.0395 , (H #0.1028 , (I #0.0001 , (B #0.0001 , (A #0.0646 , (F #0.2980 , M #0.0738 ) #0.0453 ) #0.0863 ) #1.5591 ) #0.0001 ) #0.0001 ) #0.0549 ) #0.0419 ) #0.0001 ) #0.0964 ) #0.0129 ); 377 | 378 | 379 | Time used: 13:47:53 380 | -------------------------------------------------------------------------------- /data/compra-NHX.nhx: -------------------------------------------------------------------------------- 1 | (((((((((ENSACAP00000008923:0.231356[&&NHX:D=N:G=ENSACAG00000009105:T=28377],ENSPSIP00000012530:0.366035[&&NHX:D=N:G=ENSPSIG00000011302:T=13735])Sauria:0.120182[&&NHX:D=N:B=90:T=32561],(((((((ENSEEUP00000000489:0.10754[&&NHX:D=N:G=ENSEEUG00000000559:T=9365],ENSSARP00000006209:0.121797[&&NHX:D=N:G=ENSSARG00000006850:T=42254])Insectivora:0.011488[&&NHX:D=N:B=14:T=9362],ENSETEP00000005758:0.08913[&&NHX:D=N:G=ENSETEG00000007093:T=9371])Eutheria:0[&&NHX:D=N:B=1:T=9347],(((ENSOPRP00000015274:0[&&NHX:D=N:G=ENSOPRG00000016726:T=9978],ENSOPRP00000015276:0[&&NHX:D=N:G=ENSOPRG00000016735:T=9978])Ochotona_princeps:0[&&NHX:D=Y:T=9978],ENSOPRP00000015287:0[&&NHX:D=N:G=ENSOPRG00000016740:T=9978])Ochotona_princeps:0[&&NHX:D=Y:T=9978],(((((((((ENSPTRP00000010559:0.001366[&&NHX:D=N:G=ENSPTRG00000006219:T=9598],ENSP00000371994:0.004121[&&NHX:D=N:G=ENSG00000205978:T=9606])Homininae:0.001355[&&NHX:D=N:B=49:T=207598],ENSGGOP00000015779:0.002758[&&NHX:D=N:G=ENSGGOG00000016176:T=9595])Homininae:0.004304[&&NHX:D=N:B=46:T=207598],ENSPPYP00000006487:0.008072[&&NHX:D=N:G=ENSPPYG00000005705:T=9601])Hominidae:0[&&NHX:D=N:B=22:T=9604],ENSNLEP00000018817:0.002921[&&NHX:D=N:G=ENSNLEG00000015511:T=61853])Hominoidea:0.009245[&&NHX:D=N:B=21:T=314295],ENSCJAP00000011803:0.023128[&&NHX:D=N:G=ENSCJAG00000006385:T=9483])Simiiformes:0.019552[&&NHX:D=N:B=73:T=314293],ENSOGAP00000022494:0.063745[&&NHX:D=N:G=ENSOGAG00000024360:T=30611])Primates:0.003267[&&NHX:D=N:B=13:T=9443],((ENSSTOP00000021655:0.051339[&&NHX:D=N:G=ENSSTOG00000024004:T=43179],ENSMUSP00000129557:0.142149[&&NHX:D=N:G=ENSMUSG00000075592:T=10090])Sciurognathi:0.009067[&&NHX:D=N:B=0:T=33553],ENSCPOP00000012988:0.086612[&&NHX:D=N:G=ENSCPOG00000014420:T=10141])Rodentia:0.008282[&&NHX:D=N:B=0:T=9989])Euarchontoglires:0[&&NHX:D=N:B=0:T=314146],((((ENSDNOP00000033702:0.070726[&&NHX:D=N:G=ENSDNOG00000049474:T=9361],ENSOCUP00000026950:0.07442[&&NHX:D=N:G=ENSOCUG00000015163:T=9986])Eutheria:0.017824[&&NHX:D=N:B=7:T=9347],ENSLAFP00000012216:0.052762[&&NHX:D=N:G=ENSLAFG00000014582:T=9785])Eutheria:0.007273[&&NHX:D=N:B=4:T=9347],(((((ENSAMEP00000016812:0.032871[&&NHX:D=N:G=ENSAMEG00000015934:T=9646],ENSCAFP00000018255:0.061186[&&NHX:D=N:G=ENSCAFG00000012390:T=9615])Caniformia:0.022733[&&NHX:D=N:B=49:T=379584],ENSMPUP00000005611:0.051667[&&NHX:D=N:G=ENSMPUG00000005656:T=9669])Caniformia:0.005849[&&NHX:D=N:B=3:T=379584],ENSFCAP00000024050:0.025512[&&NHX:D=N:G=ENSFCAG00000022114:T=9685])Carnivora:0.025645[&&NHX:D=N:B=2:T=33554],(ENSOARP00000020486:0.01133[&&NHX:D=N:G=ENSOARG00000019074:T=9940],ENSBTAP00000009407:0.01389[&&NHX:D=N:G=ENSBTAG00000007149:T=9913])Bovidae:0.044896[&&NHX:D=N:B=99:T=9895])Laurasiatheria:0.006019[&&NHX:D=N:B=7:T=314145],ENSECAP00000014240:0.033668[&&NHX:D=N:G=ENSECAG00000016595:T=9796])Laurasiatheria:0.014229[&&NHX:D=N:B=0:T=314145])Eutheria:0[&&NHX:D=N:B=0:T=9347],((((ENSMICP00000000927:0.11535[&&NHX:D=N:G=ENSMICG00000001021:T=30608],ENSRNOP00000066468:0.218523[&&NHX:D=N:G=ENSRNOG00000048431:T=10116])Euarchontoglires:0[&&NHX:D=N:B=0:T=314146],(ENSMLUP00000010277:0.06297[&&NHX:D=N:G=ENSMLUG00000011291:T=59463],ENSEEUP00000000493:0.311234[&&NHX:D=N:G=ENSEEUG00000000564:T=9365])Laurasiatheria:0.037851[&&NHX:D=N:B=0:T=314145])Eutheria:0.053194[&&NHX:D=N:B=0:T=9347],ENSPCAP00000005150:0.113138[&&NHX:D=N:G=ENSPCAG00000005569:T=9813])Eutheria:0[&&NHX:D=N:B=0:T=9347],ENSCHOP00000002903:0.025337[&&NHX:D=N:G=ENSCHOG00000003280:T=9358])Eutheria:0[&&NHX:D=N:B=0:T=9347])Eutheria:0.014095[&&NHX:DD=Y:B=0:T=9347])Eutheria:0[&&NHX:DD=Y:B=0:T=9347],(((((ENSTSYP00000007703:0[&&NHX:D=N:G=ENSTSYG00000008389:T=9478],ENSTSYP00000007700:0[&&NHX:D=N:G=ENSTSYG00000008385:T=9478])Tarsius_syrichta:0[&&NHX:D=Y:T=9478],(ENSMMUP00000012439:0[&&NHX:D=N:G=ENSMMUG00000009513:T=9544],ENSMMUP00000033025:0[&&NHX:D=N:G=ENSMMUG00000029405:T=9544])Macaca_mulatta:0[&&NHX:D=Y:T=9544])Haplorrhini:0[&&NHX:D=N:B=2:T=376913],ENSMICP00000012972:0.072678[&&NHX:D=N:G=ENSMICG00000014236:T=30608])Primates:0[&&NHX:D=N:B=0:T=9443],((ENSDORP00000009350:0[&&NHX:D=N:G=ENSDORG00000009949:T=10020],ENSDORP00000009352:0[&&NHX:D=N:G=ENSDORG00000009953:T=10020])Dipodomys_ordii:0[&&NHX:D=Y:T=10020],(ENSTBEP00000009742:0[&&NHX:D=N:G=ENSTBEG00000011281:T=37347],ENSTBEP00000009664:0[&&NHX:D=N:G=ENSTBEG00000011179:T=37347])Tupaia_belangeri:0[&&NHX:D=Y:T=37347])Euarchontoglires:0.054902[&&NHX:D=N:B=15:T=314146])Euarchontoglires:0[&&NHX:D=N:B=0:T=314146],((((ENSPVAP00000006646:0[&&NHX:D=N:G=ENSPVAG00000007045:T=132908],ENSPVAP00000006645:0[&&NHX:D=N:G=ENSPVAG00000007044:T=132908])Pteropus_vampyrus:0[&&NHX:D=Y:T=132908],(((ENSTTRP00000011925:0[&&NHX:D=N:G=ENSTTRG00000012569:T=9739],ENSTTRP00000011926:0[&&NHX:D=N:G=ENSTTRG00000012570:T=9739])Tursiops_truncatus:0[&&NHX:D=Y:T=9739],ENSVPAP00000008118:0.061247[&&NHX:D=N:G=ENSVPAG00000008724:T=30538])Cetartiodactyla:0[&&NHX:D=N:B=8:T=91561],ENSSARP00000003918:0.265477[&&NHX:D=N:G=ENSSARG00000004331:T=42254])Laurasiatheria:0.0096[&&NHX:D=N:B=0:T=314145])Laurasiatheria:0[&&NHX:D=N:B=0:T=314145],ENSPCAP00000001748:0.077907[&&NHX:D=N:G=ENSPCAG00000001897:T=9813])Eutheria:0.043436[&&NHX:D=N:B=0:T=9347],ENSCHOP00000003500:0.08316[&&NHX:D=N:G=ENSCHOG00000003959:T=9358])Eutheria:0[&&NHX:D=N:B=0:T=9347])Eutheria:0[&&NHX:D=N:B=0:T=9347])Eutheria:0.477539[&&NHX:D=Y:B=0:T=9347])Eutheria:0.279488[&&NHX:DD=Y:B=8:T=9347])Eutheria:0.005725[&&NHX:D=Y:B=0:T=9347],((((ENSMLUP00000016132:0.030703[&&NHX:D=N:G=ENSMLUG00000017688:T=59463],ENSPVAP00000006648:0.038018[&&NHX:D=N:G=ENSPVAG00000007047:T=132908])Chiroptera:0.01662[&&NHX:D=N:B=84:T=9397],(((ENSMPUP00000005569:0.019221[&&NHX:D=N:G=ENSMPUG00000005614:T=9669],ENSAMEP00000016804:0.039067[&&NHX:D=N:G=ENSAMEG00000015925:T=9646])Caniformia:0.015961[&&NHX:D=N:B=77:T=379584],ENSCAFP00000018293:0.037171[&&NHX:D=N:G=ENSCAFG00000012409:T=9615])Caniformia:0.002474[&&NHX:D=N:B=20:T=379584],ENSFCAP00000022387:0.027998[&&NHX:D=N:G=ENSFCAG00000026055:T=9685])Carnivora:0.030298[&&NHX:D=N:B=31:T=33554])Laurasiatheria:0.002181[&&NHX:D=N:B=2:T=314145],((((ENSOARP00000020466:0.008642[&&NHX:D=N:G=ENSOARG00000019058:T=9940],ENSBTAP00000014108:0.018475[&&NHX:D=N:G=ENSBTAG00000010666:T=9913])Bovidae:0.036405[&&NHX:D=N:B=100:T=9895],ENSTTRP00000011929:0.017076[&&NHX:D=N:G=ENSTTRG00000012572:T=9739])Cetartiodactyla:0.006979[&&NHX:D=N:B=46:T=91561],ENSSSCP00000002168:0.037759[&&NHX:D=N:G=ENSSSCG00000001984:T=9823])Cetartiodactyla:0.02632[&&NHX:D=N:B=41:T=91561],ENSECAP00000018919:0.036525[&&NHX:D=N:G=ENSECAG00000021451:T=9796])Laurasiatheria:0.006062[&&NHX:D=N:B=11:T=314145])Laurasiatheria:0.004109[&&NHX:D=N:B=1:T=314145],((((ENSMICP00000012995:0.029881[&&NHX:D=N:G=ENSMICG00000014257:T=30608],ENSOGAP00000022344:0.045453[&&NHX:D=N:G=ENSOGAG00000031503:T=30611])Strepsirrhini:0.010655[&&NHX:D=N:B=88:T=376911],((((((ENSPTRP00000010562:0[&&NHX:D=N:G=ENSPTRG00000006221:T=9598],ENSP00000251343:0.001541[&&NHX:D=N:G=ENSG00000100441:T=9606])Homininae:0[&&NHX:D=N:B=53:T=207598],ENSGGOP00000015792:0.003085[&&NHX:D=N:G=ENSGGOG00000016189:T=9595])Homininae:0.006197[&&NHX:D=N:B=49:T=207598],ENSPPYP00000006489:0.001559[&&NHX:D=N:G=ENSPPYG00000005707:T=9601])Hominidae:0[&&NHX:D=N:B=50:T=9604],ENSNLEP00000018831:0.003286[&&NHX:D=N:G=ENSNLEG00000015520:T=61853])Hominoidea:0.001537[&&NHX:D=N:B=23:T=314295],ENSMMUP00000012442:0.009317[&&NHX:D=N:G=ENSMMUG00000009516:T=9544])Catarrhini:0[&&NHX:D=N:B=44:T=9526],ENSCJAP00000011757:0.033303[&&NHX:D=N:G=ENSCJAG00000006373:T=9483])Simiiformes:0.034015[&&NHX:D=N:B=95:T=314293])Primates:0.001558[&&NHX:D=N:B=53:T=9443],(((((ENSRNOP00000027802:0.03052[&&NHX:D=N:G=ENSRNOG00000020506:T=10116],ENSMUSP00000022831:0.047751[&&NHX:D=N:G=ENSMUSG00000047153:T=10090])Murinae:0.067344[&&NHX:D=N:B=100:T=39107],ENSDORP00000007915:0.138087[&&NHX:D=N:G=ENSDORG00000008433:T=10020])Sciurognathi:0.013764[&&NHX:D=N:B=8:T=33553],ENSSTOP00000021978:0.065527[&&NHX:D=N:G=ENSSTOG00000023873:T=43179])Sciurognathi:0[&&NHX:D=N:B=0:T=33553],ENSCPOP00000019036:0.086122[&&NHX:D=N:G=ENSCPOG00000021445:T=10141])Rodentia:0.00842[&&NHX:D=N:B=0:T=9989],ENSOCUP00000001851:0.089411[&&NHX:D=N:G=ENSOCUG00000002147:T=9986])Glires:0.0023[&&NHX:D=N:B=0:T=314147])Euarchontoglires:0.008182[&&NHX:D=N:B=0:T=314146],((ENSCHOP00000004760:0.030827[&&NHX:D=N:G=ENSCHOG00000005375:T=9358],ENSDNOP00000032834:0.057987[&&NHX:D=N:G=ENSDNOG00000048754:T=9361])Xenarthra:0.004673[&&NHX:D=N:B=50:T=9348],ENSLAFP00000021476:0.050612[&&NHX:D=N:G=ENSLAFG00000032315:T=9785])Eutheria:0.00943[&&NHX:D=N:B=25:T=9347])Eutheria:0.007644[&&NHX:D=N:B=0:T=9347])Eutheria:0.005895[&&NHX:D=N:B=0:T=9347])Eutheria:0.101392[&&NHX:D=Y:B=0:T=9347],(ENSMEUP00000001507:0.101027[&&NHX:D=N:G=ENSMEUG00000001643:T=9315],ENSSHAP00000008983:0.107226[&&NHX:D=N:G=ENSSHAG00000007779:T=9305])Marsupialia:0.223154[&&NHX:D=N:B=100:T=9263])Theria:0.077961[&&NHX:D=N:B=0:T=32525],ENSOANP00000012263:0.478367[&&NHX:D=N:G=ENSOANG00000007698:T=9258])Mammalia:0.070793[&&NHX:D=N:B=10:T=40674],((ENSETEP00000005752:0[&&NHX:D=N:G=ENSETEG00000007088:T=9371],ENSETEP00000005748:0[&&NHX:D=N:G=ENSETEG00000007080:T=9371])Echinops_telfairi:0[&&NHX:D=Y:T=9371],((ENSMEUP00000001489:0.027222[&&NHX:D=N:G=ENSMEUG00000001615:T=9315],ENSSHAP00000008470:0.047645[&&NHX:D=N:G=ENSSHAG00000007338:T=9305])Marsupialia:0.039668[&&NHX:D=N:B=45:T=9263],ENSMODP00000003608:0.044029[&&NHX:D=N:G=ENSMODG00000002972:T=13616])Marsupialia:0.368184[&&NHX:D=N:B=45:T=9263])Theria:0.096689[&&NHX:D=N:B=14:T=32525])Mammalia:0.233038[&&NHX:D=Y:B=5:T=40674])Amniota:0.151441[&&NHX:D=N:B=0:T=32524],ENSXETP00000036875:0.467322[&&NHX:D=N:G=ENSXETG00000016903:T=8364])Tetrapoda:0.029172[&&NHX:D=N:B=0:T=32523],ENSLACP00000007183:0.661517[&&NHX:D=N:G=ENSLACG00000006373:T=7897])Sarcopterygii:0.101165[&&NHX:D=N:B=0:T=8287],(((ENSAMXP00000022457:0.225113[&&NHX:D=N:G=ENSAMXG00000021804:T=7994],ENSDARP00000122973:0.272624[&&NHX:D=N:G=ENSDARG00000092488:T=7955])Otophysi:0.113592[&&NHX:D=N:B=97:T=186626],((((ENSXMAP00000001400:0.176066[&&NHX:D=N:G=ENSXMAG00000001401:T=8083],ENSORLP00000011382:0.235841[&&NHX:D=N:G=ENSORLG00000009076:T=8090])Atherinomorpha:0.006264[&&NHX:D=N:B=4:T=32456],ENSONIP00000000389:0.142252[&&NHX:D=N:G=ENSONIG00000000309:T=8128])Percomorpha:0.029968[&&NHX:D=N:B=0:T=32485],(ENSTRUP00000016444:0.121018[&&NHX:D=N:G=ENSTRUG00000006694:T=31033],ENSTNIP00000006282:0.162953[&&NHX:D=N:G=ENSTNIG00000003685:T=99883])Tetraodontidae:0.067723[&&NHX:D=N:B=49:T=31031])Percomorpha:0[&&NHX:D=N:B=23:T=32485],(ENSGACP00000024945:0.115706[&&NHX:D=N:G=ENSGACG00000018867:T=69293],ENSGMOP00000018975:0.226079[&&NHX:D=N:G=ENSGMOG00000017611:T=8049])Holacanthopterygii:0.097365[&&NHX:D=N:B=35:T=123370])Holacanthopterygii:0.13656[&&NHX:DD=Y:B=23:T=123370])Clupeocephala:0.04664[&&NHX:D=N:B=39:T=186625],ENSLOCP00000011371:0.176252[&&NHX:D=N:G=ENSLOCG00000009322:T=7918])Neopterygii:0.167918[&&NHX:D=N:B=1:T=41665])Euteleostomi:0.072022[&&NHX:D=N:B=0:T=117571],((((ENSAMXP00000003572:0.188408[&&NHX:D=N:G=ENSAMXG00000003493:T=7994],ENSDARP00000074624:0.193294[&&NHX:D=N:G=ENSDARG00000057491:T=7955])Otophysi:0.083587[&&NHX:D=N:B=98:T=186626],(((((ENSXMAP00000006160:0.126613[&&NHX:D=N:G=ENSXMAG00000006141:T=8083],ENSORLP00000017023:0.131458[&&NHX:D=N:G=ENSORLG00000013569:T=8090])Atherinomorpha:0.032047[&&NHX:D=N:B=13:T=32456],ENSONIP00000009294:0.084236[&&NHX:D=N:G=ENSONIG00000007367:T=8128])Percomorpha:0.044493[&&NHX:D=N:B=3:T=32485],ENSGACP00000003450:0.064319[&&NHX:D=N:G=ENSGACG00000002633:T=69293])Percomorpha:0.024179[&&NHX:DD=Y:B=4:T=32485],((ENSTRUP00000007428:0[&&NHX:D=N:G=ENSTRUG00000003167:T=31033],ENSTRUP00000000487:0[&&NHX:D=N:G=ENSTRUG00000000224:T=31033])Takifugu_rubripes:0.053091[&&NHX:D=Y:B=89:T=31033],ENSTNIP00000004863:0.05504[&&NHX:D=N:G=ENSTNIG00000002366:T=99883])Tetraodontidae:0.07696[&&NHX:D=N:B=87:T=31031])Percomorpha:0.059601[&&NHX:D=N:B=63:T=32485],ENSGMOP00000013919:0.143601[&&NHX:D=N:G=ENSGMOG00000012940:T=8049])Holacanthopterygii:0.137217[&&NHX:D=N:B=68:T=123370])Clupeocephala:0.121811[&&NHX:D=N:B=93:T=186625],ENSLOCP00000009128:0.264152[&&NHX:D=N:G=ENSLOCG00000007525:T=7918])Neopterygii:0.137854[&&NHX:D=N:B=92:T=41665],(((((((((((((((ENSMICP00000000523:0.021117[&&NHX:D=N:G=ENSMICG00000000583:T=30608],ENSOGAP00000011043:0.055364[&&NHX:D=N:G=ENSOGAG00000012341:T=30611])Strepsirrhini:0.010445[&&NHX:D=N:B=42:T=376911],ENSTBEP00000003221:0.041479[&&NHX:D=N:G=ENSTBEG00000003709:T=37347])Euarchontoglires:0.00478[&&NHX:D=N:B=9:T=314146],((ENSSTOP00000005547:0.056951[&&NHX:D=N:G=ENSSTOG00000006205:T=43179],ENSDORP00000002018:0.075397[&&NHX:D=N:G=ENSDORG00000002154:T=10020])Sciurognathi:0.000171[&&NHX:D=N:B=11:T=33553],(((ENSRNOP00000042818:0.033102[&&NHX:D=N:G=ENSRNOG00000015121:T=10116],ENSMUSP00000034074:0.034921[&&NHX:D=N:G=ENSMUSG00000031652:T=10090])Murinae:0.067482[&&NHX:D=N:B=100:T=39107],ENSCPOP00000017679:0.09878[&&NHX:D=N:G=ENSCPOG00000022635:T=10141])Rodentia:0.017228[&&NHX:D=N:B=17:T=9989],ENSOCUP00000010959:0.06088[&&NHX:D=N:G=ENSOCUG00000012740:T=9986])Glires:0.01362[&&NHX:D=N:B=0:T=314147])Glires:0.005996[&&NHX:DD=Y:B=0:T=314147])Euarchontoglires:0.004467[&&NHX:D=N:B=0:T=314146],(((ENSECAP00000021723:0.054711[&&NHX:D=N:G=ENSECAG00000024238:T=9796],ENSSARP00000008910:0.084232[&&NHX:D=N:G=ENSSARG00000009865:T=42254])Laurasiatheria:0.005465[&&NHX:D=N:B=2:T=314145],(((ENSOARP00000018210:0.006799[&&NHX:D=N:G=ENSOARG00000016957:T=9940],ENSBTAP00000026560:0.0095[&&NHX:D=N:G=ENSBTAG00000019938:T=9913])Bovidae:0.016008[&&NHX:D=N:B=99:T=9895],ENSTTRP00000015271:0.016971[&&NHX:D=N:G=ENSTTRG00000016111:T=9739])Cetartiodactyla:0.003925[&&NHX:D=N:B=83:T=91561],ENSSSCP00000003061:0.044167[&&NHX:D=N:G=ENSSSCG00000002841:T=9823])Cetartiodactyla:0.0151[&&NHX:D=N:B=54:T=91561])Laurasiatheria:0.005561[&&NHX:D=N:B=0:T=314145],(((ENSMPUP00000003004:0.015667[&&NHX:D=N:G=ENSMPUG00000003034:T=9669],ENSAMEP00000010807:0.02711[&&NHX:D=N:G=ENSAMEG00000010288:T=9646])Caniformia:0.002295[&&NHX:D=N:B=15:T=379584],ENSCAFP00000014731:0.013803[&&NHX:D=N:G=ENSCAFG00000010010:T=9615])Caniformia:0.007374[&&NHX:D=N:B=11:T=379584],ENSFCAP00000024094:0.024533[&&NHX:D=N:G=ENSFCAG00000025750:T=9685])Carnivora:0.015216[&&NHX:D=N:B=48:T=33554])Laurasiatheria:0.009087[&&NHX:D=N:B=0:T=314145])Eutheria:0[&&NHX:D=N:B=0:T=9347],(((((((ENSP00000262384:0.001335[&&NHX:D=N:G=ENSG00000102921:T=9606],ENSGGOP00000015183:0.002682[&&NHX:D=N:G=ENSGGOG00000015565:T=9595])Homininae:0.001346[&&NHX:D=N:B=60:T=207598],ENSPTRP00000013822:0.002679[&&NHX:D=N:G=ENSPTRG00000008096:T=9598])Homininae:0.002668[&&NHX:D=N:B=55:T=207598],ENSPPYP00000008279:0.002696[&&NHX:D=N:G=ENSPPYG00000007330:T=9601])Hominidae:0[&&NHX:D=N:B=78:T=9604],ENSNLEP00000000786:0.012148[&&NHX:D=N:G=ENSNLEG00000000653:T=61853])Hominoidea:0.002539[&&NHX:D=N:B=43:T=314295],ENSMMUP00000024966:0.006908[&&NHX:D=N:G=ENSMMUG00000018978:T=9544])Catarrhini:0.008644[&&NHX:D=N:B=50:T=9526],ENSCJAP00000023174:0.016516[&&NHX:D=N:G=ENSCJAG00000012640:T=9483])Simiiformes:0.030866[&&NHX:D=N:B=99:T=314293],ENSEEUP00000007379:0.066214[&&NHX:D=N:G=ENSEEUG00000008071:T=9365])Eutheria:0.009482[&&NHX:D=N:B=6:T=9347])Eutheria:0.00884[&&NHX:DD=Y:B=0:T=9347],ENSDNOP00000033904:0.043009[&&NHX:D=N:G=ENSDNOG00000043012:T=9361])Eutheria:0.0038[&&NHX:D=N:B=0:T=9347],ENSLAFP00000014834:0.074508[&&NHX:D=N:G=ENSLAFG00000017688:T=9785])Eutheria:0[&&NHX:D=N:B=0:T=9347],((ENSCHOP00000008954:0.026909[&&NHX:D=N:G=ENSCHOG00000010107:T=9358],ENSETEP00000011233:0.053348[&&NHX:D=N:G=ENSETEG00000013845:T=9371])Eutheria:0.006429[&&NHX:D=N:B=4:T=9347],(ENSVPAP00000000553:0.026016[&&NHX:D=N:G=ENSVPAG00000000597:T=30538],ENSPVAP00000003632:0.079721[&&NHX:D=N:G=ENSPVAG00000003838:T=132908])Laurasiatheria:0.014609[&&NHX:D=N:B=0:T=314145])Eutheria:0.002324[&&NHX:D=N:B=0:T=9347])Eutheria:0.091612[&&NHX:DD=Y:B=0:T=9347],ENSOANP00000000919:0.152597[&&NHX:D=N:G=ENSOANG00000000582:T=9258])Mammalia:0.017578[&&NHX:D=N:B=35:T=40674],((ENSSHAP00000019378:0.009511[&&NHX:D=N:G=ENSSHAG00000016460:T=9305],ENSMEUP00000005984:0.103951[&&NHX:D=N:G=ENSMEUG00000006533:T=9315])Marsupialia:0[&&NHX:D=N:B=96:T=9263],ENSMODP00000016222:0.117621[&&NHX:D=N:G=ENSMODG00000012970:T=13616])Marsupialia:0.074477[&&NHX:D=N:B=90:T=9263])Mammalia:0.083733[&&NHX:DD=Y:B=32:T=40674],((((ENSMGAP00000004951:0.019384[&&NHX:D=N:G=ENSMGAG00000005064:T=9103],ENSGALP00000006197:0.02389[&&NHX:D=N:G=ENSGALG00000003907:T=9031])Phasianidae:0.038441[&&NHX:D=N:B=100:T=9005],ENSAPLP00000012133:0.040532[&&NHX:D=N:G=ENSAPLG00000012344:T=8839])Neognathae:0.015[&&NHX:D=N:B=95:T=8825],(ENSFALP00000000106:0.012207[&&NHX:D=N:G=ENSFALG00000000101:T=59894],ENSTGUP00000008915:0.030632[&&NHX:D=N:G=ENSTGUG00000008647:T=59729])Passeriformes:0.056714[&&NHX:D=N:B=100:T=9126])Neognathae:0.086312[&&NHX:D=N:B=95:T=8825],ENSPSIP00000012580:0.083741[&&NHX:D=N:G=ENSPSIG00000011341:T=13735])Testudines+Archosauriagroup:0.140474[&&NHX:D=N:B=100:T=1329799])Amniota:0.04286[&&NHX:D=N:B=76:T=32524],ENSACAP00000005936:0.419544[&&NHX:D=N:G=ENSACAG00000006034:T=28377])Amniota:0.012535[&&NHX:DD=Y:B=34:T=32524],(ENSPCAP00000003583:0.092136[&&NHX:D=N:G=ENSPCAG00000003813:T=9813],ENSMLUP00000009458:0.232378[&&NHX:D=N:G=ENSMLUG00000010359:T=59463])Eutheria:0.241923[&&NHX:D=N:B=90:T=9347])Amniota:0.11032[&&NHX:DD=Y:B=24:T=32524],ENSXETP00000016323:0.333825[&&NHX:D=N:G=ENSXETG00000025007:T=8364])Tetrapoda:0.057648[&&NHX:D=N:B=16:T=32523],ENSLACP00000016971:0.22149[&&NHX:D=N:G=ENSLACG00000014946:T=7897])Sarcopterygii:0.263129[&&NHX:D=N:B=16:T=8287])Euteleostomi:0.162489[&&NHX:D=N:B=71:T=117571])Euteleostomi:0.664909[&&NHX:D=Y:B=0:T=117571],ENSCINP00000025664:0.958878[&&NHX:D=N:G=ENSCING00000014111:T=7719])Chordata:0.032863[&&NHX:D=N:B=0:T=7711],(FBpp0083248:0.612795[&&NHX:D=N:G=FBgn0038769:T=7227],C30F12.1:0.89738[&&NHX:D=N:G=WBGene00016260:T=6239])Ecdysozoa:0.10838[&&NHX:D=N:B=0:T=1206794])Bilateria:0[&&NHX:D=N:B=0:T=33213],(((((((((((((ENSOCUP00000009336:0.02464[&&NHX:D=N:G=ENSOCUG00000010856:T=9986],ENSOPRP00000012497:0.074595[&&NHX:D=N:G=ENSOPRG00000013711:T=9978])Lagomorpha:0.026518[&&NHX:D=N:B=92:T=9975],ENSPCAP00000007191:0.106785[&&NHX:D=N:G=ENSPCAG00000007720:T=9813])Eutheria:0.017227[&&NHX:D=N:B=1:T=9347],ENSEEUP00000005371:0.099274[&&NHX:D=N:G=ENSEEUG00000005907:T=9365])Eutheria:0[&&NHX:D=N:B=0:T=9347],((((((((ENSRNOP00000012314:0.038333[&&NHX:D=N:G=ENSRNOG00000009131:T=10116],ENSMUSP00000037172:0.05225[&&NHX:D=N:G=ENSMUSG00000042677:T=10090])Murinae:0.083435[&&NHX:D=N:B=100:T=39107],ENSDORP00000011910:0.079124[&&NHX:D=N:G=ENSDORG00000012666:T=10020])Sciurognathi:0.01572[&&NHX:D=N:B=12:T=33553],ENSSTOP00000021469:0.068543[&&NHX:D=N:G=ENSSTOG00000026842:T=43179])Sciurognathi:0.003425[&&NHX:D=N:B=0:T=33553],ENSCPOP00000009962:0.094087[&&NHX:D=N:G=ENSCPOG00000011081:T=10141])Rodentia:0.009517[&&NHX:D=N:B=0:T=9989],((((((((ENSPTRP00000000962:0[&&NHX:D=N:G=ENSPTRG00000000544:T=9598],ENSP00000362179:0.002679[&&NHX:D=N:G=ENSG00000163874:T=9606])Homininae:0[&&NHX:D=N:B=81:T=207598],ENSGGOP00000009055:0.005369[&&NHX:D=N:G=ENSGGOG00000009268:T=9595])Homininae:0.006697[&&NHX:D=N:B=80:T=207598],ENSPPYP00000001770:0.006848[&&NHX:D=N:G=ENSPPYG00000001534:T=9601])Hominidae:0.002121[&&NHX:D=N:B=46:T=9604],ENSNLEP00000014033:0.012412[&&NHX:D=N:G=ENSNLEG00000011545:T=61853])Hominoidea:0.014388[&&NHX:D=N:B=45:T=314295],ENSMMUP00000013530:0.020951[&&NHX:D=N:G=ENSMMUG00000010323:T=9544])Catarrhini:0.005695[&&NHX:D=N:B=99:T=9526],ENSCJAP00000003459:0.033812[&&NHX:D=N:G=ENSCJAG00000001921:T=9483])Simiiformes:0.018253[&&NHX:D=N:B=99:T=314293],ENSTSYP00000003651:0.08008[&&NHX:D=N:G=ENSTSYG00000003999:T=9478])Haplorrhini:0.015252[&&NHX:D=N:B=39:T=376913],(ENSMICP00000004365:0.029614[&&NHX:D=N:G=ENSMICG00000004790:T=30608],ENSOGAP00000019148:0.045024[&&NHX:D=N:G=ENSOGAG00000030940:T=30611])Strepsirrhini:0.018702[&&NHX:D=N:B=98:T=376911])Primates:0.010039[&&NHX:D=N:B=20:T=9443])Euarchontoglires:0.007891[&&NHX:D=N:B=0:T=314146],ENSTBEP00000008472:0.076035[&&NHX:D=N:G=ENSTBEG00000009789:T=37347])Euarchontoglires:0.004227[&&NHX:D=N:B=0:T=314146],((((((ENSMPUP00000014649:0.03157[&&NHX:D=N:G=ENSMPUG00000014758:T=9669],ENSAMEP00000001030:0.034201[&&NHX:D=N:G=ENSAMEG00000000991:T=9646])Caniformia:0.011221[&&NHX:D=N:B=100:T=379584],ENSCAFP00000004893:0.059968[&&NHX:D=N:G=ENSCAFG00000003304:T=9615])Caniformia:0.012824[&&NHX:D=N:B=36:T=379584],ENSFCAP00000008119:0.044214[&&NHX:D=N:G=ENSFCAG00000008757:T=9685])Carnivora:0.022889[&&NHX:D=N:B=20:T=33554],ENSTTRP00000008144:0.041881[&&NHX:D=N:G=ENSTTRG00000008591:T=9739])Laurasiatheria:0.014006[&&NHX:D=N:B=3:T=314145],ENSECAP00000007468:0.045144[&&NHX:D=N:G=ENSECAG00000009562:T=9796])Laurasiatheria:0.004448[&&NHX:D=N:B=0:T=314145],(ENSPVAP00000009541:0.045934[&&NHX:D=N:G=ENSPVAG00000010120:T=132908],ENSMLUP00000020468:0.053988[&&NHX:D=N:G=ENSMLUG00000027279:T=59463])Chiroptera:0.010496[&&NHX:D=N:B=4:T=9397])Laurasiatheria:0.008647[&&NHX:D=N:B=0:T=314145])Eutheria:0.002235[&&NHX:D=N:B=0:T=9347],((ENSLAFP00000015693:0.05447[&&NHX:D=N:G=ENSLAFG00000018720:T=9785],ENSETEP00000014878:0.059885[&&NHX:D=N:G=ENSETEG00000018311:T=9371])Afrotheria:0.033175[&&NHX:D=N:B=64:T=311790],ENSDNOP00000023652:0.067763[&&NHX:D=N:G=ENSDNOG00000035006:T=9361])Eutheria:0.008453[&&NHX:D=N:B=0:T=9347])Eutheria:0.008617[&&NHX:D=N:B=0:T=9347])Eutheria:0.023626[&&NHX:DD=Y:B=0:T=9347],(ENSOARP00000021222:0.018149[&&NHX:D=N:G=ENSOARG00000019760:T=9940],ENSBTAP00000015041:0.02404[&&NHX:D=N:G=ENSBTAG00000011316:T=9913])Bovidae:0.049796[&&NHX:D=N:B=100:T=9895])Eutheria:0.045963[&&NHX:DD=Y:B=3:T=9347],(((ENSSHAP00000013717:0[&&NHX:D=N:G=ENSSHAG00000011728:T=9305],ENSSHAP00000013774:0[&&NHX:D=N:G=ENSSHAG00000011780:T=9305])Sarcophilus_harrisii:0[&&NHX:D=Y:T=9305],ENSMEUP00000003096:0.06515[&&NHX:D=N:G=ENSMEUG00000003389:T=9315])Marsupialia:0.024548[&&NHX:D=N:B=67:T=9263],ENSMODP00000022186:0.057099[&&NHX:D=N:G=ENSMODG00000017794:T=13616])Marsupialia:0.120358[&&NHX:D=N:B=67:T=9263])Theria:0.028258[&&NHX:D=N:B=16:T=32525],ENSOANP00000003265:0.120342[&&NHX:D=N:G=ENSOANG00000002060:T=9258])Mammalia:0.054909[&&NHX:D=N:B=7:T=40674],ENSACAP00000017014:0.21333[&&NHX:D=N:G=ENSACAG00000017285:T=28377])Amniota:0.055125[&&NHX:D=N:B=64:T=32524],((((ENSGALP00000003140:0.013031[&&NHX:D=N:G=ENSGALG00000002021:T=9031],ENSMGAP00000003068:0.02146[&&NHX:D=N:G=ENSMGAG00000003371:T=9103])Phasianidae:0.051845[&&NHX:D=N:B=100:T=9005],ENSAPLP00000006914:0.035219[&&NHX:D=N:G=ENSAPLG00000007281:T=8839])Neognathae:0.061086[&&NHX:D=N:B=97:T=8825],((ENSTGUP00000001614:0[&&NHX:D=N:G=ENSTGUG00000001563:T=59729],ENSTGUP00000014631:0.010405[&&NHX:D=N:G=ENSTGUG00000014252:T=59729])Taeniopygia_guttata:0.028083[&&NHX:D=Y:B=56:T=59729],ENSFALP00000000921:0.033213[&&NHX:D=N:G=ENSFALG00000000890:T=59894])Passeriformes:0.088611[&&NHX:D=N:B=56:T=9126])Neognathae:0.023542[&&NHX:D=N:B=0:T=8825],ENSPSIP00000010145:0.159935[&&NHX:D=N:G=ENSPSIG00000009198:T=13735])Testudines+Archosauriagroup:0.102906[&&NHX:D=N:B=0:T=1329799])Amniota:0.035379[&&NHX:DD=Y:B=17:T=32524],(((((((ENSORLP00000018100:0.164385[&&NHX:D=N:G=ENSORLG00000014448:T=8090],ENSXMAP00000014667:0.176534[&&NHX:D=N:G=ENSXMAG00000014646:T=8083])Atherinomorpha:0.025328[&&NHX:D=N:B=28:T=32456],ENSGACP00000018304:0.157465[&&NHX:D=N:G=ENSGACG00000013859:T=69293])Smegmamorpha:0.010115[&&NHX:D=N:B=2:T=129949],ENSONIP00000020441:0.139847[&&NHX:D=N:G=ENSONIG00000016235:T=8128])Percomorpha:0.137145[&&NHX:D=N:B=4:T=32485],ENSGMOP00000007934:0.234442[&&NHX:D=N:G=ENSGMOG00000007388:T=8049])Holacanthopterygii:0.091668[&&NHX:D=N:B=83:T=123370],(ENSAMXP00000001771:0.145459[&&NHX:D=N:G=ENSAMXG00000001736:T=7994],ENSDARP00000061719:0.151806[&&NHX:D=N:G=ENSDARG00000005271:T=7955])Otophysi:0.150277[&&NHX:D=N:B=100:T=186626])Clupeocephala:0.020052[&&NHX:D=N:B=27:T=186625],((((((ENSORLP00000011872:0.143025[&&NHX:D=N:G=ENSORLG00000009473:T=8090],ENSXMAP00000013231:0.178831[&&NHX:D=N:G=ENSXMAG00000013202:T=8083])Atherinomorpha:0.05231[&&NHX:D=N:B=58:T=32456],ENSONIP00000017222:0.121853[&&NHX:D=N:G=ENSONIG00000013685:T=8128])Percomorpha:0.028105[&&NHX:D=N:B=1:T=32485],ENSGACP00000003045:0.120013[&&NHX:D=N:G=ENSGACG00000002341:T=69293])Percomorpha:0[&&NHX:DD=Y:B=0:T=32485],(ENSTRUP00000026666:0.088133[&&NHX:D=N:G=ENSTRUG00000010565:T=31033],ENSTNIP00000000782:0.142132[&&NHX:D=N:G=ENSTNIG00000001274:T=99883])Tetraodontidae:0.080435[&&NHX:D=N:B=98:T=31031])Percomorpha:0.076033[&&NHX:D=N:B=21:T=32485],ENSGMOP00000018932:0.250046[&&NHX:D=N:G=ENSGMOG00000017603:T=8049])Holacanthopterygii:0.058085[&&NHX:D=N:B=81:T=123370],(ENSAMXP00000021518:0.173079[&&NHX:D=N:G=ENSAMXG00000020895:T=7994],ENSDARP00000095914:0.22952[&&NHX:D=N:G=ENSDARG00000016062:T=7955])Otophysi:0.090805[&&NHX:D=N:B=100:T=186626])Clupeocephala:0.064258[&&NHX:D=N:B=53:T=186625])Clupeocephala:0.040315[&&NHX:D=Y:B=7:T=186625],ENSLOCP00000003817:0.178312[&&NHX:D=N:G=ENSLOCG00000003232:T=7918])Neopterygii:0.091239[&&NHX:D=N:B=1:T=41665])Euteleostomi:0.005184[&&NHX:D=N:B=8:T=117571],(ENSLACP00000019750:0.232037[&&NHX:D=N:G=ENSLACG00000017365:T=7897],ENSXETP00000025039:0.337033[&&NHX:D=N:G=ENSXETG00000011465:T=8364])Sarcopterygii:0.100602[&&NHX:D=N:B=50:T=8287])Euteleostomi:0.093276[&&NHX:DD=Y:B=9:T=117571],((((((((((ENSXMAP00000014740:0.119536[&&NHX:D=N:G=ENSXMAG00000014715:T=8083],ENSORLP00000011526:0.12097[&&NHX:D=N:G=ENSORLG00000009188:T=8090])Atherinomorpha:0.042462[&&NHX:D=N:B=66:T=32456],ENSGACP00000001735:0.107382[&&NHX:D=N:G=ENSGACG00000001339:T=69293])Smegmamorpha:0[&&NHX:D=N:B=20:T=129949],(ENSTRUP00000039375:0.056024[&&NHX:D=N:G=ENSTRUG00000015402:T=31033],ENSTNIP00000018759:0.056487[&&NHX:D=N:G=ENSTNIG00000015684:T=99883])Tetraodontidae:0.110827[&&NHX:D=N:B=89:T=31031])Percomorpha:0.047419[&&NHX:D=N:B=27:T=32485],ENSGMOP00000019342:0.18397[&&NHX:D=N:G=ENSGMOG00000017975:T=8049])Holacanthopterygii:0.054185[&&NHX:D=N:B=16:T=123370],(((ENSGACP00000018749:0.090823[&&NHX:D=N:G=ENSGACG00000014201:T=69293],ENSXMAP00000012374:0.111091[&&NHX:D=N:G=ENSXMAG00000012354:T=8083])Smegmamorpha:0.013888[&&NHX:D=N:B=40:T=129949],ENSONIP00000015449:0.105204[&&NHX:D=N:G=ENSONIG00000012268:T=8128])Percomorpha:0.030332[&&NHX:D=N:B=32:T=32485],(ENSTRUP00000015133:0.06871[&&NHX:D=N:G=ENSTRUG00000006214:T=31033],ENSTNIP00000017542:0.080237[&&NHX:D=N:G=ENSTNIG00000014519:T=99883])Tetraodontidae:0.048585[&&NHX:D=N:B=100:T=31031])Percomorpha:0.121427[&&NHX:D=N:B=81:T=32485])Holacanthopterygii:0.031746[&&NHX:D=Y:B=3:T=123370],ENSAMXP00000005455:0.206146[&&NHX:D=N:G=ENSAMXG00000005320:T=7994])Clupeocephala:0.04799[&&NHX:D=N:B=4:T=186625],ENSLOCP00000013128:0.114304[&&NHX:D=N:G=ENSLOCG00000010717:T=7918])Neopterygii:0.057172[&&NHX:D=N:B=16:T=41665],(((ENSOANP00000008197:0[&&NHX:D=N:G=ENSOANG00000005155:T=9258],ENSCJAP00000036399:0.647869[&&NHX:D=N:G=ENSCJAG00000019606:T=9483])Mammalia:0.039717[&&NHX:D=N:B=87:T=40674],ENSXETP00000038586:0.217436[&&NHX:D=N:G=ENSXETG00000033837:T=8364])Tetrapoda:0[&&NHX:D=N:B=0:T=32523],(((((((ENSMGAP00000016060:0.008498[&&NHX:D=N:G=ENSMGAG00000015143:T=9103],ENSGALP00000027652:0.008656[&&NHX:D=N:G=ENSGALG00000017154:T=9031])Phasianidae:0.031674[&&NHX:D=N:B=98:T=9005],ENSAPLP00000002301:0.041728[&&NHX:D=N:G=ENSAPLG00000002854:T=8839])Neognathae:0.008922[&&NHX:D=N:B=43:T=8825],(ENSFALP00000009159:0.022272[&&NHX:D=N:G=ENSFALG00000008776:T=59894],ENSTGUP00000011592:0.029979[&&NHX:D=N:G=ENSTGUG00000011244:T=59729])Passeriformes:0.022[&&NHX:D=N:B=83:T=9126])Neognathae:0.058344[&&NHX:D=N:B=33:T=8825],ENSPSIP00000006437:0.051381[&&NHX:D=N:G=ENSPSIG00000005959:T=13735])Testudines+Archosauriagroup:0.015169[&&NHX:D=N:B=42:T=1329799],ENSACAP00000000964:0.080357[&&NHX:D=N:G=ENSACAG00000001031:T=28377])Sauria:0.019625[&&NHX:D=N:B=38:T=32561],((((ENSSHAP00000006428:0.019927[&&NHX:D=N:G=ENSSHAG00000005597:T=9305],ENSMEUP00000014057:0.041[&&NHX:D=N:G=ENSMEUG00000015398:T=9315])Marsupialia:0.011426[&&NHX:D=N:B=25:T=9263],ENSMODP00000018180:0.016729[&&NHX:D=N:G=ENSMODG00000014555:T=13616])Marsupialia:0.056238[&&NHX:D=N:B=25:T=9263],(((((((ENSSTOP00000019848:0.018876[&&NHX:D=N:G=ENSSTOG00000022143:T=43179],ENSTBEP00000000853:0.04593[&&NHX:D=N:G=ENSTBEG00000000993:T=37347])Euarchontoglires:0.006675[&&NHX:D=N:B=25:T=314146],((((((ENSGGOP00000009875:0.003456[&&NHX:D=N:G=ENSGGOG00000010117:T=9595],ENSP00000278590:0.003912[&&NHX:D=N:G=ENSG00000149289:T=9606])Homininae:0[&&NHX:D=N:B=2:T=207598],ENSPTRP00000007325:0.001299[&&NHX:D=N:G=ENSPTRG00000004258:T=9598])Homininae:0[&&NHX:D=N:B=0:T=207598],ENSPPYP00000004411:0.0013[&&NHX:D=N:G=ENSPPYG00000003851:T=9601])Hominidae:0[&&NHX:D=N:B=1:T=9604],ENSNLEP00000008836:0.005215[&&NHX:D=N:G=ENSNLEG00000007246:T=61853])Hominoidea:0.004533[&&NHX:D=N:B=18:T=314295],ENSMMUP00000002992:0.010457[&&NHX:D=N:G=ENSMMUG00000002240:T=9544])Catarrhini:0.004865[&&NHX:D=N:B=74:T=9526],ENSCJAP00000019022:0.018472[&&NHX:D=N:G=ENSCJAG00000010319:T=9483])Simiiformes:0.018705[&&NHX:D=N:B=82:T=314293])Euarchontoglires:0[&&NHX:D=N:B=12:T=314146],((((ENSMUSP00000127603:0.021189[&&NHX:D=N:G=ENSMUSG00000035164:T=10090],ENSRNOP00000016638:0.032594[&&NHX:D=N:G=ENSRNOG00000012470:T=10116])Murinae:0.037704[&&NHX:D=N:B=97:T=39107],ENSDORP00000008579:0.082525[&&NHX:D=N:G=ENSDORG00000009134:T=10020])Sciurognathi:0.013494[&&NHX:D=N:B=24:T=33553],(ENSOCUP00000004580:0.037307[&&NHX:D=N:G=ENSOCUG00000005283:T=9986],ENSOPRP00000003089:0.051281[&&NHX:D=N:G=ENSOPRG00000003370:T=9978])Lagomorpha:0.029484[&&NHX:D=N:B=85:T=9975])Glires:0.008094[&&NHX:D=N:B=4:T=314147],((ENSOGAP00000011847:0.040201[&&NHX:D=N:G=ENSOGAG00000013223:T=30611],ENSTSYP00000004934:0.080127[&&NHX:D=N:G=ENSTSYG00000005412:T=9478])Primates:0.021172[&&NHX:D=N:B=36:T=9443],ENSMICP00000010428:0.014668[&&NHX:D=N:G=ENSMICG00000011455:T=30608])Primates:0.014196[&&NHX:DD=Y:B=7:T=9443])Euarchontoglires:0.001911[&&NHX:D=N:B=0:T=314146])Euarchontoglires:0.005954[&&NHX:DD=Y:B=0:T=314146],((((ENSEEUP00000005170:0[&&NHX:D=N:G=ENSEEUG00000005709:T=9365],ENSEEUP00000002396:0[&&NHX:D=N:G=ENSEEUG00000002629:T=9365])Erinaceus_europaeus:0.046988[&&NHX:D=Y:B=94:T=9365],ENSSARP00000003092:0.055366[&&NHX:D=N:G=ENSSARG00000003433:T=42254])Insectivora:0.005935[&&NHX:D=N:B=7:T=9362],(ENSPVAP00000013505:0.029172[&&NHX:D=N:G=ENSPVAG00000014329:T=132908],ENSMLUP00000015673:0.063342[&&NHX:D=N:G=ENSMLUG00000017189:T=59463])Chiroptera:0.006309[&&NHX:D=N:B=25:T=9397])Laurasiatheria:0.000936[&&NHX:D=N:B=0:T=314145],(((ENSOARP00000013926:0.010915[&&NHX:D=N:G=ENSOARG00000012999:T=9940],ENSBTAP00000011504:0.014612[&&NHX:D=N:G=ENSBTAG00000008732:T=9913])Bovidae:0.039319[&&NHX:D=N:B=95:T=9895],ENSTTRP00000004853:0.017004[&&NHX:D=N:G=ENSTTRG00000005096:T=9739])Cetartiodactyla:0.021914[&&NHX:D=N:B=79:T=91561],ENSECAP00000000297:0.031882[&&NHX:D=N:G=ENSECAG00000000462:T=9796])Laurasiatheria:0.004193[&&NHX:D=N:B=0:T=314145])Laurasiatheria:0.009109[&&NHX:D=N:B=0:T=314145])Eutheria:0.004186[&&NHX:D=N:B=0:T=9347],(ENSLAFP00000024156:0.045652[&&NHX:D=N:G=ENSLAFG00000016296:T=9785],ENSPCAP00000014634:0.048837[&&NHX:D=N:G=ENSPCAG00000015682:T=9813])Afrotheria:0.018159[&&NHX:D=N:B=58:T=311790])Eutheria:0.009356[&&NHX:D=N:B=0:T=9347],(((ENSSSCP00000015938:0.045408[&&NHX:D=N:G=ENSSSCG00000015014:T=9823],ENSVPAP00000002877:0.077933[&&NHX:D=N:G=ENSVPAG00000003110:T=30538])Cetartiodactyla:0.011484[&&NHX:D=N:B=11:T=91561],(((ENSAMEP00000009662:0.025414[&&NHX:D=N:G=ENSAMEG00000009188:T=9646],ENSMPUP00000005840:0.097265[&&NHX:D=N:G=ENSMPUG00000005888:T=9669])Caniformia:0.029105[&&NHX:D=N:B=48:T=379584],ENSCAFP00000021101:0.040749[&&NHX:D=N:G=ENSCAFG00000014297:T=9615])Caniformia:0.016493[&&NHX:D=N:B=38:T=379584],ENSFCAP00000009903:0.073267[&&NHX:D=N:G=ENSFCAG00000010665:T=9685])Carnivora:0.044371[&&NHX:D=N:B=56:T=33554])Laurasiatheria:0.003064[&&NHX:D=N:B=0:T=314145],(ENSETEP00000006520:0.094839[&&NHX:D=N:G=ENSETEG00000008027:T=9371],ENSCPOP00000007190:0.109803[&&NHX:D=N:G=ENSCPOG00000007988:T=10141])Eutheria:0.026166[&&NHX:D=N:B=4:T=9347])Eutheria:0.032167[&&NHX:D=N:B=1:T=9347])Eutheria:0.001995[&&NHX:DD=Y:B=0:T=9347],(ENSDNOP00000010121:0.033228[&&NHX:D=N:G=ENSDNOG00000013040:T=9361],ENSCHOP00000011691:0.036371[&&NHX:D=N:G=ENSCHOG00000013202:T=9358])Xenarthra:0.005643[&&NHX:D=N:B=56:T=9348])Eutheria:0.057579[&&NHX:D=N:B=0:T=9347])Theria:0.013435[&&NHX:D=N:B=41:T=32525],ENSOANP00000009990:0.136702[&&NHX:D=N:G=ENSOANG00000006242:T=9258])Mammalia:0.029202[&&NHX:D=N:B=17:T=40674])Amniota:0.04185[&&NHX:D=N:B=24:T=32524],ENSLACP00000010559:0.176434[&&NHX:D=N:G=ENSLACG00000009305:T=7897])Sarcopterygii:0.066806[&&NHX:D=N:B=25:T=8287])Sarcopterygii:0.148858[&&NHX:D=Y:B=0:T=8287])Euteleostomi:0.042621[&&NHX:D=N:B=6:T=117571],(((ENSLACP00000021899:0.16289[&&NHX:D=N:G=ENSLACG00000014526:T=7897],ENSXETP00000038587:0.305669[&&NHX:D=N:G=ENSXETG00000017794:T=8364])Sarcopterygii:0.026347[&&NHX:D=N:B=19:T=8287],(((ENSDARP00000118051:0.140722[&&NHX:D=N:G=ENSDARG00000062463:T=7955],ENSAMXP00000011633:0.144033[&&NHX:D=N:G=ENSAMXG00000011328:T=7994])Otophysi:0.090004[&&NHX:D=N:B=98:T=186626],((((ENSORLP00000011982:0.090137[&&NHX:D=N:G=ENSORLG00000009556:T=8090],ENSXMAP00000018584:0.102458[&&NHX:D=N:G=ENSXMAG00000018548:T=8083])Atherinomorpha:0.03572[&&NHX:D=N:B=67:T=32456],ENSGACP00000026872:0.120513[&&NHX:D=N:G=ENSGACG00000020334:T=69293])Smegmamorpha:0.004788[&&NHX:D=N:B=0:T=129949],ENSONIP00000016191:0.06792[&&NHX:D=N:G=ENSONIG00000012867:T=8128])Percomorpha:0.024854[&&NHX:D=N:B=0:T=32485],(ENSTNIP00000014782:0.031565[&&NHX:D=N:G=ENSTNIG00000011828:T=99883],ENSTRUP00000030851:0.04365[&&NHX:D=N:G=ENSTRUG00000012186:T=31033])Tetraodontidae:0.046652[&&NHX:D=N:B=97:T=31031])Percomorpha:0.101405[&&NHX:D=N:B=22:T=32485])Clupeocephala:0.046068[&&NHX:D=N:B=71:T=186625],ENSLOCP00000018009:0.157309[&&NHX:D=N:G=ENSLOCG00000014631:T=7918])Neopterygii:0.040239[&&NHX:D=N:B=13:T=41665])Euteleostomi:0.027207[&&NHX:D=N:B=4:T=117571],((((((((ENSGALP00000007499:0.00265[&&NHX:D=N:G=ENSGALG00000004715:T=9031],ENSMGAP00000000132:0.010616[&&NHX:D=N:G=ENSMGAG00000000759:T=9103])Phasianidae:0.014554[&&NHX:D=N:B=97:T=9005],ENSAPLP00000003367:0.019401[&&NHX:D=N:G=ENSAPLG00000003874:T=8839])Neognathae:0.010733[&&NHX:D=N:B=66:T=8825],(ENSTGUP00000002935:0.004646[&&NHX:D=N:G=ENSTGUG00000002846:T=59729],ENSFALP00000004471:0.030686[&&NHX:D=N:G=ENSFALG00000004293:T=59894])Passeriformes:0.013148[&&NHX:D=N:B=96:T=9126])Neognathae:0.047607[&&NHX:D=N:B=66:T=8825],ENSPSIP00000018962:0.052319[&&NHX:D=N:G=ENSPSIG00000016853:T=13735])Testudines+Archosauriagroup:0.060142[&&NHX:D=N:B=97:T=1329799],ENSACAP00000013370:0.152716[&&NHX:D=N:G=ENSACAG00000013582:T=28377])Sauria:0.043257[&&NHX:D=N:B=66:T=32561],((ENSMODP00000006413:0.051364[&&NHX:D=N:G=ENSMODG00000005206:T=13616],ENSSHAP00000007513:0.056296[&&NHX:D=N:G=ENSSHAG00000006530:T=9305])Marsupialia:0.001696[&&NHX:D=N:B=83:T=9263],ENSMEUP00000012838:0.075901[&&NHX:D=N:G=ENSMEUG00000014075:T=9315])Marsupialia:0.106535[&&NHX:D=N:B=81:T=9263])Amniota:0[&&NHX:D=N:B=5:T=32524],(((((((((ENSMUSP00000080820:0.015722[&&NHX:D=N:G=ENSMUSG00000035045:T=10090],ENSRNOP00000045289:0.024397[&&NHX:D=N:G=ENSRNOG00000011508:T=10116])Murinae:0.060284[&&NHX:D=N:B=100:T=39107],ENSSTOP00000020151:0.021317[&&NHX:D=N:G=ENSSTOG00000020962:T=43179])Sciurognathi:0.004114[&&NHX:D=N:B=1:T=33553],ENSCPOP00000006892:0.059477[&&NHX:D=N:G=ENSCPOG00000007648:T=10141])Rodentia:0.009458[&&NHX:D=N:B=0:T=9989],ENSOCUP00000021262:0.03636[&&NHX:D=N:G=ENSOCUG00000006130:T=9986])Glires:0.003894[&&NHX:D=N:B=0:T=314147],(((((ENSP00000340839:0[&&NHX:D=N:G=ENSG00000102053:T=9606],ENSPTRP00000037751:0[&&NHX:D=N:G=ENSPTRG00000021969:T=9598])Homininae:0.001331[&&NHX:D=N:B=100:T=207598],ENSGGOP00000028469:0[&&NHX:D=N:G=ENSGGOG00000024638:T=9595])Homininae:0[&&NHX:D=N:B=98:T=207598],ENSNLEP00000000454:0.002665[&&NHX:D=N:G=ENSNLEG00000000383:T=61853])Hominoidea:0.003607[&&NHX:D=N:B=97:T=314295],ENSCJAP00000002536:0.016719[&&NHX:D=N:G=ENSCJAG00000001427:T=9483])Simiiformes:0.006617[&&NHX:D=N:B=86:T=314293],ENSOGAP00000021473:0.038332[&&NHX:D=N:G=ENSOGAG00000029439:T=30611])Primates:0.004617[&&NHX:D=N:B=31:T=9443])Euarchontoglires:0.004296[&&NHX:D=N:B=0:T=314146],(ENSLAFP00000012471:0.036881[&&NHX:D=N:G=ENSLAFG00000014891:T=9785],ENSDNOP00000022046:0.043885[&&NHX:D=N:G=ENSDNOG00000038439:T=9361])Eutheria:0.010722[&&NHX:D=N:B=27:T=9347])Eutheria:0.00123[&&NHX:D=N:B=0:T=9347],((((ENSOARP00000005312:0.005294[&&NHX:D=N:G=ENSOARG00000004959:T=9940],ENSBTAP00000002858:0.005447[&&NHX:D=N:G=ENSBTAG00000002206:T=9913])Bovidae:0.016233[&&NHX:D=N:B=100:T=9895],ENSSSCP00000013162:0.026082[&&NHX:D=N:G=ENSSSCG00000012367:T=9823])Cetartiodactyla:0.011289[&&NHX:D=N:B=83:T=91561],ENSMLUP00000012411:0.029294[&&NHX:D=N:G=ENSMLUG00000013635:T=59463])Laurasiatheria:0.002812[&&NHX:D=N:B=47:T=314145],(((ENSMPUP00000001151:0.014395[&&NHX:D=N:G=ENSMPUG00000001162:T=9669],ENSCAFP00000042022:0.030209[&&NHX:D=N:G=ENSCAFG00000031307:T=9615])Caniformia:0.002828[&&NHX:D=N:B=15:T=379584],ENSAMEP00000007328:0.011141[&&NHX:D=N:G=ENSAMEG00000006955:T=9646])Caniformia:0.00533[&&NHX:D=N:B=10:T=379584],ENSFCAP00000006548:0.020172[&&NHX:D=N:G=ENSFCAG00000007058:T=9685])Carnivora:0.02542[&&NHX:D=N:B=37:T=33554])Laurasiatheria:0.004349[&&NHX:D=N:B=10:T=314145])Eutheria:0.006234[&&NHX:D=N:B=0:T=9347],((((ENSETEP00000009821:0.060776[&&NHX:D=N:G=ENSETEG00000012095:T=9371],ENSDORP00000004496:0.069508[&&NHX:D=N:G=ENSDORG00000004808:T=10020])Eutheria:0.001091[&&NHX:D=N:B=0:T=9347],((ENSVPAP00000008440:0.020258[&&NHX:D=N:G=ENSVPAG00000009070:T=30538],ENSTTRP00000007065:0.020853[&&NHX:D=N:G=ENSTTRG00000007468:T=9739])Cetartiodactyla:0.004577[&&NHX:D=N:B=35:T=91561],(ENSECAP00000018432:0.014327[&&NHX:D=N:G=ENSECAG00000020993:T=9796],ENSPVAP00000016372:0.02879[&&NHX:D=N:G=ENSPVAG00000017352:T=132908])Laurasiatheria:0.005314[&&NHX:D=N:B=16:T=314145])Laurasiatheria:0.005951[&&NHX:D=N:B=5:T=314145])Eutheria:0[&&NHX:D=N:B=0:T=9347],((((((ENSPPYP00000022851:0.004426[&&NHX:D=N:G=ENSPPYG00000020416:T=9601],ENSMMUP00000016082:0.007586[&&NHX:D=N:G=ENSMMUG00000012261:T=9544])Catarrhini:0.004096[&&NHX:D=N:B=87:T=9526],ENSTSYP00000010360:0.02496[&&NHX:D=N:G=ENSTSYG00000011302:T=9478])Haplorrhini:0[&&NHX:D=N:B=37:T=376913],ENSMICP00000009749:0.025175[&&NHX:D=N:G=ENSMICG00000010697:T=30608])Primates:0[&&NHX:D=N:B=8:T=9443],ENSTBEP00000009972:0.041313[&&NHX:D=N:G=ENSTBEG00000011540:T=37347])Euarchontoglires:0.006906[&&NHX:D=N:B=0:T=314146],ENSPCAP00000015357:0.051718[&&NHX:D=N:G=ENSPCAG00000016422:T=9813])Eutheria:0.002699[&&NHX:D=N:B=0:T=9347],(ENSEEUP00000006512:0.063403[&&NHX:D=N:G=ENSEEUG00000007148:T=9365],ENSSARP00000002099:0.095514[&&NHX:D=N:G=ENSSARG00000002292:T=42254])Insectivora:0.026343[&&NHX:D=N:B=24:T=9362])Eutheria:0[&&NHX:D=N:B=0:T=9347])Eutheria:0.009275[&&NHX:DD=Y:B=0:T=9347],ENSEEUP00000002845:0.066298[&&NHX:D=N:G=ENSEEUG00000003120:T=9365])Eutheria:0.041815[&&NHX:D=Y:B=0:T=9347])Eutheria:0.068242[&&NHX:DD=Y:B=32:T=9347],FBpp0289236:1.70887[&&NHX:D=N:G=FBgn0259742:T=7227])Bilateria:0.048626[&&NHX:D=N:B=0:T=33213])Bilateria:0.065726[&&NHX:DD=Y:B=0:T=33213],ENSOANP00000013134:0.143574[&&NHX:D=N:G=ENSOANG00000008267:T=9258])Bilateria:0.049833[&&NHX:DD=Y:B=0:T=33213])Bilateria:0.118351[&&NHX:DD=Y:B=0:T=33213])Bilateria:0.050437[&&NHX:D=Y:B=0:T=33213],ENSGMOP00000001925:0.200779[&&NHX:D=N:G=ENSGMOG00000001804:T=8049])Bilateria:0.097536[&&NHX:D=Y:B=0:T=33213])Bilateria:0.045294[&&NHX:D=Y:B=0:T=33213],(((((((ENSSHAP00000020040:0.05387[&&NHX:D=N:G=ENSSHAG00000017000:T=9305],ENSMEUP00000004265:0.062678[&&NHX:D=N:G=ENSMEUG00000004686:T=9315])Marsupialia:0.045271[&&NHX:D=N:B=99:T=9263],ENSMODP00000021006:0.06062[&&NHX:D=N:G=ENSMODG00000016829:T=13616])Marsupialia:0.085752[&&NHX:D=N:B=99:T=9263],((((((ENSOGAP00000018810:0.043866[&&NHX:D=N:G=ENSOGAG00000031025:T=30611],ENSMICP00000005726:0.04573[&&NHX:D=N:G=ENSMICG00000006274:T=30608])Strepsirrhini:0.021231[&&NHX:D=N:B=98:T=376911],(((((ENSGGOP00000005396:0.001355[&&NHX:D=N:G=ENSGGOG00000005511:T=9595],ENSP00000386616:0.009536[&&NHX:D=N:G=ENSG00000178199:T=9606])Homininae:0[&&NHX:D=N:B=59:T=207598],ENSPTRP00000025128:0.001625[&&NHX:D=N:G=ENSPTRG00000018691:T=9598])Homininae:0.008006[&&NHX:D=N:B=3:T=207598],ENSPPYP00000019132:0.006948[&&NHX:D=N:G=ENSPPYG00000017087:T=9601])Hominidae:0[&&NHX:D=N:B=39:T=9604],ENSNLEP00000018583:0.080922[&&NHX:D=N:G=ENSNLEG00000015313:T=61853])Hominoidea:0.002634[&&NHX:D=N:B=36:T=314295],ENSMMUP00000019662:0.013961[&&NHX:D=N:G=ENSMMUG00000014999:T=9544])Catarrhini:0.043182[&&NHX:D=N:B=69:T=9526])Primates:0.013186[&&NHX:D=N:B=62:T=9443],((((ENSMUSP00000040217:0.038516[&&NHX:D=N:G=ENSMUSG00000039981:T=10090],ENSRNOP00000059263:0.041679[&&NHX:D=N:G=ENSRNOG00000016041:T=10116])Murinae:0.11116[&&NHX:D=N:B=100:T=39107],ENSSTOP00000012516:0.056037[&&NHX:D=N:G=ENSSTOG00000013975:T=43179])Sciurognathi:0.018679[&&NHX:D=N:B=8:T=33553],ENSCPOP00000013162:0.078435[&&NHX:D=N:G=ENSCPOG00000014608:T=10141])Rodentia:0.011342[&&NHX:D=N:B=4:T=9989],(ENSOCUP00000006649:0.036989[&&NHX:D=N:G=ENSOCUG00000007690:T=9986],ENSOPRP00000012810:0.077497[&&NHX:D=N:G=ENSOPRG00000014034:T=9978])Lagomorpha:0.039828[&&NHX:D=N:B=98:T=9975])Glires:0.020443[&&NHX:D=N:B=4:T=314147])Euarchontoglires:0.014826[&&NHX:D=N:B=0:T=314146],ENSTBEP00000000781:0.094558[&&NHX:D=N:G=ENSTBEG00000000892:T=37347])Euarchontoglires:0.008083[&&NHX:D=N:B=0:T=314146],(((((((ENSAMEP00000019322:0.02453[&&NHX:D=N:G=ENSAMEG00000018283:T=9646],ENSMPUP00000017961:0.063339[&&NHX:D=N:G=ENSMPUG00000018072:T=9669])Caniformia:0.013559[&&NHX:D=N:B=0:T=379584],ENSCAFP00000000536:0.077826[&&NHX:D=N:G=ENSCAFG00000000375:T=9615])Caniformia:0.035381[&&NHX:D=N:B=0:T=379584],ENSFCAP00000010487:0.038118[&&NHX:D=N:G=ENSFCAG00000011290:T=9685])Carnivora:0.004156[&&NHX:D=N:B=0:T=33554],ENSECAP00000014689:0.051137[&&NHX:D=N:G=ENSECAG00000017135:T=9796])Laurasiatheria:0.005165[&&NHX:D=N:B=0:T=314145],ENSEEUP00000000077:0.147582[&&NHX:D=N:G=ENSEEUG00000000087:T=9365])Laurasiatheria:0.010246[&&NHX:D=N:B=0:T=314145],((ENSSSCP00000004442:0.045748[&&NHX:D=N:G=ENSSSCG00000004109:T=9823],ENSTTRP00000000414:0.059754[&&NHX:D=N:G=ENSTTRG00000000441:T=9739])Cetartiodactyla:0.008018[&&NHX:D=N:B=24:T=91561],(ENSBTAP00000009713:0.016461[&&NHX:D=N:G=ENSBTAG00000007388:T=9913],ENSOARP00000002787:0.043683[&&NHX:D=N:G=ENSOARG00000002626:T=9940])Bovidae:0.040744[&&NHX:D=N:B=93:T=9895])Cetartiodactyla:0.018023[&&NHX:D=N:B=9:T=91561])Laurasiatheria:0.008626[&&NHX:D=N:B=0:T=314145],ENSMLUP00000017716:0.063709[&&NHX:D=N:G=ENSMLUG00000029238:T=59463])Laurasiatheria:0.01301[&&NHX:D=N:B=1:T=314145])Eutheria:0.005933[&&NHX:D=N:B=0:T=9347],((ENSLAFP00000016480:0.025552[&&NHX:D=N:G=ENSLAFG00000021535:T=9785],ENSPCAP00000002831:0.123273[&&NHX:D=N:G=ENSPCAG00000002991:T=9813])Afrotheria:0.001601[&&NHX:D=N:B=71:T=311790],ENSETEP00000013073:0.182011[&&NHX:D=N:G=ENSETEG00000016119:T=9371])Afrotheria:0.035901[&&NHX:D=N:B=5:T=311790])Eutheria:0.117578[&&NHX:D=N:B=1:T=9347])Theria:0.023905[&&NHX:D=N:B=20:T=32525],ENSOANP00000026510:0.23009[&&NHX:D=N:G=ENSOANG00000020837:T=9258])Mammalia:0.045978[&&NHX:D=N:B=17:T=40674],((((ENSMGAP00000013265:0.0651[&&NHX:D=N:G=ENSMGAG00000012594:T=9103],ENSAPLP00000008033:0.065148[&&NHX:D=N:G=ENSAPLG00000008379:T=8839])Neognathae:0.032676[&&NHX:D=N:B=99:T=8825],(ENSFALP00000013700:0.028898[&&NHX:D=N:G=ENSFALG00000013127:T=59894],ENSTGUP00000010998:0.035452[&&NHX:D=N:G=ENSTGUG00000010664:T=59729])Passeriformes:0.050991[&&NHX:D=N:B=100:T=9126])Neognathae:0.091726[&&NHX:D=N:B=99:T=8825],ENSPSIP00000018562:0.143354[&&NHX:D=N:G=ENSPSIG00000016475:T=13735])Testudines+Archosauriagroup:0.038904[&&NHX:D=N:B=88:T=1329799],ENSACAP00000006833:0.268951[&&NHX:D=N:G=ENSACAG00000006984:T=28377])Sauria:0.086587[&&NHX:D=N:B=36:T=32561])Amniota:0.086533[&&NHX:D=N:B=21:T=32524],ENSLACP00000019114:0.325478[&&NHX:D=N:G=ENSLACG00000016816:T=7897])Sarcopterygii:0.087308[&&NHX:D=N:B=28:T=8287],(((((ENSXMAP00000005025:0.119669[&&NHX:D=N:G=ENSXMAG00000005023:T=8083],ENSORLP00000019139:0.15774[&&NHX:D=N:G=ENSORLG00000015280:T=8090])Atherinomorpha:0.009699[&&NHX:D=N:B=29:T=32456],ENSGACP00000008784:0.118797[&&NHX:D=N:G=ENSGACG00000006636:T=69293])Smegmamorpha:0.059389[&&NHX:D=N:B=27:T=129949],ENSGMOP00000015430:0.246923[&&NHX:D=N:G=ENSGMOG00000014437:T=8049])Holacanthopterygii:0.068228[&&NHX:D=N:B=60:T=123370],ENSAMXP00000014506:0.258223[&&NHX:D=N:G=ENSAMXG00000014100:T=7994])Clupeocephala:0.030588[&&NHX:D=N:B=6:T=186625],ENSLOCP00000021014:0.185508[&&NHX:D=N:G=ENSLOCG00000017000:T=7918])Neopterygii:0.14519[&&NHX:D=N:B=7:T=41665])Euteleostomi:0.057211[&&NHX:D=N:B=1:T=117571])Bilateria:0.130162[&&NHX:D=Y:B=0:T=33213])Bilateria:0[&&NHX:D=Y:B=0:T=33213]; 2 | -------------------------------------------------------------------------------- /data/mr-bayes.tre: -------------------------------------------------------------------------------- 1 | #NEXUS 2 | 3 | [ID: 5328661589] 4 | begin taxa; 5 | dimensions ntax=12; 6 | taxlabels 7 | B_h 8 | B_s 9 | G_d 10 | G_k 11 | G_q 12 | G_s 13 | G_t 14 | M_s 15 | N_m 16 | P_h 17 | P_v 18 | T_n 19 | ; 20 | end; 21 | begin trees; 22 | translate 23 | 1 B_h, 24 | 2 B_s, 25 | 3 G_d, 26 | 4 G_k, 27 | 5 G_q, 28 | 6 G_s, 29 | 7 G_t, 30 | 8 M_s, 31 | 9 N_m, 32 | 10 P_h, 33 | 11 P_v, 34 | 12 T_n 35 | ; 36 | tree con_all_compat = [&U] (8[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"]:2.943109745199185e-001[&length_mean=2.950272225155929e-001,length_median=2.943109745199185e-001,length_95%HPD={2.485618091348898e-001,3.425424845003114e-001}],10[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"]:2.250620826340715e-001[&length_mean=2.250534499140199e-001,length_median=2.250620826340715e-001,length_95%HPD={1.822847208846502e-001,2.686396796151163e-001}],((((1[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"]:1.431799378617283e-001[&length_mean=1.434667402135495e-001,length_median=1.431799378617283e-001,length_95%HPD={1.210219583933537e-001,1.658691119182710e-001}],2[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"]:1.922242167721642e-001[&length_mean=1.925054374619657e-001,length_median=1.922242167721642e-001,length_95%HPD={1.676651861974173e-001,2.148522478796791e-001}])[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"]:1.245353683349655e-001[&length_mean=1.248688372674803e-001,length_median=1.245353683349655e-001,length_95%HPD={1.005841135203736e-001,1.498132671843756e-001}],9[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"]:2.275137837448304e-001[&length_mean=2.277924813713757e-001,length_median=2.275137837448304e-001,length_95%HPD={1.950058205771134e-001,2.567045912923830e-001}])[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"]:1.723837296837730e-001[&length_mean=1.731620518104221e-001,length_median=1.723837296837730e-001,length_95%HPD={1.376017473337125e-001,2.117469275389922e-001}],12[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"]:5.115548762131470e-001[&length_mean=5.124050683668143e-001,length_median=5.115548762131470e-001,length_95%HPD={4.594023342222274e-001,5.680631559912927e-001}])[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"]:1.765095090085120e-001[&length_mean=1.777328540781920e-001,length_median=1.765095090085120e-001,length_95%HPD={1.303690252305234e-001,2.252862843404868e-001}],(((3[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"]:5.462792788758022e-002[&length_mean=5.472613284477636e-002,length_median=5.462792788758022e-002,length_95%HPD={4.466013367022360e-002,6.661570549497063e-002}],(6[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"]:1.039110089822964e-002[&length_mean=1.057880538284032e-002,length_median=1.039110089822964e-002,length_95%HPD={6.653914350417256e-003,1.503884768106898e-002}],7[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"]:7.138751900115924e-003[&length_mean=7.268605459323126e-003,length_median=7.138751900115924e-003,length_95%HPD={4.073970589960203e-003,1.099183532076639e-002}])[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"]:6.936981778435844e-002[&length_mean=6.966719598364565e-002,length_median=6.936981778435844e-002,length_95%HPD={5.836922565812037e-002,8.158757916736795e-002}])[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"]:6.032946124590417e-002[&length_mean=6.067584983434337e-002,length_median=6.032946124590417e-002,length_95%HPD={4.677528083035935e-002,7.567137466226787e-002}],(4[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"]:6.270324726142586e-002[&length_mean=6.285712526128050e-002,length_median=6.270324726142586e-002,length_95%HPD={5.099085930085947e-002,7.437874155179489e-002}],5[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"]:6.314967654616613e-002[&length_mean=6.322611261887351e-002,length_median=6.314967654616613e-002,length_95%HPD={5.155537521376045e-002,7.507171566392135e-002}])[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"]:6.071716729452441e-002[&length_mean=6.075621050938821e-002,length_median=6.071716729452441e-002,length_95%HPD={4.642845667138879e-002,7.508581056573516e-002}])[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"]:1.808567923529670e-001[&length_mean=1.816205147453202e-001,length_median=1.808567923529670e-001,length_95%HPD={1.524956388014406e-001,2.138421801740872e-001}],11[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"]:2.374150747281685e-001[&length_mean=2.379775287938300e-001,length_median=2.374150747281685e-001,length_95%HPD={2.038709842554537e-001,2.737923497790377e-001}])[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"]:4.052277006185961e-001[&length_mean=4.058107993851962e-001,length_median=4.052277006185961e-001,length_95%HPD={3.460414533055098e-001,4.613427029562630e-001}])[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"]:1.161492581832516e+000[&length_mean=1.162699558201079e+000,length_median=1.161492581832516e+000,length_95%HPD={1.047553814186081e+000,1.278039981116489e+000}])[&prob=1.000000000000000e+000,prob_stddev=0.000000000000000e+000,prob_range={1.000000000000000e+000,1.000000000000000e+000},prob(percent)="100",prob+-sd="100+-0"][&length_mean=0.000000000000000e+000,length_median=0.000000000000000e+000,length_95%HPD={0.000000000000000e+000,0.000000000000000e+000}]; 37 | end; 38 | -------------------------------------------------------------------------------- /data/sample-phylip.phy: -------------------------------------------------------------------------------- 1 | 15 2148 2 | A ATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACAAACAAATTCGCATCAATATGCACACACTTAGAAGTCTGCTTCATGTACTCTGATTTCCACTTCATCGACGAACGAGGCGAATCAACTATTATAGAATCTGGCGATCCAAATGCGTTGTTGAAACACCGATTTGAAATAATCGAAGGGAGAGACCGAACAATGGCCTGGACAGTGGTGAATAGTATCTGCAACACCACTGGAGTCGAAAAACCCAAATTTCTCCCGGATCTGTATGACTACAAGGAAAACCGATTCATTGAAATTGGAGTGACGAGGAGGGAAGTCCACATATATTACCTAGAGAAAGCCAATAAAATAAAATCCGAGAAGACACACATCCACATTTTCTCATTCACTGGAGAAGAGATGGCCACCAAAGCAGATTACACTCTTGACGAAGAAAGCAGGGCAAGAATCAAAACCAGGCTGTTCACCATAAGGCAGGAAATGGCCAGCAGGGGTCTATGGGATTCCTTTCGTCAGTCCGAAAGAGGCGAAGAAACAATTGAAGAAAGATTTGAAATCACAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCAAAAGAAGTGAACGCCAGAATCGAGCCATTTCTAAAGACAACACCACGCCCTCTCAGATTGCCTAATGGGCCTCCCTGCTCTCAGCGGTCGAAATTCTTGCTGATGGATGCTCTGAAATTAAGCATTGAGGACCCGAGCCACGAAGGGGAGGGGATACCGCTATATGATGCGATCAAATGCATGAAAACGTTCTTCGGGTGGAAAGAGCCCAACATCATCAAACCACATGAGAAAGGCATAAACCCCAATTATCTCCTGACTTGGAAGCAGGTGCTAGCAGAACTTCAGGACATTGAAAATGAAGAGAAGATTCCAAGGACAAAGAACATGAAGAAAACAAGCCAATTAAAGTGGGCACTCGGTGAGAACATGGCACCGGAGAAGGTGGACTTTGAGGATTGCAAAGATGTCAACGACTTGAAACAGTACAACAGTGATGAGCCAGAGCCCAGATCACTAGCATGTTGGATCCAGAATGAATTCAACAAGGCGTGTGAACTGACTGACTCAAGCTGGGTAGAACTTGATGAAATAGGGGAAGATGTTGCCCCAATCGAACACATTGCAAGCATGAGACGGAACTATTTTACAGCAGAGGTGTCCCACTGCAGGGCTACTGAATACATAATGAAGGGAGTGTACATAAATACAGCTTTGCTCAATGCATCTTGTGCAGCCATGGATGACTTTCAACTGATTCCAATGATAAGTAAATGCAGAACCAAAGAAGGAAGACGGAAAACAAACCTATATGGATTCATTATAAAAGGAAGATCTCATTTGAGGAATGATACCGATGTGGTAAACTTTGTAAGTATGGAATTTTCCCTTACCGACCCAAGGTTGGAACCACATAAATGGGAAAAGTATTGTGTTCTTGAAATAGGGGATATGCTCCTGCGAACTGCAGTAGGCCAAGTGTCAAGACCCATGTTTCTGTATGTGAGAACCAATGGGACCTCCAAGATCAAGATGAAATGGGGTATGGAAATGAGACGCTGCCTTCTTCAATCTCTCCAACAGATTGAGAGCATGATTGAAGCTGAATCCTCCGTCAGAGAGAAAGACCTGACCAAAGAATTCTTTGAAAACAAATCAGAAACATGGCCAATTGGAGAATCACCTAAGGGAGTGGAGGAAGGTTCCATCGGGAAGGTGTGCAGAACCTTACTAGCAAAATCTGTATTCAATAGCCTATATGCATCTCCGCAACTCGAGGGGTTCTCAGCTGAATCGAGAAAACTGCTACTCATTGTTCAGGCGCTTAGGGATAACCTGGAACCTGGAACCTTCGATCTTGAAGGGCTATATGAAGCAATTGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTAAGA 3 | B ATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACAAACAAATTCGCATCAATATGCACACACTTAGAAGTCTGCTTCATGTACTCTGATTTCCACTTCATCGACGAACGAGGCGAATCAACTATTATAGAATCTGGCGATCCAAATGCGTTGCTGAAACATCGATTTGAAATAATCGAAGGGAGAGACCGAACAATGGCCTGGACAGTGGTGAATAGTATCTGCAACACCACGGGAGTCGAAAAACCCAAATTTCTCCCGGATCTGTATGACTACAAGGAAAACCGATTCATTGAAATTGGAGTGACGAGGAGGGAAGTCCACATATATTACCTAGAGAAAGCCAATAAAATAAAATCCGAGAAGACACACATCCACATTTTCTCATTCACTGGAGAAGAGATGGCCACCAAAGCAGATTACACTCTTGACGAAGAAAGCAGGGCAAGAATCAAAACCAGGCTGTTCACCATAAGGCAGGAAATGGCCAGCAGAGGTCTATGGGATTCCTTTCGTCAGTCCGAAAGAGGCGAAGAAACAATTGAAGAAAGATTTGAAATCACAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGAAAGCTTTCTCAAATGTCAAAAGAAGTGAACGCCAGAATCGAGCCATTTCTAAAGACAACACCACGCCCTCTCAGATTGCCTAATGGGCCTCCCTGTTCTCAGCGGTCGAAATTCTTGCTGATGGATGCTCTGAAATTAAGCATTGAGGACCCGAGCCACGAAGGGGAGGGGATACCGCTATATGATGCGATCAAATGCATGAAAACTTTCTTCGGGTGGAAAGAGCCCAACATTATCAAACCACATGAGAAAGGCATAAACCCCAACTATCTCCTGACTTGGAAGCAGGTGCTAGCAGAACTTCAGGACATTGAGAATGAAGAGAAGATTCCAAGGACAAAGAACATGAAAAAAACAAGCCAATTAAAGTGGGCACTCGGTGAGAACATGGCACCGGAGAAGGTGGACTTTGAGGATTGCAAAGATGTCAACGACCTGAAACAGTACGACAGTGATGAGCCAGAGCCCAGATCACTAGCATGTTGGATCCAGAATGAATTCAACAAGGCATGTGAATTGACTGATTCAAGTTGGGTAGAACTTGATGAAATAGGGGAAGATGTTGCCCCAATCGAACACATTGCAAGCATGAGACGAAACTATTTTACGGCTGAGGTGTCCCACTGCAGGGCTACTGAATACATAATGAAGGGAGTGTACATAAATACAGCTCTGCTCAATGCATCTTGTGCAGCCATGGATGACTTCCAACTGATTCCAATGATAAGTAAATGCAGAACCAAAGAAGGAAGACGGAAAACAAACCTATATGGATTCATTATAAAAGGAAGATCTCATTTGAGGAATGATACCGATGTGGTAAACTTTGTAAGTATGGAATTTTCCCTTACCGACCCAAGGTTGGAACCACATAAATGGGAAAAGTATTGTGTTCTTGAAATAGGGGACATGCTCCTGCGAACTGCAGTAGGCCAAGTGTCAAGACCCATGTTTCTGTATGTGAGAACCAATGGGACCTCCAAGATCAAGATGAAATGGGGTATGGAAATGAGACGCTGTCTTCTTCAATCTCTCCAACAGATTGAGAGCATGATTGAAGCTGAATCCTCCGTCAAAGAGAAAGACCTGACCAAGGAATTCTTTGAAAACAAATCAGAAACATGGCCAATTGGAGAATCACCTAAGGGAGTGGAGGAAGGTTCCATCGGGAAGGTGTGTAGAACCTTACTAGCAAAATCTGTATTCAATAGCCTATATGCATCTCCGCAACTCGAGGGGTTCTCAGCTGAATCGAGAAAACTGCTACTCATTGTTCAGGCACTTAGGGACAACCTGGAACCTGGAACCTTTGATCTTGAAGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTAAGA 4 | C ATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACGAACAAATTCGCATCAATATGCACACACTTAGAAGTCTGCTTCATGTACTCTGATTTCCACTTCATTGACGAACGAGGCGAATCAACCATTATAGAATCTGGCGATCCGAATGCATTGTTGAAACATCGATTTGAAATAATCGAAGGGAGAGACCGAACAATGGCCTGGACAGTGGTGAATAGTATCTGCAACACCACGGGAGTCGAGAAACCCAAATTTCTTCCGGATCTGTATGACTACAAGGAAAACCGATTCATTGAAATTGGAGTAACGAGGAGGGAAGTCCACATATACTACCTAGAGAAAGCCAATAAAATAAAATCAGAGAAGACACACATCCACATTTTCTCATTCACTGGAGAAGAGATGGCCACCAAAGCAGATTACACTCTTGACGAAGAGAGCAGAGCAAGAATCAAAACCAGGCTGTTCACCATAAGGCAGGAAATGGCCAGCAGGGGTCTATGGGATTCCTTTCGTCAGTCCGAAAGAGGCGAAGAAACAATTGAAGAAAGATTTGAAATCACAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCAAAAGAAGTGAACGCCAGAATCGAGCCATTTCTAAGGACAACACCACGCCCTCTCAGATTGCCTAGTGGGCCTCCCTGCTCTCAGCGGTCGAAATTCTTGCTGATGGATGCTCTGAAATTAAGCATTGAGGACCCGAGCCATGAAGGGGAGGGGATACCGCTATATGATGCGATCAAATGCATGAAAACGTTCTTCGGGTGGAAAGAGCCCAACATTATCAAACCACATGAGAAAGGCATAAACCCCAATTATCTCATGACTTGGAAGCAGGTTCTAGCAGAACTTCAGGACATTGAAAATGAAGAGAAGACTCCAAAGACAAAGAACATGAAGAAAACAAGCCAATTAAAATGGGCACTCGGTGAAAACATGGCACCGGAGAAGGTAGACTTTGAAGATTGCAAAGATGTCAACGACCTGAAACAATACGACAGTGATGAGCCAGAGCCCAGATCACTAGCATGTTGGATTCAGAATGAATTCAACAAGGCATGTGAATTGACCGATTCAAGCTGGGTAGAACTTGATGAAATAGGGGAAGATGTTGCTCCAATCGAACACATTGCAAGCATGAGACGGAACTATTTTACAGCAGAGGTGTCCCACTGCAGGGCTACTGAATACATAATGAAGGGAGTGTACATAAATACAGCTTTGCTTAATGCATCTTGTGCGGCCATGGATGATTTTCAACTGATTCCAATGATAAGCAAATGCAGAACCAAAGAAGGAAGACGGAAAACAAACCTATATGGATTCATTATAAAAGGAAGATCTCATTTGAGGAATGATACTGACGTGGTAAACTTTGTAAGTATGGAATTTTCCCTTACTGACCCAAGGTTGGAACCACATAAATGGGAAAAGTATTGTGTCCTTGAAATAGGGGACATGCTCCTGCGAACTGCAGTAGGCCAGGTGTCAAGGCCCATGTTTCTGTATGTGAGAACCAATGGGACCTCCAAGATCAAGATGAAATGGGGTATGGAAATGAGACGCTGCCTTCTTCAATCTCTCCAACAGATTGAGAGCATGATTGAAGCTGAATCCTCCGTCAAAGAGAAAGACCTGACCAAAGAATTCTTTGAAAACAAATCAGAAACATGGCCAATTGGAGAATCACCTAAAGGAGTTGAGGAAGGTTCCATCGGAAAGGTGTGCAGAACCTTACTAGCAAAATCTGTATTCAACAGTCTGTATGCATCTCCACAACTCGAGGGGTTCTCAGCTGAATCGAGAAAATTGCTACTCATTGTTCAGGCGCTTAGGGATAACCTGGAACCTGGAACCTTCGATCTTGAAGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTAAGA 5 | D ATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACGAACAAATTCGCAGCGATATGCACACACTTAGAAGTCTGCTTCATGTATTCGGATTTCCACTTCATTGACGAGCGAGGCGAATCAATAATTGTAGAATCTGGCGATCCAAATGCACTGCTGAAACACCGATTTGAAATAATTGAAGGAAGAGACCGAACAATGGCCTGGACAGTGGTGAATAGTATCTGCAACACCACAGGGGTCGAGAAACCCAGATTACTCCCTGATCTGTATGACTACAAGGAAAACCGATTCATTGAAATTGGAGTGACACGGAGGGAAGTCCACATATACTACCTAGAAAAAGCCAACAAGATAAAATCCGAAAAGACACACATCCACATTTTCTCATTCACTGGAGAAGAAATGGCCACCAAAGCCGATTACACTCTTGATGAAGAGAGCAGAGCAAGAATCAAAACCAGGCTGTTCACCATAAGACAAGAAATGGCCAGCAGAGGTCTATGGGATTCCTTTCGTCAGTCCGAAAGAGGCGAAGAGACAATTGAAGAAAGATTTGAAATTACAGGAACCATGCGTAGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCAAAAGAAGTGAACGCCAGGATCGAACCATTCCTGAAGACAACACCACGTCCCCTCAGATTGCCTGATGGGCCTCCTTGCTCTCAGCGGTCGAAATTCTTGCTGATGGATGCTCTGAAGTTGAGCATTGAGGACCCAAGTCATGAAGGAGAGGGGATACCGCTATATGATGCGATCAAATGCATGAAAACATTCTTCGGCTGGAAAGAGCCCAACATTATCAAACCACATGAGAAAGGTATAAACCCCAATTATCTCTTGGCTTGGAAACAGGTACTGGCAGAACTTCAGGATATTGAGAATGAAGAGAAAATTCCAAAGACAAAGAACATGAAGAAAACAAGCCAATTGAAGTGGGCACTCGGTGAGAACATGGCACCAGAAAAAGTGGACTTTGATGATTGCAAAGATGTCAGCGATCTGAAACAGTATGACAGTGATGAGCCAGAACCCAGATCACTAGCAAGCTGGATCCAGAGTGAGTTCAACAAGGCATGCGAATTGACTGATTCAAGCTGGATAGAACTTGATGAGATAGGGGAAGATGTTGCTCCAATTGAGCACATTGCAAGCATGAGAAGGAACTATTTCACAGCGGAAGTGTCCCACTGCAGGGCCACTGAATACATAATGAAGGGAGTGTATATAAATACAGCTCTGCTCAATGCATCCTGTGCGGCCATGGATGACTCTCAGCTGATTCCAATGATAAGCAAATGCAGGACCAAAGAAGGGAGACGGAAAACAAATCTGTATGGATTCATCATAAAAGGAAGATCTCACTTGAGGAACGATACCGATGTGGTAAACTTCGTGAGTATGGAGTTTTCTCTTACCGACCCGAGGTTGGAACCACACAAGTGGGAAAAGTACTGTGTTCTTGAAATAGGGGACATGCTCCTGCGAACTGCAATAGGCCAAGTATCAAGGCCCATGTTCCTATATGTAAGAACCAATGGGACTTCCAAAATCAAGATGAAATGGGGTATGGAAATGAGACGCTGCCTTCTTCAGTCCCTTCAACAGATCGAGAGCATGACTGAGGCTGAATCTTCCGTCAAAGAGAAAGACATGACCAAAGAATTCTTTGAAAACAAATCAGAAACATGGCCAATTGGAGAGTCACCCAAGGGAGTGGAGGAAGGCTCCATTGGAAAGGTGTGCAGGACCTTACTAGCAAAATCTGTATTCAACAGCCTATATGCATCTCCACAACTCGAGGGGTTCTCAGCTGAATCGAGAAAACTGCTACTCATTGTTCAGGCGCTTAGGGATAACCTGGAACCTGGAACCTTCGATCTTGGAGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTGAGA 6 | E ATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACGAACAAATTCGCATCAATATGCACACACTTAGAAGTCTGCTTCATGTACTCTGATTTCCACTTCATTGACGAACGAGGTGAATCAACCATTATAGAATCTGGCGATCCAAATGCACTGTTGAAACACCGATTTGAAATAATCGAAGGAAGAGACCGAACAATGGCCTGGACAGTGGTGAATAGCATCTGCAACACCACGGGAGTCGAGAAACCCAAATTTCTTCCAGATCTGTATGACTACAAGGAAAACCGATTCATTGAAATTGGAGTAACGAGGAGGGAAGTCCACATATACTACCTAGAGAAAGCCAATAAAATAAAATCAGAGAAGACACACATCCACATTTTCTCATTCACTGGAGAAGAGATGGCCACCAAAGCAGATTACACTCTTGACGAAGAGAGCAGGGCAAGAATCAAAACCAGGCTGTTCACCATAAGGCAGGAAATGGCCAGCAGGGGTCTATGGGATTCCTTTCGTCAGTCCGAAAGAGGCGAAGAAACAATTGAAGAAAGATTTGAAATCTCAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCAAAAGAAGTGAACGCCAGAATCGAGCCATTTCTAAGGACAACACCACGCCCTCTCAGATTGCCTAATGGGCCTCCCTGCTCCCAGCGGTCGAAATTCTTGCTGATGGATGCTCTGAAATTAAGCATTGAGGACCCGAGCCACGAGGGGGAGGGGATACCGCTATATGATGCGATCAAATGCATGAAAACGTTCTTCGGTTGGAAAGAGCCTAACATTATCAAACCACATGAGAAGGGCATAAACCCCAATTATCTCATGACTTGGAAGCAGGTGCTAGCAGAACTTCAGGATATTGAAAATGAAGAGAAGATTCCAAAGACAAAGAACATGAAGAAAACAAGCCAATTAAAGTGGGCACTCGGTGAAAACATGGCACCGGAGAAAATAGACTTTGAAGACTGCAAAGATGTCAACGACCTGAAACAGTATGACAGTGATGAGCCAGAGCCCAGATCACTAGCATGCTGGATTCAGAATGAATTCAACAAGGCATGTGAACTGACCGATTCAAGCTGGGTAGAACTTGATGAAATAGGGGAAGATGTTGCCCCAATCGAACACATTGCAAGCATGAGACGGAACTATTTTACAGCAGAGGTGTCCCACTGCAGGGCTACTGAATACATAATGAAGGGAGTGTACATAAATACGGCTTTGCTTAATGCATCTTGTGCGGCCATGGATGATTTTCAACTGATTCCAATGATAAGCAAATGCAGAACCAAAGAAGGAAGACGGAAAACAAACCTATATGGATTCATTATAAAAGGAAGATCACATTTGAGGAATGATACCGACGTGGTAAACTTTGTAAGTATGGAATTTTCCCTTACCGACCCAAGGCTGGAACCACATAAATGGGAAAAGTATTGTGTTCTTGAAATAGGGGACATGCTCCTGCGAACTGCAGTAGGCCAAGTGTCAAGGCCCATGTTTCTGTATGTTAGAACCAATGGGACCTCCAAGATCAAGATGAAATGGGGTATGGAAATGAGACGCTGCCTTCTTCAATCTCTCCAACAGATTGAGAGCATGATTGAAGCTGAATCCTCCGTCAAAGAGAAAGACCTGACCAGAGAATTCTTTGAAAACAAATCGGAAACATGGCCAATTGGAGAATCACCTAAGGGAGTGGAGGAAGGTTCCATCGGAAAGGTGTGCAGAACCTTACTAGCAAAATCTGTATTCAACAGCCTATACGCATCTCCACAACTCGAGGGGTTCTCAGCTGAATCAAGAAAATTGCTACTCATTGTTCAGGCGCTTAGGGATAACCTGGAACCTGGAACCTTCGATCTTGAAGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTAAGA 7 | F ATGGAAGACTTTGTGCGACAGTGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACAAACAAATTCGCATCAATATGCACACACTTAGAAGTCTGCTTCATGTACTCTGATTTCCACTTCATCGACGAACGAGGCGAATCAACTATAATAGAATCTGGCGATCCAAATGCGCTGCTGAAACACCGATTTGAAATAATCGAAGGGAGAGACCGAACAATGGCCTGGACAGTGGTGAATAGTATCTGCAACACCACAGGAGCCGAAAAACCCAAATTTCTCCCGGATCTGTATGACTACAAGGAAAACCGTTTCATTGAAATTGGAGTGACGAGGAGGGAAGTCCACATATATTACCTAGAGAAAGCCAATAAAATAAAATCCGAGAAGACACACATCCATATTTTTTCATTCACTGGAGAAGAGATGGCCACCAAAGCAGATTACACTCTTGACGAAGAAAGCAGGGCAAGAATCAAAACCAGGCTGTTCACCATAAGGCAGGAAATGGCCAGCAGGGGTCTATGGGATTCCTTTCGTCAGTCTGAAAGAGGCGAAGAAACAATTGAAGAAAGATTTGAAATCACAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAGATGTCAAAAGAAGTGAACGCCAGAATTGAGCCATTTCTAAGAACAACACCACGCCCTCTCAGATTGCCTAATGGGCCTCCCTGCCCTCAGCGGTCGAAATTCTTGCTGATGGATGCTCTGAAATTAAGCATTGAGGACCCGAGCCACGAAGGGGAGGGGATACCGCTATATGATGCGATCAAATGCATGAAAACGTTCTTCGGGTGGAAAGAGCCCAACATTATCAAACCACATGAGAAAGGCATAAACCCCAATTATCTCCTGACTTGGAAGCAGGTGCTAGCAGAACTTCAGGACATTGAAAATGAAGAGAAGATTCCAAGGACAAAGAACATGAAGAAAACAAGCCAATTAAAGTGGGCACTCGGTGAGAACATGGCACCGGAGAAGGTGGACTTTGAGGATTGCAAAGATGTCAACGACTTGAAACAGTACAACAGTGATGAGCCAGAGCCCAGATCACTAGCATGTTGGATCCAGAATGAATTCAACAAGGCGTGTGAACTGACTGACTCAAGCTGGGTAGAACTTGATGAAATAGGGGAAGATGTTGCCCCAATCGAACACATTGCAAGCATGAGACGGAACTATTTTACAGCAGAGGTGTCTCACTGCAGGGCTACTGAATATATAATGAAGGGAGTGTACATAAATACAGCTTTGCTCAATGCATCTTGTGCAGCCATGGATGACTTTCAGCTGATTCCAATGATAAGTAAATGTAGAACCAAAGAAGGAAGACGGAAAACAAACCTGTATGGATTCATTATAAAAGGAAGATCTCATTTGAGGAATGATACCGACGTGGTAAACTTTGTAAGTATGGAATTTTCCCTTACCGACCCAAGGTTGGAACCACATAAATGGGAAAAGTATTGTGTTCTTGAAATAGGGGACATGATCCTGCGAACTGCAGTAGGCCAAGTGTCAAGACCCATGTTTCTGTATGTGAGAACCAATGGGACCTCCAAGATCAAGATGAAATGGGGTATGGAAATGAGACGCTGCCTTCTTCAATCTCTCCAACAGATTGAGAGCATGATTGAAGCTGAATCCTCCGTCAAAGAGAAAGACCTGACCAAAGAATTCTTTGAAAACAAATCAGAAACATGGCCAATTGGAGAGTCACCTAAAGGAGTGGAGGAAGGTTCCATCGGGAAGGTGTGCAGAACCTTACTAGCAAAATCTGTATTCAACAGCCTATATGCATCTCCGCAACTCGAGGGGTTCTCAGCTGAATCGAGAAAACTGCTACTCATTGTTCAGGCGCTTAGGGATAACCTGGAACCTGGAACCTTTGATCTTGAAGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTAAGA 8 | G ATGGTAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAGTATGGGGAAGATCCGAAAATCGAAACGAACAAATTCTCATCAATATGCACACACTTAGAAGTCTGCTTCATGTACTCTGATTTCCATTTCATTGACGAACGAGGCGAATCAACTATTATAGAATCTGGCGATCCAAATGCGTTGTTGAAACACCGATTTGAAATAATTGAAGGGAGAGACCGAACAATGGCCTGGACAGTGGTGAATAGTATCTGCAACACCACGAGAGTCCAGAAACCCAAATTTCTTCCGGATCTGTATGACTACCAGGAGAACCGATTCATTGAAATTGGAGTAACGAGGAGGGAAGTCCACATATACTACCTAGAGAAAGCCAATAAAATAAAATCCGATAATACACACATCCACATTTTCTCATTCACTGGAGAAGAGATGGCCACCAAAGCAGATTACACTCTTGACGAAGAGAGTAGGGCAAGAATCAAAACCAGGCTGTTCACCATAAGGCAGGAAATGGCCAGCAGGGGTCTATGGGATTCCTTTCGTCAGTCTGAAAGAGGCGAAGAAACAATTGAAGAAAGATTTGAAATCACAGGAACCATGCGCAGGCTTGCCGACCAAAGCCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCAAAAGAAGTGAACGCCAGAATCGAACCATTTCTAAGGACAACACCACGCCCCCTCAGATTGCCTAATGGCCCTCCCTGCTCTCAGCGGTCGAAATTCTTGCTGATGGATGCTCTGAAATTAAGCATTGAGGACCCTAGCTACGAAGGGGAGGGAATACCGCTATATGATGCGATCAAATGCATGAAAACATTCTTCGGATGGAAAGAGCCCAACATTATCAAACCACATGAGAAAGGCATAAACCCCAATTATCTCCTGACTTGGAAGCAGGTGCTGGCAGAACTTCAGGACATTGAAAATGAAGAGAAGATTCCAAAGACAAAGAACATGAAGAAAACAAGCCAATTAAAGTGGGCACTCGGTGAGAACATGGCACCGGAAAAGGTGGACTTTGAAGATTGCAAAGATGTCAACGACCTGAAACAGTACGACAGTGATGAACCGGAGCCCAGATCACTAGCATGTTGGATCCAGAATGAATTCAACAAGGCATGTGAGTTGACTGATTCAAGCTGGATAGAACTTGATGAAATAGGAGAAGATGTTGCCCCAATCGAACACATTGCAAGCATGAGAAGGAACTATTTTACAGCGGAGGTGTCCCACTGCAGGGCTACTGAATACATAATGAAGGGAGTGTACATAAATACAGCTCTGCTCAATGCATCTTGTGCGGCCATGGATGACTTTCAACTGATTCCAATTATAAGCAAATGTAGAACCAAAGAAGGAAGACGGAAAACAAACCTATATGGATTCATTATAAAAGGAAGATCTCATTTGAGGAATGATACCGACGTGGTAAACTTTGTAAGTATGGAATTTTCCCTTACCGACCCGAGGTTGGAACCACATAAATGGGAAAAGTACTGTGTTCTTGAAATAGGGGACATGCTCCTGCGAACTGCAGTAGGCCAAGTGTCGAGGCCCATGTTCCTTTATGTGAGAACCAATGGGACTTCCAAGATCAAGATGAAATGGGGTATGGAAATGAGACGCTGCCTTCTTCAATCTCTCCAACAGATTGAGAGCATGATTGAAGCTGAATCCTCCGTCAAAGAGAAAGACCTGACCAAAGAATTCTTTGAAAACAAATCAGAAACATGGCCAATTGGAGAGTCACCCAAGGGAGTGGAGGAAGGCTCCATCGGAAAGGTGTGCAGAACCTTACTAGCAAAATCTGTATTCAACAGCCTATATGCATCACCACAACTCGAGGGGTTCTCAGCTGAATCGAGAAAACTGCTACTCATTGTTCAGGCGCTTAGGGATAACCTGGAACCTGGAACCTTCGATCTTGGAGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTT------------------------------------------------ 9 | H ATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACGAACAAATTCGCATCAGTATGCACACACTTAGAAGTATGCTTCATGTACTCTGATTTCCACTTCATTGACGAACGAGGCGAATCAACTATTATAGAATCTGGCGATCCAAATGCGTTGTTGAAACACCGATTTGAAATAATCGAAGGGAGAGACCGAACAATGGCCTGGACAGTGGTGAATAGTATCTGCAACACCACGGGAGTCGAGAAACCCAAATTTCTTCCGGATCTGTATGACTACAAGGAAAACCGATTCATTGAAATTGGAGTAACGAGGAGGGAAGTCCACATATACTACCTAGAGAAAGCCAATAAAATAAAATCCGAGAAGACACACATCCACATTTTCTCATTCACTGGAGAAGAGATGGCCACCAAAGCAGATTACACTCTTGACGAAGAAAGCAGGGCAAGAATCAAAACCAGGCTGTTCACCATAAGGCAGGAAATGGCCAGCAGGGGTCTATGGGATTCCTTTCGTCAGTCCGAAAGAGGCGAAGAAACAATTGAAGAAAGATTTGAAATCACAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCAAAAGAAGTGAACGCCAGAATCGATCCATTTCTAAGGACAACCCCACGCCCTCTCAGATTGCCTAATGGGCCTCCCTGCTCTCAGCGGTCGAAATTCTTGCTGATGGATGCTCTGAAATTAAGCATTGAGGACCCGAGCCACGAAGGGGAGGGGATACCGCTATATGATGCGATCAAATGCATGAAAACGTTCTTCGGGTGGAAAGAGCCCAACATTATCAAACCACATGAGAAAGGCATAAACCCCAATTACCTCCTGACTTGGAAGCAAGTGCTAGCAGAACTTCAGGACATTGAAAATGAAGAGAAGATTCCAAAGACAAAGAACATGAAGAAAACAAGCCAATTAAAGTGGGCACTCGGTGAGAACATGGCACCGGAGAAGGTGGACTTTGAAGATTGCAAAGATGTCAACGACCTGAAACAGTACGACAGTGATGAGCCAGAGCCCAGATCACTAGCATGTTGGATCCAGAATGAGTTCAACAAGGCATGTGAATTGACTGATTCAAGCTGGGTAGAACTTGATGAAATAGGGGAAGATGTTGCCCCAATCGAACACATTGCAAGCATGAGGCGGAACTATTTTACAGCAGAGGTTTCCCACTGCAGGGCTACTGAATACATAATGAAGGGAGTGTACATAAATACAGCTTTGCTCAATGCATCTTGTGCGGCCATGGATGACTTTCAACTGATTCCAATGATAAGCAAATGCAGAACCAAAGAAGGAAGACGGAAAACAAACCTATATGGATTCATTATAAAAGGAAGATCACATTTGAGGAATGATACCGACGTGGTAAACTTTGTAAGTATGGAATTTTCCCTTACCGACCCAAGGTTGGAACCACATAAATGGGAAAAGTATTGTGTTCTTGAAATAGGAGACATGCTCCTGCGAACTGCAGTAGGCCAAGTGTCAAGGCCCATGTTTCTGTATGTGAGAACCAATGGGATCTCCAAGATCAAGATGAAATGGGGTATGGAAATGAGACGCTGCCTTCTTCAATCTCTCCAACAGATTGAGAGCATGATTGAAGCTGAATCCTCAGTCAAAGAGAAAGACCTGACCAAAGAATTCTTTGAAAACAAATCAGAAACATGGCCAATTGGAGAATCACCTAAGGGAGTGGAGGAAGGTTCCATCGGAAAGGTGTGCAGAACCTTACTAGCAAAATCTGTATTCAACAGCCTATATGCATCTCCACAACTCGAGGGGTTCTCAGCTGAATCGAGAAAACTGCTACTCATTGTTCAGGCGCTTAGGGATAACCTGGAACCTGGAACCTTCGATCTTGAAGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTTTTACTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTAAGA 10 | I ATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACAAACAAATTCGCATCAATATGCACACACTTAGAAGTCTGCTTCATGTACTCTGATTTCCACTTCATCGACGAACGAGGCGAATCAACTATTATAGAATCTGGCGATCCAAATGCGCTGCTGAAACACCGATTTGAAATAATCGAAGGGAGAGACCGAACAATGGCCTGGACAGTGGTGAATAGTATCTGCAACACCACGGGAGTCGAAAAACCCAAATTTCTCCCGGATCTGTATGACTACAAGGAAAACCGATTCATTGAAATTGGAGTGACGAGGAGGGAAGTCCACATATATTACCTAGAGAAAGCCAATAAAATAAAATCCGAGAAGACACACATCCACATTTTCTCATTCACTGGAGAAGAGATGGCCACCAAAGCAGATTACACTCTTGACGAAGAAAGCAGGGCAAGAATCAAAACCAGGCTGTTCACCATAAGGCAGGAAATGGCCAGCAGGGGTCTATGGGATTCCTTTCGTCAGTCTGAAAGAGGCGAAGAAACAATTGAAGAAAGATTTGAAATCACAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCAAAAGAAGTGAACGCCAGAATCGAGCCATTTCTAAGGACAACACCACGCCCTCTCAGATTGCCTAATGGGCCTCCCTGCTCTCAGCGGTCGAAATTCTTGCTGATGGATGCTCTGAAATTAAGCATTGAGGACCCGAGCCATGAGGGGGAGGGGATACCGCTATATGATGCGATCAAATGCATGAAAACGTTCTTCGGGTGGAAAGAGCCCAACATTATCAAACCACATGAGAAAGGCATAAACCCCAATTATCTCCTGACTTGGAAGCAGGTGCTAGCAGAACTTCAGGACATTGAAAATGAAGAGAAGATTCCAAAGACAAAGAACATGAAAAAAACAAGCCAATTAAAGTGGGCACTCGGTGAAAACATGGCACCGGAGAAGGTGGACTTTGAGGATTGCAAAGATGTCAACGACCTGAAACAGTACGACAGTGATGAGCCAGAGCCCAGATCACTAGCATGTTGGATCCAGAATGAATTCAACAAGGCATGTGAATTGACTGATTCAAGCTGGGTAGAACTTGATGAAATAGGGGAAGATGTTGCTCCAATCGAACACATTGCAAGCATGAGACGGAACTATTTTACAGCAGAGGTGTCCCACTGCAGGGCTACTGAATATATAATGAAGGGAGTGTACATAAATACAGCTTTGCTCAATGCATCTTGTGCAGCCATGGATGACTTTCAACTGATTCCAATGATAAGTAAATGCAGAACCAAAGAAGGAAGACGGAAAACAAACCTATATGGATTCATTATAAAAGGAAGATCTCACTTGAGGAATGATACCGACGTGGTAAACTTTGTAAGTATGGAATTTTCCCTTACCGACCCAAGGTTGGAACCACATAAATGGGAAAAGTATTGTGTTCTTGAAATAGGGGACATGCTCCTGCGAACTGCAGTAGGCCAAGTGTCAAGACCCATGTTTCTGTATGTGAGAACCAATGGGACCTCCAAGATCAAGATGAAATGGGGTATGGAAATGAGACGCTGCCTTCTTCAATCTCTCCAACAGATTGAGAGCATGATTGAAGCTGAATCCTCCGTCAAAGAGAAAGACCTGACCAAAGAATTCTTTGAAAACAAATCAGAAACATGGCCAATTGGAGAATCACCTAAAGGAGTGGAGGAAGGTTCCATCGGGAAGGTGTGCAGAACCTTACTAGCAAAATCTGTATTCAACAGCCTATATGCATCTCCGCAACTCGAGGGGTTCTCAGCTGAATCGAGAAAACTGCTACTCATTGTTCAGGCGCTTAGGGATAACCTGGAACCTGGAACCTTCGATCTTGAAGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTAAGA 11 | J ATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACGAACAAATTCGCAGCAATATGCACACACTTAGAAGTCTGCTTCATGTACTCTGATTTCCACTTCATTGACGAACGAGGCGAATCAACAATTATAGAATCTGGCGATCCAAATGCGTTATTGAAACACCGATTTGAAATAATCGAAGGGAGAGACCGAACAATGGCCTGGACAGTGGTGAATAGTATCTGCAACACCACGAGAGTCGAGAAACCCAAATTTCTTCCGGATCTGTATGACTACAAGGAAAACCGATTCATTGAAATTGGAGTGACGCGGAGGGAAGTCCACATATACTACCTAGAAAAAGCCAACAAGATAAAATCCGAGAAGACACACATCCACATTTTCTCATTCACTGGAGAAGAAATGGCCACCAAAGCAGATTACACTCTTGACGAAGAGAGCAGGGCAAGAATCAAAACCAGGCTGTTCACCATAAGGCAGGAAATGGCCAGCAGGGGTCTATGGGATTCCTTTCGTCAGTCCGAGAGAGGCGAAGAGACAATTGAAGAAAGATTTGAGATCACAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCAAAAGAAGTGAACGCCAGAATCGAGCCATTTCTCAGGACAACACCACGTCCCCTCAGATTGCCTAATGGGCCTCCCTGCTCTCAGCGGTCGAAATTCTTGCTGATGGATGCTCTGAAATTAAGCATTGAGGACCCGAGCCATGAAGGGGAGGGGATACCGCTATATGATGCGATCAAATGCATGAAAACATTCTTCGGATGGAAAGAGCCCAACATTATCAAACCACATGAGAAAGGCATAAACCCTAATTATCTCCTGGCTTGGAAGCAGGTACTGGCAGAACTTCAGGACATTGAAAATGAAGAGAAGATCCCAAAGACAAAGAACATGAAGAAAACAAGCCAATTGAAGTGGGCACTCGGTGAGAACATGGCACCGGAAAAAGTGGACTTTGAAGATTGCAAAGATGTCAGCGATCTGAAACAGTATGACAGTGATGAGCCAGAGCCCAGATCACTAGCATGTTGGATCCAGAATGAATTCAACAAGGCATGTGAATTGACTGATTCAAGCTGGATAGAACTTGATGAAATAGGGGAAGATGTTGCCCCAATTGAGCACATTGCAAGCATGAGAAGGAACTATTTCACAGCGGAGGTGTCCCACTGCAGGGCTACTGAATACATAATGAAGGGAGTGTACATAAATACAGCTTTGCTCAATGCATCTTGTGCGGCCATGGATGACTTTCAACTGATTCCAATGATAAGCAAATGCAGAACCAAAGAAGGAAGACGGAAAACAAACCTATATGGATTCATTATAAAAGGAAGATCTCATTTGAGGAATGATACCGACGTGGTAAATTTTGTAAGTATGGAGTTTTCCCTTACCGACCCGAGATTGGAACCACATAAATGGGAAAAGTATTGTGTTCTTGAAATAGGGGACATGCTCCTGCGAACTGCAGTAGGCCAAGTGTCAAGGCCCATGTTCCTGTATGTGAGAACCAATGGGACTTCCAAGATCAAGATGAAATGGGGTATGGAAATGAGACGCTGCCTTCTTCAATCTCTCCAACAGATTGAGAGCATGATTGAAGCTGAATCTTCCGTCAAAGAGAAAGACTTGACCAAAGAATTCTTTGAAAACAAGTCAGAAACATGGCCAATTGGAGAGTCACCCAAGGGAGTGGAGGAAGGCTCCATCGGAAAGGTGTGCAGAACCTTACTAGCAAAATCTGTATTCAACAGTCTATATGCATCTCCACAACTCGAGGGGTTCTCAGCAGAATCGAGAAAACTGCTACTCATTGTTCAGGCGCTTAGGGATAACCTGGAACCTGGAACTTTCGATCTTGGGGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTGAGA 12 | K ATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATTGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACAAACAAATTTGCCGCAATATGCACACACTTAGAAGTCTGTTTCATGTATTCGGATTTCCACTTTATTGATGAACGAGGCGAATCAATAATTGTAGAATCTGGCGATCCGAATGCATTATTGAAACACCGATTTGAGATAATTGAAGGGAGAGACCGAACAATGGCCTGGACAGTGGTGAATAGCATTTGCAACACCACAGGAGTCGATAAGCCTAAATTCCTACCTGATTTGTATGATTATAAAGAAAACCGATTCATTGAAATTGGAGTGACGCGAAGGGAAGTTCACATATACTATCTAGAAAAAGCCAACAAGATAAAGTCAGAGAAGACACACATTCACATATTCTCATTCACTGGAGAGGAAATGGCCACCAAAGCGGACTACACCCTTGATGAAGAGAGCAGGGCAAGAATAAAAACCAGGCTATTCACCATAAGACAAGAAATGGCCAGTAGGGGTCTATGGGATTCCTTTCGTCAGTCCGAGAGAGGCGAAGAGACAATTGAAGAAAGATTTGAAATCACAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCAAAAGAAGTGAATGCCAGAATTGAGCCTTTTCTGAAGACAACACCACGCCCTCTCAGATTGCCTGATGGGCCTCCCTGCTCTCAGCGGTCAAAGTTCTTGCTGATGGATGCCCTTAAATTAAGCATCGAAGACCCGAGTCATGAGGGGGAAGGTATACCGCTGTATGATGCAATCAAATGCATGAAGACATTTTTTGGCTGGAAAGAGCCCAACATCGTAAAACCACATGAAAAAGGCATAAATCCCAATTACCTCCTGGCTTGGAAGCAGGTGCTGGCAGAACTCCAAGATATTGAAAATGAGGAGAAAATCCCAAAAACAAAGAACATGAAGAAAACAAGCCAATTGAAGTGGGCACTTGGTGAGAATATGGCACCAGAAAAAGTGGACTTTGAGGACTGCAAAGATATTAGCGATCTAAGACAGTATGACAGTGACGAACCGGAATCTAGATCGCTAGCAAGCTGGGTCCAGAGTGAATTTAACAAGGCATGCGAACTGACAGATTCGAGTTGGATTGAACTTGATGAAATAGGGGAAGACATTGCTCCAATTGAACACATTGCGAGTATGAGGAGGAACTATTTCACAGCGGAAGTATCCCATTGCAGGGCTACTGAATACATAATGAAGGGAGTGTACATAAACACAGCCCTATTGAATGCATCCTGTGCAGCCATGGATGACTTCCAACTGATTCCAATGATAAGCAAGTGCAGAACCAAAGAAGGAAGACGGAAGACAAATCTGTATGGATTCATCATAAAAGGAAGATCCCATTTGAGGAATGACACCGATGTGGTAAACTTTGTGAGCATGGAATTCTCTCTCACTGACCCGAGGCTGGAGCCACACAAATGGGAAAAGTACTGCGTTCTTGAGATAGGAGATATGCTCCTACGGACTGCAATAGGTCAAGTGTCAAGGCCCATGTTCCTGTATGTGAGAACCAATGGGACTTCCAAGATCAAAATGAAATGGGGCATGGAGATGAGGCGATGCCTTCTTCAGTCCCTTCAACAAATTGAGAGCATGATTGAGGCCGAGTCCTCTGTCAAAGAGAAGGACATGACCAAGGAATTCTTTGAAAACAAATCAGAAACATGGCCAATTGGAGAATCCCCCAAAGGAGTGGAAGAAGGCTCCATTGGGAAGGTGTGCAGAACATTGTTAGCAAAGTCTGTGTTCAACAGCCTATATGCATCTCCACAACTCGAGGGGTTTTCAGCTGAATCAAGAAAATTGCTTCTCATTGTTCAGGCACTTAGGGACAACCTGGAACCTGGAACCTTCGATCTTGGGGGGCTATATGAAGCAATTGAGGAGTGCCTGATTAACGATCCCTGGGTTTTGCTTAATGCGTCTTGGTTCAACTCCTTCCTCACACATGCATTGAAA 13 | L ATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACGAACAAATTCGCAGCAATATGCACACACTTAGAAGTCTGCTTCATGTACTCGGATTTCCACTTCATTGACGAACGAGGCGAATCAACAATTATAGAATCTGGCGATCCAAATGCGTTATTGAAACACCGATTTGAAATAATCGAAGGGAGAGACCGAACAATGGCCTGGACAGTGGTGAATAGTATCTGCAACACCACGGGAGTCGAGAAACCCAAATTTCTTCCGGATCTGTATGACTACAAGGAAAACCGATTCATTGAAATTGGAGTGACGCGGAGGGAAGTCCACATATACTACCTAGAAAAAGCCAACAAGATAAAATCCGAGAAGACACACATCCACATTTTCTCATTCACTGGAGAAGAAATGGCCACCAAAGCAGATTACACTCTTGATGAAGAGAGCAGGGCAAGAATCAAAACCAGGCTGTTCACCATAAGACAGGAAATGGCCAGCAGGGGTCTATGGGATTCCTTTCGTCAGTCCGAGAGAGGCGAAGAGACAATTGAAGAAAGATTTGAAATCACAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCAAAAGAAGTGAACGCCAGAATTGAGCCATTTCTAAGGACAACACCACGTCCCCTCAGATTGCCTAATGGGCCTCCCTGCTCTCAGCGGTCGAAATTCTTGCTTATGGATGCTCTGAAATTAAGCATTGAGGACCCGAGCCATGAAGGGGAGGGGATACCGCTATATGATGCGATCAAATGCATGAAAACATTCTTCGGATGGAAAGAGCCCAACATTATCAAACCACATGAGAAAGGCATAAACCCCAATTATCTCCTGGCTTGGAAGCAAGTACTGGCAGAACTTCAGGACATTGAAAATGAAGAGAAGATCCCAAAGACAAAGAACATGAAGAAAACAAGCCAATTGAAGTGGGCACTCGGTGAGAACATGGCACCAGAAAAAGTGGACTTTGAAGATTGCAAAGATGTCAGCGATCTGAAACAGTATGACAGTGATGAGCCAGAGCCCAGATCACTAGCATGTTGGATCCAGAATGAATTCAACAAGGCATGTGAATTGACTGATTCAAGCTGGATAGAACTTGATGAAATAGGGGAAGATGTTGCCCCAATTGAGCACATTGCAAGCATGAGAAGGAACTATTTCACAGCGGAAGTGTCCCACTGCAGGGCTACTGAATACATAATGAAGGGAGTGTACATAAATACAGCTTTGCTCAATGCATCTTGTGCGGCCATGGATGACTTTCAACTGATTCCAATGATAAGCAAATGCAGAACCAAAGAAGGAAGACGGAAAACAAATCTATATGGATTCATTATAAAAGGAAGATCTCATTTGAGGAATGATACCGACGTGGTAAATTTTGTGAGTATGGAGTTTTCCCTTACCGACCCGAGGCTGGAACCACATAAATGGGAAAAGTACTGTGTTCTTGAAATAGGGGACATGCTCCTGCGAACTGCAGTAGGCCAAGTGTCAAGGCCCATGTTCCTGTATGTGAGAACCAATGGGACTTCCAAAATCAAGATGAAATGGGGTATGGAAATGAGACGCTGCCTTCTTCAATCTCTCCAACAGATTGAGAGCATGATTGAAGCTGAATCTTCCGTCAAAGAGAAAGACTTGACCAAAGAATTCTTTGAAAACAAATCAGAAACATGGCCAATTGGAGAGTCACCCAAGGGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 14 | M ATGGAAGACTTTGTGCGACAGTGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGACAATGAAAGAATATGGGGAAGATCCAAAAATCGAAACAAACAAATTCGCATCAATATGCACACACTTAGAAGTCTGCTTCATGTACTCTGATTTCCACTTCATCGACGAACGTGGCGAATCAACTATAATAGAATCTGGCGATCCAAATGCGCTGCTGAAACACCGATTTGAAATAATCGAAGGGAGAGACCGAACAATGGCCTGGACAGTAGTGAATAGTATCTGCAACACCACAGGAGCCGAAAAACCCAAATTTCTCCCGGATCTGTATGACTACAAGGAAAACCGTTTCATTGAAATTGGAGTGACGAGGAGGGAAGTCCACATATATTACCTAGAGAAAGCCAATAAAATAAAATCCGAGAAGACACACATCCATATTTTTTCATTCACTGGAGAAGAGATGGCCACCAAAGCAGATTACACTCTTGACGAAGAAAGCAGGGCAAGAATCAAAACCAGGCTGTTCACCATAAGGCAGGAAATGGCCAGCAGGGGTCTATGGGATTCCTTTCGTCAGTCTGAAAGAGGCGAAGAAACAATTGAAGAAAGATTTGAAATCACAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAGATGTCAAAAGAAGTGAACGCCAGAATTGAGCCATTTCTAAGAACAACACCACGCCCTCTCAGATTGCCTAATGGGCCTCCCTGCTCTCAGCGGTCGAAATTCTTGCTGATGGATGCTCTGAAATTAAGCATTGAGGACCCGAGCCACGAAGGGGAGGGGATACCGCTATATGATGCGATCAAATGCATGAAAACGTTCTTCGGGTGGAAAGAGCCCAACATTATCAAACCACATGAGAAAGGCATAAACCCCAATTATCTCCTGACTTGGAAGCAGGTGCTAGCAGAACTTCAGGACATTGAAAATGAAGAGAAGATTCCAAGGACAAAGAACATGAAGAAAACAAGCCAATTAAAGTGGGCACTCGGTGAGAACATGGCACCGGAGAAGGTGGACTTTGAGGATTGCAAAGATGTCAACGACTTGAAACAGTACAACAGTGATGAGCCAGAGCCCAGATCACTAGCATGTTGGATCCAGAATGAATTCAACAAGGCGTGTGAACTGACTGACTCAAGCTGGGTAGAACTTGATGAAATAGGGGAAGATGTTGCCCCAATCGAACACATTGCAAGCATGAGACGGAACTATTTTACAGCAGAGGTGTCCCACTGCAGGGCTACTGAATATATAATGAAGGGAGTGTACATAAATACAGCTTTGCTCAATGCATCTTGTGCAGCCATGGATGACTTTCAACTGATTCCAATGATAAGTAAATGTAGAACCAAAGAAGGAAGACGGAAAACAAACCTGTATGGATTCATTATAAAAGGAAGATCTCATTTGAGGAATGATACCGATGTGGTAAACTTTGTAAGTATGGAATTTTCCCTTACCGACCCAAGGTTGGAACCACATAAATGGGAAAAGTATTGTGTTCTTGAAATAGGGGACATGCTCCTGCGAACTGCAGTAGGCCAAGTGTCAAGACCTATGTTTCTGTATGTGAGAACCAATGGGACCTCCAAGATCAAGATGAAATGGGGTATGGAAATGAGACGCTGCCTTCTTCAATCTCTCCAACAGATTGAGAGCATGATTGAAGCTGAATCCTCTGTCAAAGAGAAAGACCTGACCAAAGAATTCTTTGAAAACAAATCAGAAACATGGCCAATTGGAGAGTCACCTAAAGGAGTGGAGGAAGGTTCCATCGGGAAGGTGTGCAGAACCTTACTAGCAAAATCTGTATTCAACAGCCTATATGCATCTCCGCAACTCGAGGGGTTCTCAGCTGAATCGAGAAAACTGCTACTCATTGTTCAGGCGCTTAGGGATAACCTGGAACCTGGAACCTTTGATCTTGAAGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTAAGA 15 | N ATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATTGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACGAACAAATTTGCCGCAATATGCACACACTTGGAAGTCTGTTTCATGTATTCGGATTTCCACTTTATTGATGAACGGGGCGAATCAATAATTGTAGAATCTGGCGATCCGAACGCATTATTGAAACACCGATTTGAGATAATTGAAGGAAGAGACCGAACAATGGCCTGGACAGTGGTGAATAGTATCTGCAACACCACAGGGGTCGACAAGCCTAAATTCCTCCCAGATTTGTATGACTACAAAGAGAACCGATTCATTGAAATTGGAGTGACACGAAGGGAAGTTCACATATACTATCTAGAAAAAGCTAACAAGATAAAATCGGAGAAGACACACATTCACATATTCTCATTCACTGGAGAGGAAATGGCCACCAAAGCAGACTATACTCTTGATGAAGAGAGCAGAGCAAGAATCAAAACCAGGCTGTTCACCATAAGGCAAGAAATGGCCAGTAGGGGTCTATGGGATTCCTTTCGTCAGTCCGAGAGAGGCGAAGAGACAATTGAAGAAAGATTTGAAATCACAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCAAAAGAAGTGAACGCCAGAATTGAGCCATTTCTGAAGACAACACCACGCCCTCTTAGATTACCTGATGGGCCTCCCTGCTCTCAGCGGTCGAAGTTCTTGCTGATGGATGCTCTCAAATTAAGCATCGAAGACCCGAGCCATGAGGGGGAAGGTATACCACTATATGATGCAATCAAATGCATGAAGACATTTTTCGGCTGGAAAGAGCCCAACATCGTAAAACCACATGAAAAAGGCATAAACCCCAATTACCTCCTGGCTTGGAAGCAGGTGCTGGCAGAACTCCAAGATATTGAAAATGAAGAGAAAATCCCAAAAACAAAGAACATGAAGAAAACAAGCCAATTAAAATGGGCACTTGGTGAGAATATGGCACCAGAGAAAGTAGACTTTGAGGACTGCAAAGATGTTAGCGATCTAAGACAGTATGACAGTGATGAACCAGAGTCTAGATCGCTAGCAAGCTGGATCCAGAGCGAATTCAACAAGGCATGCGAATTGACAGATTCGAGTTGGATTGAACTTGATGAAATAGGGGAGGACGTTGCTCCAATTGAGCACATTGCGAGTATGAGAAGAAACTATTTCACAGCGGAAGTATCCCATTGCAGGGCTACTGAATACATAATGAAGGGAGTGTACATAAACACAGCCCTGTTGAATGCATCCTGTGCAGCCATGGATGACTTCCAACTGATTCCAATGATAAGCAAGTGCAGGACCAAAGAAGGGAGACGGAAGACAAATCTGTATGGATTCATTATAAAGGGGAGATCCCATTTGAGGAATGACACTGATGTGGTAAACTTTGTGAGCATGGAATTCTCTCTTACTGACCCGAGGCTGGAGCCATACAAGTGGGAAAAGTACTGTGTCCTCGAGATAGGAGACATGCTACTACGGACTGCAATAGGCCAAGTATCAAGGCCCATGTTCCTGTATGTGAGAACCAATGGGACTTCCAAGATTAAGATGAAATGGGGCATGGAGATGAGGCGATGCCTTCTTCAATCCCTTCAACAAATTGAAAGCATGATTGAGGCCGAGTCTTCTGTCAAAGAGAAGGACATGACCAAAGAATTCTTTGAAAACAAATCAGAAACATGGCCAATTGGAGAATCCCCCAAAGGGGTGGAGGAAGGCTCCATTGGGAAGGTGTGCAGAACATTACTAGCAAAATCTGTGTTCAACAGCCTATATGCATCTCCACAACTCGAGGGATTTTCAGCTGAATCAAGAAAATTGCTTCTCATTGTTCAGGCACTTAGGGACAACCTTGAACCTGGGACCTTTGATCTTGGGGGGCTATATGAAGCAATTGAGGAGTGCCTGATTAACGATCCCTGGGTTTTGCTTAATGCGTCTTGGTTCAACTCCTTCCTCACACATGCACTGAAA 16 | O ATGGAAGACTTTGTGAGACAATGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACAAACAAATTCGCATCAATATGCACACACTTAGAAGTCTGCTTCATGTACTCTGATTTCCACTTCATTGACGAAAGAGGCGAATCAACCATTATAGAATCTGGCGATCCAAATGCACTGTTGAAACACCGATTTGAAATAATCGAAGGGAGAGACCGAACAATGGCCTGGACAGTGGTGAATAGCATCTGCCACACCACGGGAGTCGAGAAACCCAAATTTCTTCCGGATCTGTATGACTACAAGGAAAGCCGATTCATTGAAATTGGAGTAACGAGGAGGGAAGTCCACATATACTACCTAGAGAAAGCCAATAAAATAAAATCAGAGAAGACACACATCCACATTTTCTCATTCACTGGAGAAGAGATGGCCACCAAAGCAGATTACACTCTTGACGAAGAGAGCAGGGCAAGAATCAAAACCAGGCTGTTCACTATCAGACAGGAAATGGCCAGCAGGGGTCTATGGGATTCCTTTCGTCAGTCCGAAAGAGGCGAAGAAACAATTGAAGAAAGATTTGAAATCACAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCAAAAGAAGTGAACGCCAGAATCGAGCCATTTCTAAGGACTACACCACGCCCTCTCAGATTGCCTAATGGGCCACCCTGCTCTCAGCGGTCGAAATTCTTGCTGATGGATGCTCTGAAATTAAGCATTGAAGACCCGAGCCACGAAGGGGAGGGGATACCGCTATATGATGCGATCAAATGCATGAAAACGTTCTTCGGGTGGAAAGAGCCCATCATTATCAAACCACATGAGAAAGGCATAAACCCCAATTATCTTATGACTTGGAAGCAGGTGCTAGCAGAACTTCAGGACATTGAAAATGAAGAGAAGATTCCAAAGACAAAAAACATGAAGAAAACAGGCCAATTAAAGTGGGCACTTGGTGAAAACATGGCTCCGGAGAAAGTAGACTTTGAGGACTGCAAAGATGTCAATGACCTGAAACAGTATGATAGTGATGAGCCAGAGCCCAGATCACTAGCATGTTGGATTCAGAATGAATTCAACAAAGCATGTGAATTGACCGATTCAAGCTGGGTAGAACTTGATGAAATAGGGGAAGATGTTGCCCCAATCGAACACATTGCAAGCATGAGACGGAACTATTTTACAGCAGAGGTGTCCCACTGCAGGGCTACTGAATACATAATGAAGGGAGTGTACATAAATACAGCTTTGCTCAACGCATCTTGTGCGGCTATGGATGATTTTCAACTGATTCCAATGATAAGCAAATGCAGAACAAAAGAAGGAAGACGGAAAACAAACCTATATGGATTCATTATAAAAGGAAGATCTCATTTGAGGAATGATACCGACGTGGTAAACTTTGTAAGTATGGAATTTTCCCTTACCGACCCAAGGTTGGAACCACATAAATGGGAAAAGTATTGTGTTCTTGAAATAGGGGATATGCTCCTGCGAACTGCAGTAGGCCAAGTGTCAAGGCCCATGTTTCTGTATGTTAGAACCAATGGGACCTCCAAGATCAAGATGAAATGGGGTATGGAAATGAGACGCTGCCTTCTTCAATCCCTCCAACAGATTGAGAGCATGATTGAAGCTGAATCCTCCGTCAAAGAGAAAGACCTGACCAAAGAATTCTTTGAAAACAAATCAGAGACATGGCCAATTGGAGAATCACCTAAGGGAGTGGAGGAAGGTTCCATCGGAAAGGTGTGCAGAACCTTACTAGCAAAATCGGTATTCAACAGCCTATATGCATCTCCACAACTAGAGGGGTTCTCAGCTGAGTCGAGAAAATTGCTACTCATTGTTCAGGCGCTTAGGGACAACCTGGAACCTGGAACCTTCGATCTTGAAGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTAAGA 17 | 1 18 | (K,N,(D,(L,(J,(G,((C,(E,O)),(H,(I,(B,(A,(F,M))))))))))); 19 | -------------------------------------------------------------------------------- /global.R: -------------------------------------------------------------------------------- 1 | #=============================================================================== 2 | # This is the global.R script for the subset tree shiny app 3 | # 4 | # Tyler Bradley 5 | #=============================================================================== 6 | 7 | if (!"treeio" %in% installed.packages()) { 8 | if (!"devtools" %in% installed.packages()) install.packages("devtools") 9 | devtools::install_github("GuangchuangYu/treeio") 10 | } else if (packageVersion("treeio") < "1.5.1.2") { 11 | if (!"devtools" %in% installed.packages()) install.packages("devtools") 12 | devtools::install_github("GuangchuangYu/treeio") 13 | } 14 | 15 | if (!"purrr" %in% installed.packages()) install.packages("purrr") 16 | 17 | 18 | purrr::walk(c("shiny", "shinyjs", "tidyverse", 19 | "ggtree", "tidytree", "shinyalert"), ~{ 20 | if (!.x %in% installed.packages()) install.packages(.x) 21 | }) 22 | 23 | 24 | suppressWarnings({ 25 | suppressPackageStartupMessages({ 26 | library(shiny) 27 | library(shinyjs) 28 | library(tidyverse) 29 | library(ggtree) 30 | library(tidytree) 31 | library(treeio) 32 | library(shinyalert) 33 | }) 34 | }) 35 | 36 | 37 | 38 | -------------------------------------------------------------------------------- /server.R: -------------------------------------------------------------------------------- 1 | #============================================================================ 2 | # This is the server code for the tree subset app 3 | # 4 | # Tyler Bradley 5 | #============================================================================ 6 | 7 | shinyServer( 8 | function(input, output, session){ 9 | session$onSessionEnded(stopApp) 10 | 11 | # reactive values are used to reset the file input when the 12 | # file type is changed. This is done to prevent errors from 13 | # popping up before a new file can be uploaded. 14 | rv <- reactiveValues( 15 | data = NULL, 16 | clear = FALSE 17 | ) 18 | 19 | observeEvent(input$upload_tree, { 20 | rv$clear <- FALSE 21 | }, priority = 1000) 22 | 23 | observeEvent(input$file_type, { 24 | rv$data <- NULL 25 | rv$clear <- TRUE 26 | reset('upload_tree') 27 | }, priority = 1000) 28 | 29 | # This reactive value reads in the tree object using one of the 30 | # treeio import functions. If the function called, based on input$file_type 31 | # fails, NULL is returned 32 | tree <- reactive({ 33 | req(input$upload_tree, input$file_type, 34 | input$upload_tree, !rv$clear) 35 | 36 | file <- input$upload_tree$datapath 37 | 38 | output <- switch( 39 | input$file_type, 40 | tree = possibly(read.tree, otherwise = NULL)(file), 41 | beast = possibly(read.beast, otherwise = NULL)(file), 42 | # codeml = possibly(read.beast, otherwise = NULL)(file), 43 | mlc = possibly(read.codeml_mlc, otherwise = NULL)(file), 44 | # hyphy = possibly(read.hyphy, otherwise = NULL)(file), 45 | jplace = possibly(read.jplace, otherwise = NULL)(file), 46 | mrbayes = possibly(read.mrbayes, otherwise = NULL)(file), 47 | nhx = possibly(read.nhx, otherwise = NULL)(file), 48 | rst = possibly(read.paml_rst, otherwise = NULL)(file), 49 | phylip = possibly(read.phylip, otherwise = NULL)(file), 50 | r8s = possibly(read.r8s, otherwise = NULL)(file), 51 | raxml = possibly(read.raxml, otherwise = NULL)(file) 52 | 53 | ) 54 | 55 | # read.tree(input$upload_tree$datapath) 56 | 57 | return(output) 58 | }) 59 | 60 | 61 | # This tree_df function 62 | tree_df <- reactive({ 63 | req(tree()) 64 | output <- tree() %>% 65 | as_data_frame() 66 | }) 67 | 68 | observe({ 69 | req(input$upload_tree) 70 | 71 | if (is.null(tree())) { 72 | shinyalert("Tree import error", paste("There was an error when trying to read your tree!", 73 | "Did you select the correct file format?"), 74 | type = "error") 75 | } 76 | }) 77 | 78 | 79 | # Rendering the ui elements to select the node to subset, 80 | # how far back to subset, and tree options (text size, height, width) 81 | output$select_node_render <- renderUI({ 82 | req(input$upload_tree, tree()) 83 | output <- tagList( 84 | fluidRow( 85 | column( 86 | 12, 87 | selectizeInput( 88 | inputId = "select_node", 89 | label = "Select Node:", 90 | choices = tree_df() %>% 91 | select(label) %>% 92 | arrange(label) %>% 93 | pull(label), 94 | width = "100%" 95 | ) 96 | ) 97 | ), 98 | fluidRow( 99 | column( 100 | 3, 101 | numericInput( 102 | inputId = "subtree_levels_back", 103 | label = "Select Number of Ancestral Levels:", 104 | min = 1, 105 | value = 10 106 | ) 107 | ), 108 | column( 109 | 3, 110 | numericInput( 111 | inputId = "subtree_text_size", 112 | label = "Select label text size:", 113 | min = 2, 114 | value = 3 115 | ) 116 | ), 117 | column( 118 | 3, 119 | numericInput( 120 | inputId = "subtree_plot_height", 121 | label = "Select plot height", 122 | value = 1200 123 | ) 124 | ), 125 | column( 126 | 3, 127 | numericInput( 128 | inputId = "subtree_width_multiply", 129 | label = "Select plot width multiplier:", 130 | value = 1.4, 131 | min = 1, 132 | step = 0.1 133 | ) 134 | ) 135 | ) 136 | 137 | 138 | ) 139 | 140 | 141 | return(output) 142 | }) 143 | 144 | # creating the subtree 145 | output$subtree <- renderPlot({ 146 | req(input$select_node, tree(), 147 | input$subtree_width_multiply, 148 | input$subtree_text_size, 149 | input$subtree_plot_height) 150 | 151 | # getting the subtree phylo or treedata object 152 | sub_tree <- tree_subset(tree(), node = input$select_node, 153 | levels_back = input$subtree_levels_back) 154 | 155 | # extracting the tip labels from the sub tree 156 | if (isS4(sub_tree)) { 157 | labels <- sub_tree@phylo$tip.label 158 | } else { 159 | labels <- sub_tree$tip.label 160 | } 161 | 162 | # doing some basic manipulation on labels 163 | # this will only really work for labels of the format 164 | # ;k__;p__;c__;o__;f__;g__;s__ 165 | labels_df <- tibble( 166 | label = labels, 167 | genus = str_extract(label, "[^;]+;[^;]+$") %>% str_replace(";[^;]+$", ""), 168 | species = str_extract(label, "[^;]+$") 169 | ) %>% 170 | mutate( 171 | species = if_else(is.na(genus), "", str_replace(species, "s__", "")), 172 | genus = if_else(is.na(genus), label, str_replace(genus, "g__", "")) 173 | ) 174 | 175 | # creating the plot 176 | p <- sub_tree %>% 177 | ggtree(aes(color = group)) %<+% labels_df + 178 | geom_tiplab(aes(label = paste(genus, species)), 179 | size = input$subtree_text_size) + 180 | theme_tree2() + 181 | scale_color_manual(values = c(`1` = "red", `0` = "black")) 182 | 183 | p + lims(x = c(0, max(p$data$x) * input$subtree_width_multiply)) 184 | }) 185 | 186 | # creating the ui element for the subtree 187 | output$subtree_render <- renderUI({ 188 | req(input$subtree_plot_height, tree()) 189 | plotOutput("subtree", height = input$subtree_plot_height) 190 | }) 191 | 192 | 193 | } 194 | ) -------------------------------------------------------------------------------- /tree-subset-shiny.Rproj: -------------------------------------------------------------------------------- 1 | Version: 1.0 2 | 3 | RestoreWorkspace: Default 4 | SaveWorkspace: Default 5 | AlwaysSaveHistory: Default 6 | 7 | EnableCodeIndexing: Yes 8 | UseSpacesForTab: Yes 9 | NumSpacesForTab: 2 10 | Encoding: UTF-8 11 | 12 | RnwWeave: Sweave 13 | LaTeX: pdfLaTeX 14 | -------------------------------------------------------------------------------- /ui.R: -------------------------------------------------------------------------------- 1 | #============================================================================== 2 | # This is the ui code for the tree subset shiny app 3 | # 4 | # Tyler Bradley 5 | #============================================================================== 6 | 7 | shinyUI( 8 | tagList( 9 | useShinyalert(), 10 | useShinyjs(), 11 | navbarPage( 12 | title = "Phylogenetic Tree Subsetting", 13 | tabPanel( 14 | title = "Explore Tree", 15 | fluidRow( 16 | class = "inputs", 17 | column( 18 | 6, 19 | selectInput( 20 | inputId = "file_type", 21 | label = "Select Tree File Type:", 22 | choices = c( 23 | "Tree" = "tree", 24 | "Beast" = "beast", 25 | # "CodeML" = "codeml", 26 | "CodeML mlc" = "mlc", 27 | # "HYPHY" = "hyphy", 28 | "jplace" = "jplace", 29 | "MrBayes" = "mrbayes", 30 | "NHX" = "nhx", 31 | "rst (CODEML/BASEML)" = "rst", 32 | "phylip" = "phylip", 33 | # "r8s" = "r8s", 34 | "RAxML" = "raxml" 35 | ), 36 | selected = "tree" 37 | ) 38 | ), 39 | column( 40 | 6, 41 | fileInput( 42 | inputId = "upload_tree", 43 | label = "Select Tree File:" 44 | ) 45 | ) 46 | ), 47 | uiOutput("select_node_render"), 48 | fluidRow( 49 | uiOutput( 50 | "subtree_render" 51 | ) 52 | ) 53 | ) 54 | ) 55 | ) 56 | ) --------------------------------------------------------------------------------