├── LICENSE ├── README.md ├── batchscript-20240928202652 ├── data ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-38.pyc │ ├── build_dataset.cpython-38.pyc │ ├── collect_3d.cpython-38.pyc │ ├── dataset_3d.cpython-38.pyc │ ├── dataset_3d_noshuffle.cpython-38.pyc │ ├── dataset_3d_region.cpython-38.pyc │ ├── dataset_downstream.cpython-38.pyc │ ├── dataset_for_ddp_evaluate_3d.cpython-38.pyc │ ├── evaluate_dataset.cpython-38.pyc │ ├── inference_dataset.cpython-38.pyc │ └── sampler.cpython-38.pyc ├── build_dataset.py ├── build_unet_dataset.py ├── collect_3d.py ├── collect_3d_unet.py ├── collect_fn.py ├── dataset_3d.py ├── dataset_3d_new.py ├── dataset_3d_unet.py ├── dataset_config │ ├── v4_initial.json │ ├── v4_reweight.json │ └── v4_reweight_split.json ├── dataset_for_ddp_evaluate_3d.py ├── dataset_for_ddp_evaluate_unet.py ├── dataset_for_ddp_inference_3d.py ├── evaluate_dataset.py ├── inference_dataset.py ├── map_label_to_index.py └── sampler.py ├── dataset ├── inference_demo │ ├── Case_00176_0000.nii.gz │ └── demo.jsonl └── mod_lab(49).json ├── docs └── method-lorkd.jpg ├── evaluate ├── SurfaceDice.py ├── __init__.py ├── __pycache__ │ ├── SurfaceDice.cpython-38.pyc │ ├── __init__.cpython-38.pyc │ ├── inference_lora.cpython-38.pyc │ ├── merge_after_evalute.cpython-38.pyc │ ├── metric.cpython-38.pyc │ └── params.cpython-38.pyc ├── adjust_csv.py ├── inference_lora.py ├── merge_after_evalute.py ├── metric.py └── params.py ├── inference_lora.py ├── inference_lora_imbalance.py ├── log └── async │ └── inference │ ├── lorkd_imbalance_nano_inference_demo.out │ └── lorkd_imbalance_pro_inference_demo.out ├── lorkd.yaml ├── model ├── .gitignore ├── LICENCE ├── SAT.py ├── SwinUNETR.py ├── __init__.py ├── base_bert.py ├── build_model.py ├── dynamic-network-architectures-main │ ├── .gitignore │ ├── LICENCE │ ├── README.md │ ├── dynamic_network_architectures │ │ ├── __init__.py │ │ ├── architectures │ │ │ ├── __init__.py │ │ │ ├── resnet.py │ │ │ ├── unet.py │ │ │ └── vgg.py │ │ ├── building_blocks │ │ │ ├── __init__.py │ │ │ ├── helper.py │ │ │ ├── plain_conv_encoder.py │ │ │ ├── regularization.py │ │ │ ├── residual.py │ │ │ ├── residual_encoders.py │ │ │ ├── simple_conv_blocks.py │ │ │ └── unet_decoder.py │ │ └── initialization │ │ │ ├── __init__.py │ │ │ └── weight_init.py │ ├── imgs │ │ └── Logos │ │ │ ├── DKFZ_Logo.png │ │ │ └── HI_Logo.png │ └── setup.py ├── knowledge_encoder.py ├── maskformer.py ├── med_cpt.py ├── position_encoding.py ├── query_generator.py ├── random_embed.py ├── residual_unet.py ├── text_tower.py ├── tokenizer.py ├── transformer_decoder.py ├── umamba_bot.py ├── umamba_enc.py └── umamba_mid.py ├── peft ├── __pycache__ │ ├── lora_fast.cpython-38.pyc │ └── unet_adapter.cpython-38.pyc ├── layers.py ├── lora_fast.py ├── loss.py └── unet_adapter.py ├── requirements.txt ├── sbatch_script ├── inference_lorkd_imbalance_nano_lora.sh └── inference_lorkd_imbalance_pro_lora.sh └── train ├── __init__.py ├── __pycache__ ├── __init__.cpython-38.pyc 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