├── .Rbuildignore ├── .github ├── CONTRIBUTING.md └── ISSUE_TEMPLATE.md ├── .gitignore ├── .travis.yml ├── CODE_OF_CONDUCT.md ├── DESCRIPTION ├── LICENSE.md ├── NAMESPACE ├── R ├── check_docker.R ├── docker_conn.R ├── docker_run.R ├── dockerfile.R ├── dockerfile_build.R ├── dockerfile_obj.R └── utils-pipe.R ├── README.Rmd ├── README.md ├── appveyor.yml ├── codecov.yml ├── dockyard.Rproj ├── inst └── shiny_example │ └── dockerfile_example │ └── app.R ├── man ├── build.Rd ├── check_docker.Rd ├── check_docker_imagename.Rd ├── cmd.Rd ├── commands.Rd ├── copy.Rd ├── docker_connection.Rd ├── docker_kill.Rd ├── docker_pause.Rd ├── docker_run.Rd ├── docker_stop.Rd ├── docker_unpause.Rd ├── dockerfile.Rd ├── expose.Rd ├── from.Rd ├── get_container.Rd ├── install.Rd ├── install_r_lib.Rd ├── install_r_lib_version.Rd ├── list_containers.Rd ├── list_images.Rd ├── pipe.Rd ├── print.docker_connection.Rd ├── run.Rd ├── update.Rd └── write_dockerfile.Rd └── tests ├── testthat.R └── testthat ├── helper-test_with_docker.R ├── test-check_docker.R ├── test-docker_conn.R ├── test-docker_run.R ├── test-dockerfile.R ├── test-dockerfile_build.R ├── test-dockerfile_obj.R └── testfiles ├── basic_dockerfile ├── hello_world.txt ├── multiline_dockerfile └── shiny_sample_dockerfile /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thebioengineer/dockyard/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thebioengineer/dockyard/HEAD/.github/CONTRIBUTING.md -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE.md: -------------------------------------------------------------------------------- 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