├── .github └── workflows │ └── test-Qiber3D.yml ├── .gitignore ├── .readthedocs.yml ├── LICENSE ├── Qiber3D ├── __init__.py ├── config.py ├── core.py ├── extract.py ├── figure.py ├── filter.py ├── helper.py ├── io.py ├── reconstruct.py └── render.py ├── README.md ├── docs ├── conf.py ├── config.rst ├── core.rst ├── documentation.rst ├── examples │ ├── synthetic.csv │ ├── synthetic.json │ ├── synthetic.mv3d │ └── synthetic.xlsx ├── ext │ └── html_extras.py ├── extract.rst ├── figure.rst ├── filter.rst ├── helper.rst ├── img │ ├── overview_segment_length_synthetic.png │ ├── overview_segment_length_synthetic_RGB.png │ ├── synthetic_animation_silver.gif │ ├── synthetic_show.png │ ├── synthetic_show_fiber.png │ ├── synthetic_show_segments.png │ └── synthetic_show_segments_line_flat.png ├── index.rst ├── io.rst ├── jupyter │ ├── in-output.ipynb │ ├── index.ipynb │ └── visualization.ipynb ├── load_export.rst ├── reconstruct.rst ├── render.rst ├── requirements.txt ├── setup.rst ├── static │ ├── js │ │ └── custom.js │ ├── video │ │ ├── animation_segment_synthetic.mp4 │ │ └── animation_segment_synthetic.webm │ └── x3d │ │ ├── synthetic_show.x3d │ │ ├── synthetic_show_fiber.x3d │ │ ├── synthetic_show_segment.x3d │ │ ├── synthetic_show_segment_line_flat.x3d │ │ └── vascular_like_segment.x3d ├── usage.rst ├── usage_logging.rst └── visualization.rst ├── requirements.txt ├── setup.py └── tests ├── cases ├── neuron_cb7b.ntr ├── result_ntr_cb7b.json └── result_swc_synthetic.json └── test_io.py /.github/workflows/test-Qiber3D.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/theia-dev/Qiber3D/HEAD/.github/workflows/test-Qiber3D.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/theia-dev/Qiber3D/HEAD/.gitignore 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