├── Dockerfile ├── Macosko_cell_cycle_genes.txt ├── README.md ├── alternative_clustering_results └── README.md ├── conda_env_instructions_for_mac.md ├── latest_notebook ├── Case-study_Mouse-intestinal-epithelium_1906.ipynb ├── README.md └── gprofiler_plotting.py ├── old_releases ├── Case-study_Mouse-intestinal-epithelium_1902.ipynb ├── Case-study_Mouse-intestinal-epithelium_1903.ipynb ├── Case-study_Mouse-intestinal-epithelium_190322.ipynb ├── Case-study_Mouse-intestinal-epithelium_1904.ipynb └── README.md ├── plotting_scripts ├── Klein_data_batch_effects_denoising.ipynb ├── QC_plots.ipynb └── plot_hvgs.r ├── sc_tutorial_environment.yml └── supplementary_scripts └── Splatter-marker-genes-random-data.ipynb /Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/theislab/single-cell-tutorial/HEAD/Dockerfile -------------------------------------------------------------------------------- /Macosko_cell_cycle_genes.txt: 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