├── .Rbuildignore ├── .github ├── .gitignore ├── CODE_OF_CONDUCT.md └── workflows │ ├── R-CMD-check.yaml │ ├── pkgdown.yaml │ ├── pr-commands.yaml │ └── test-coverage.yaml ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── NEWS.md ├── R ├── cpp11.R ├── densityClust-package.R ├── densityClust.R └── plotDensityClust.R ├── README.Rmd ├── README.md ├── codecov.yml ├── cran-comments.md ├── man ├── clustered.Rd ├── clusters.Rd ├── densityClust-package.Rd ├── densityClust.Rd ├── estimateDc.Rd ├── figures │ ├── README-unnamed-chunk-2-1.png │ └── README-unnamed-chunk-2-2.png ├── findClusters.Rd ├── plotDensityClust.Rd ├── plotMDS.Rd └── plotTSNE.Rd ├── src ├── .gitignore ├── cpp11.cpp ├── distanceToPeak.cpp ├── findDistValueByRowColInd.cpp └── localDensity.cpp └── tests ├── testthat.R └── testthat ├── generateReference.R └── testEquivalenceToReferenceImplementation.R /.Rbuildignore: -------------------------------------------------------------------------------- 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