├── .coveragerc ├── .coveragerc_cpu ├── .github ├── ISSUE_TEMPLATE │ └── bug_report.md └── workflows │ ├── paper-pdf.yml │ ├── python-package.yml │ └── python-publish.yml ├── .gitignore ├── .readthedocs.yaml ├── CONTRIBUTING.md ├── LICENSE ├── MANIFEST.in ├── README.md ├── coverage_command.txt ├── docs ├── benchmark.rst ├── conf.py ├── detailed_description.rst ├── example.inc ├── figs │ ├── benchmark_cpu.jpg │ ├── benchmark_gpu.jpg │ ├── benchmark_gpu_setup.jpg │ ├── update_fig.jpg │ └── usage_example.jpg ├── index.rst ├── installation.rst ├── interface.rst └── requirements_docs.txt ├── fimpy ├── __init__.py ├── cupy_kernels.py ├── fim_base.py ├── fim_cupy.py ├── fim_cutils │ ├── __init__.py │ └── fim_cutils.pyx ├── fim_np.py ├── perm_kernel_test.cu ├── solver.py └── utils │ ├── __init__.py │ ├── comp.py │ ├── cython │ ├── __init__.py │ └── comp.pyx │ └── tsitsiklis.py ├── paper.bib ├── paper.md ├── pyproject.toml ├── setup.py └── tests ├── benchmark_data └── .gitignore ├── data └── .gitignore ├── generate_benchmark_data.py ├── generate_doc_figs.py ├── generate_test_data.py ├── run_benchmark.py ├── test_custom_kernels.py ├── test_cython_methods.py └── test_fim_solvers.py /.coveragerc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/.coveragerc -------------------------------------------------------------------------------- /.coveragerc_cpu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/.coveragerc_cpu -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/bug_report.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/.github/ISSUE_TEMPLATE/bug_report.md -------------------------------------------------------------------------------- /.github/workflows/paper-pdf.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/.github/workflows/paper-pdf.yml -------------------------------------------------------------------------------- /.github/workflows/python-package.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/.github/workflows/python-package.yml -------------------------------------------------------------------------------- /.github/workflows/python-publish.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/.github/workflows/python-publish.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/.gitignore -------------------------------------------------------------------------------- /.readthedocs.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/.readthedocs.yaml -------------------------------------------------------------------------------- /CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/CONTRIBUTING.md -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- 1 | global-include *.pyx 2 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/README.md -------------------------------------------------------------------------------- /coverage_command.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/coverage_command.txt -------------------------------------------------------------------------------- /docs/benchmark.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/docs/benchmark.rst -------------------------------------------------------------------------------- /docs/conf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/docs/conf.py -------------------------------------------------------------------------------- /docs/detailed_description.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/docs/detailed_description.rst -------------------------------------------------------------------------------- /docs/example.inc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/docs/example.inc -------------------------------------------------------------------------------- /docs/figs/benchmark_cpu.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/docs/figs/benchmark_cpu.jpg -------------------------------------------------------------------------------- /docs/figs/benchmark_gpu.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/docs/figs/benchmark_gpu.jpg -------------------------------------------------------------------------------- /docs/figs/benchmark_gpu_setup.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/docs/figs/benchmark_gpu_setup.jpg -------------------------------------------------------------------------------- /docs/figs/update_fig.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/docs/figs/update_fig.jpg -------------------------------------------------------------------------------- /docs/figs/usage_example.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/docs/figs/usage_example.jpg -------------------------------------------------------------------------------- /docs/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/docs/index.rst -------------------------------------------------------------------------------- /docs/installation.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/docs/installation.rst -------------------------------------------------------------------------------- /docs/interface.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/docs/interface.rst -------------------------------------------------------------------------------- /docs/requirements_docs.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/docs/requirements_docs.txt -------------------------------------------------------------------------------- /fimpy/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/fimpy/__init__.py -------------------------------------------------------------------------------- /fimpy/cupy_kernels.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/fimpy/cupy_kernels.py -------------------------------------------------------------------------------- /fimpy/fim_base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/fimpy/fim_base.py -------------------------------------------------------------------------------- /fimpy/fim_cupy.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/fimpy/fim_cupy.py -------------------------------------------------------------------------------- /fimpy/fim_cutils/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/fimpy/fim_cutils/__init__.py -------------------------------------------------------------------------------- /fimpy/fim_cutils/fim_cutils.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/fimpy/fim_cutils/fim_cutils.pyx -------------------------------------------------------------------------------- /fimpy/fim_np.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/fimpy/fim_np.py -------------------------------------------------------------------------------- /fimpy/perm_kernel_test.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/fimpy/perm_kernel_test.cu -------------------------------------------------------------------------------- /fimpy/solver.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/fimpy/solver.py -------------------------------------------------------------------------------- /fimpy/utils/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/fimpy/utils/__init__.py -------------------------------------------------------------------------------- /fimpy/utils/comp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/fimpy/utils/comp.py -------------------------------------------------------------------------------- /fimpy/utils/cython/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/fimpy/utils/cython/__init__.py -------------------------------------------------------------------------------- /fimpy/utils/cython/comp.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/fimpy/utils/cython/comp.pyx -------------------------------------------------------------------------------- /fimpy/utils/tsitsiklis.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/fimpy/utils/tsitsiklis.py -------------------------------------------------------------------------------- /paper.bib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/paper.bib -------------------------------------------------------------------------------- /paper.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/paper.md -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/pyproject.toml -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/setup.py -------------------------------------------------------------------------------- /tests/benchmark_data/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/tests/benchmark_data/.gitignore -------------------------------------------------------------------------------- /tests/data/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/tests/data/.gitignore -------------------------------------------------------------------------------- /tests/generate_benchmark_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/tests/generate_benchmark_data.py -------------------------------------------------------------------------------- /tests/generate_doc_figs.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/tests/generate_doc_figs.py -------------------------------------------------------------------------------- /tests/generate_test_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/tests/generate_test_data.py -------------------------------------------------------------------------------- /tests/run_benchmark.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/tests/run_benchmark.py -------------------------------------------------------------------------------- /tests/test_custom_kernels.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/tests/test_custom_kernels.py -------------------------------------------------------------------------------- /tests/test_cython_methods.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/tests/test_cython_methods.py -------------------------------------------------------------------------------- /tests/test_fim_solvers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/thomgrand/fim-python/HEAD/tests/test_fim_solvers.py --------------------------------------------------------------------------------