├── .DS_Store ├── .Rbuildignore ├── .gitignore ├── CHANGELOG.md ├── DESCRIPTION ├── LICENSE.txt ├── NAMESPACE ├── R ├── RcppExports.R ├── map_methods.R ├── methods.R ├── plot_extras.R ├── point_metrics_methods.R ├── sample_methods.R ├── stem_points_methods.R ├── stem_segmentation_methods.R └── tree_points_methods.R ├── README.md ├── TreeLS.Rproj ├── inst ├── extdata │ ├── pine.laz │ ├── pine_plot.laz │ └── spruce.laz └── include │ ├── algorithms.hpp │ ├── classes.hpp │ ├── constrained │ └── sumt.hpp │ ├── line_search │ └── more_thuente.hpp │ ├── methods.hpp │ ├── misc │ ├── determine_bounds_type.hpp │ ├── error_reporting.hpp │ ├── error_reporting.ipp │ ├── jacobian_adjust.hpp │ ├── misc.hpp │ ├── numerical_gradient.hpp │ ├── numerical_hessian.hpp │ ├── optim_options.hpp │ ├── optim_structs.hpp │ ├── transform_vals.hpp │ ├── unit_vec.hpp │ └── unit_vec.ipp │ ├── optim.hpp │ ├── unconstrained │ ├── bfgs.hpp │ ├── cg.hpp │ ├── de.hpp │ ├── de_prmm.hpp │ ├── gd.hpp │ ├── lbfgs.hpp │ ├── newton.hpp │ ├── nm.hpp │ ├── pso.hpp │ └── pso_dv.hpp │ ├── utils.hpp │ └── zeros │ └── broyden.hpp ├── man-roxygen ├── example-segmentation.R ├── example-tree-map.R ├── param-colnames.R ├── param-conf.R ├── param-h_step.R ├── param-hbase.R ├── param-inliers.R ├── param-las.R ├── param-max-curvature.R ├── param-max-d.R ├── param-max-radius.R ├── param-max-verticality.R ├── param-min-density.R ├── param-min-h.R ├── param-min-n.R ├── param-min-votes.R ├── param-min_h-max_h.R ├── param-n-best.R ├── param-n-ransac.R ├── param-pixel-size.R ├── param-tol.R ├── param-v3d.R ├── param-votes-weight.R ├── param-voxel-spacing.R ├── param-z-dev.R ├── reference-liang.R ├── reference-olofsson-2016.R ├── reference-olofsson.R ├── reference-thesis.R ├── reference-wang.R ├── reference-zhou.R ├── return-las.R ├── section-brute-force.R ├── section-circlefit.R ├── section-cylinderfit.R ├── section-eigen-decomposition.R ├── section-hough-transform.R ├── section-irls.R ├── section-knn.R ├── section-normals-voting.R ├── section-point-metrics.R ├── section-ransac.R └── section-voxel.R ├── man ├── circleFit.Rd ├── cylinderFit.Rd ├── fastPointMetrics.Rd ├── fastPointMetrics.available.Rd ├── gpsTimeFilter.Rd ├── map.eigen.knn.Rd ├── map.eigen.voxel.Rd ├── map.hough.Rd ├── map.pick.Rd ├── nnFilter.Rd ├── ptm.knn.Rd ├── ptm.voxel.Rd ├── readTLS.Rd ├── setTLS.Rd ├── sgt.bf.cylinder.Rd ├── sgt.irls.circle.Rd ├── sgt.irls.cylinder.Rd ├── sgt.ransac.circle.Rd ├── sgt.ransac.cylinder.Rd ├── shapeFit.Rd ├── shapeFit.forks.Rd ├── smp.randomize.Rd ├── smp.voxelize.Rd ├── stemPoints.Rd ├── stemSegmentation.Rd ├── stm.eigen.knn.Rd ├── stm.eigen.voxel.Rd ├── stm.hough.Rd ├── tlsCrop.Rd ├── tlsInventory.Rd ├── tlsNormalize.Rd ├── tlsPlot.Rd ├── tlsRotate.Rd ├── tlsSample.Rd ├── tlsTransform.Rd ├── treeMap.Rd ├── treeMap.merge.Rd ├── treeMap.positions.Rd ├── treePoints.Rd ├── trp.crop.Rd ├── trp.voronoi.Rd └── writeTLS.Rd ├── old.R ├── src ├── Makevars ├── Makevars.win ├── RcppExports.cpp 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