├── .Rbuildignore ├── .coveralls.yml ├── .github ├── .gitignore ├── ISSUE_TEMPLATE │ └── bug_report.md └── workflows │ └── rworkflows.yml ├── .gitignore ├── .travis.yml ├── DESCRIPTION ├── NAMESPACE ├── R ├── attach.R ├── data.R ├── dplyr_methods.R ├── ggplot2_methods.R ├── methods.R ├── methods_DEPRECATED.R ├── pillar_utilities.R ├── plotly_methods.R ├── print_method.R ├── tibble_methods.R ├── tidySingleCellExperiment-package.R ├── tidybulk_utilities.R ├── tidyr_methods.R ├── utilities.R ├── utils-pipe.R └── zzz.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── codecov.yml ├── data ├── cell_type_df.rda ├── pbmc_small.rda └── pbmc_small_nested_interactions.rda ├── inst ├── CITATION ├── NEWS.rd └── extdata │ ├── plotly.png │ └── readme_figures │ ├── pc_plot-1.png │ ├── plot1-1.png │ ├── plot2-1.png │ ├── unnamed-chunk-12-1.png │ ├── unnamed-chunk-13-1.png │ ├── unnamed-chunk-17-1.png │ ├── unnamed-chunk-18-1.png │ └── unnamed-chunk-21-1.png ├── man ├── add_class.Rd ├── aggregate_cells.Rd ├── anti_join.Rd ├── append_samples.Rd ├── arrange.Rd ├── as_tibble.Rd ├── cell_type_df.Rd ├── count.Rd ├── distinct.Rd ├── drop_class.Rd ├── extract.Rd ├── filter.Rd ├── formatting.Rd ├── full_join.Rd ├── ggplot.Rd ├── glimpse.Rd ├── group_by.Rd ├── group_split.Rd ├── inner_join.Rd ├── join_features.Rd ├── join_transcripts.Rd ├── left_join.Rd ├── mutate.Rd ├── nest.Rd ├── pbmc_small.Rd ├── pbmc_small_nested_interactions.Rd ├── pipe.Rd ├── pivot_longer.Rd ├── plot_ly.Rd ├── pull.Rd ├── quo_names.Rd ├── rename.Rd ├── return_arguments_of.Rd ├── right_join.Rd ├── rowwise.Rd ├── sample_n.Rd ├── select.Rd ├── separate.Rd ├── slice.Rd ├── summarise.Rd ├── tbl_format_header.Rd ├── tidy.Rd ├── tidySingleCellExperiment-package.Rd ├── unite.Rd └── unnest.Rd ├── tests ├── testthat.R └── testthat │ ├── Rplots.pdf │ ├── test-dplyr_methods.R │ ├── test-ggplotly_methods.R │ ├── test-methods.R │ └── test-tidyr_methods.R └── vignettes ├── introduction.Rmd └── 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