├── .Rbuildignore ├── .gitignore ├── .travis.yml ├── DESCRIPTION ├── Makefile ├── NAMESPACE ├── NEWS.md ├── R ├── cox_res.R ├── get_c_stat.R ├── get_cox_summary.R ├── get_logrank_res.R ├── get_nrisk_tbl.R ├── get_surv_prob.R ├── iter_get_cox_res.R └── survutils.R ├── README.Rmd ├── README.md ├── cran-comments.md ├── man ├── add_sig_line_to_plot.Rd ├── figures │ ├── get_cox_res_example-1.png │ ├── get_cox_res_group_colors_example-1.png │ ├── get_cox_res_group_example-1.png │ ├── get_cox_res_group_example_facet_row-1.png │ ├── iter-cox-res-example-1.png │ └── iter-cox-res-group-example-1.png ├── get_c_stat.Rd ├── get_cox_res.Rd ├── get_cox_summary.Rd ├── get_logrank_res.Rd ├── get_nrisk_tbl.Rd ├── get_surv_prob.Rd ├── iter_get_cox_res.Rd ├── plot_cox_res.Rd └── survutils.Rd └── tests ├── testthat.R └── testthat ├── test_get_cox_res.R └── test_plot_cox_res.R /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | README.html 2 | -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/.travis.yml -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- 1 | %.md : %.Rmd 2 | Rscript --slave -e "rmarkdown::render('$<')" 3 | -------------------------------------------------------------------------------- /NAMESPACE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/NAMESPACE -------------------------------------------------------------------------------- /NEWS.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/NEWS.md -------------------------------------------------------------------------------- /R/cox_res.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/R/cox_res.R -------------------------------------------------------------------------------- /R/get_c_stat.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/R/get_c_stat.R -------------------------------------------------------------------------------- /R/get_cox_summary.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/R/get_cox_summary.R -------------------------------------------------------------------------------- /R/get_logrank_res.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/R/get_logrank_res.R -------------------------------------------------------------------------------- /R/get_nrisk_tbl.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/R/get_nrisk_tbl.R -------------------------------------------------------------------------------- /R/get_surv_prob.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/R/get_surv_prob.R -------------------------------------------------------------------------------- /R/iter_get_cox_res.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/R/iter_get_cox_res.R -------------------------------------------------------------------------------- /R/survutils.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/R/survutils.R -------------------------------------------------------------------------------- /README.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/README.Rmd -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/README.md -------------------------------------------------------------------------------- /cran-comments.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/cran-comments.md -------------------------------------------------------------------------------- /man/add_sig_line_to_plot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/man/add_sig_line_to_plot.Rd -------------------------------------------------------------------------------- /man/figures/get_cox_res_example-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/man/figures/get_cox_res_example-1.png -------------------------------------------------------------------------------- /man/figures/get_cox_res_group_colors_example-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/man/figures/get_cox_res_group_colors_example-1.png -------------------------------------------------------------------------------- /man/figures/get_cox_res_group_example-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/man/figures/get_cox_res_group_example-1.png -------------------------------------------------------------------------------- /man/figures/get_cox_res_group_example_facet_row-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/man/figures/get_cox_res_group_example_facet_row-1.png -------------------------------------------------------------------------------- /man/figures/iter-cox-res-example-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/man/figures/iter-cox-res-example-1.png -------------------------------------------------------------------------------- /man/figures/iter-cox-res-group-example-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/man/figures/iter-cox-res-group-example-1.png -------------------------------------------------------------------------------- /man/get_c_stat.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/man/get_c_stat.Rd -------------------------------------------------------------------------------- /man/get_cox_res.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/man/get_cox_res.Rd -------------------------------------------------------------------------------- /man/get_cox_summary.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/man/get_cox_summary.Rd -------------------------------------------------------------------------------- /man/get_logrank_res.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/man/get_logrank_res.Rd -------------------------------------------------------------------------------- /man/get_nrisk_tbl.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/man/get_nrisk_tbl.Rd -------------------------------------------------------------------------------- /man/get_surv_prob.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/man/get_surv_prob.Rd -------------------------------------------------------------------------------- /man/iter_get_cox_res.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/man/iter_get_cox_res.Rd -------------------------------------------------------------------------------- /man/plot_cox_res.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/man/plot_cox_res.Rd -------------------------------------------------------------------------------- /man/survutils.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/man/survutils.Rd -------------------------------------------------------------------------------- /tests/testthat.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/tests/testthat.R -------------------------------------------------------------------------------- /tests/testthat/test_get_cox_res.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/tests/testthat/test_get_cox_res.R -------------------------------------------------------------------------------- /tests/testthat/test_plot_cox_res.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tinyheero/survutils/HEAD/tests/testthat/test_plot_cox_res.R --------------------------------------------------------------------------------