├── README.md ├── baseline.py ├── dataset ├── aln │ └── 1A1XA.aln └── fasta │ └── 1A1XA.fasta ├── ensemble.py ├── feature.py ├── multitask.py ├── pipeline.py ├── rr.py ├── run_contact_pred.py ├── run_hhblits_local.py ├── run_ss_pred.py ├── tfrecord.py ├── tfrecord └── 1A1XA └── weighting.py /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tomiilab/DeepECA/HEAD/README.md -------------------------------------------------------------------------------- /baseline.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tomiilab/DeepECA/HEAD/baseline.py -------------------------------------------------------------------------------- /dataset/aln/1A1XA.aln: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tomiilab/DeepECA/HEAD/dataset/aln/1A1XA.aln -------------------------------------------------------------------------------- /dataset/fasta/1A1XA.fasta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tomiilab/DeepECA/HEAD/dataset/fasta/1A1XA.fasta -------------------------------------------------------------------------------- /ensemble.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tomiilab/DeepECA/HEAD/ensemble.py -------------------------------------------------------------------------------- /feature.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tomiilab/DeepECA/HEAD/feature.py -------------------------------------------------------------------------------- /multitask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tomiilab/DeepECA/HEAD/multitask.py -------------------------------------------------------------------------------- /pipeline.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tomiilab/DeepECA/HEAD/pipeline.py -------------------------------------------------------------------------------- /rr.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tomiilab/DeepECA/HEAD/rr.py -------------------------------------------------------------------------------- /run_contact_pred.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tomiilab/DeepECA/HEAD/run_contact_pred.py -------------------------------------------------------------------------------- /run_hhblits_local.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tomiilab/DeepECA/HEAD/run_hhblits_local.py -------------------------------------------------------------------------------- /run_ss_pred.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tomiilab/DeepECA/HEAD/run_ss_pred.py -------------------------------------------------------------------------------- /tfrecord.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tomiilab/DeepECA/HEAD/tfrecord.py -------------------------------------------------------------------------------- /tfrecord/1A1XA: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tomiilab/DeepECA/HEAD/tfrecord/1A1XA -------------------------------------------------------------------------------- /weighting.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tomiilab/DeepECA/HEAD/weighting.py --------------------------------------------------------------------------------