├── LICENSE ├── README.md ├── bamclipper.sh ├── clipprimer.pl ├── examples ├── SRR2075598.bam ├── SRR2075598.bam.bai ├── SRR2075598.primerclipped.bam ├── SRR2075598.primerclipped.bam.bai └── trusight_myeloid.bedpe ├── injectseparator.pl └── scripts └── manifest2bedpe.pl /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tommyau/bamclipper/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tommyau/bamclipper/HEAD/README.md -------------------------------------------------------------------------------- /bamclipper.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tommyau/bamclipper/HEAD/bamclipper.sh -------------------------------------------------------------------------------- /clipprimer.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tommyau/bamclipper/HEAD/clipprimer.pl -------------------------------------------------------------------------------- /examples/SRR2075598.bam: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tommyau/bamclipper/HEAD/examples/SRR2075598.bam -------------------------------------------------------------------------------- /examples/SRR2075598.bam.bai: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tommyau/bamclipper/HEAD/examples/SRR2075598.bam.bai -------------------------------------------------------------------------------- /examples/SRR2075598.primerclipped.bam: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tommyau/bamclipper/HEAD/examples/SRR2075598.primerclipped.bam -------------------------------------------------------------------------------- /examples/SRR2075598.primerclipped.bam.bai: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tommyau/bamclipper/HEAD/examples/SRR2075598.primerclipped.bam.bai -------------------------------------------------------------------------------- /examples/trusight_myeloid.bedpe: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tommyau/bamclipper/HEAD/examples/trusight_myeloid.bedpe -------------------------------------------------------------------------------- /injectseparator.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tommyau/bamclipper/HEAD/injectseparator.pl -------------------------------------------------------------------------------- /scripts/manifest2bedpe.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tommyau/bamclipper/HEAD/scripts/manifest2bedpe.pl --------------------------------------------------------------------------------