├── .gitignore ├── LICENSE.txt ├── PooPyLab ├── ASMModel │ ├── WAS.pmt │ ├── __init__.py │ ├── asm_1.py │ ├── asm_2d.py │ ├── asmbase.py │ ├── asmreactor.pmt │ ├── constants.py │ ├── effluent.pmt │ ├── influent.pmt │ ├── pipe.pmt │ ├── splitter.pmt │ ├── template │ │ ├── WAS.pmt │ │ ├── asmreactor.pmt │ │ ├── effluent.pmt │ │ ├── influent.pmt │ │ ├── pipe.pmt │ │ ├── splitter.pmt │ │ └── was.pmt │ └── was.pmt ├── __init__.py ├── model_builder │ ├── __init__.py │ ├── sundials │ │ ├── __init__.py │ │ ├── compiler_script.py │ │ ├── generic_settings.h │ │ ├── model_builder_common.py │ │ ├── model_composer.py │ │ ├── model_constants.h │ │ ├── model_input.h │ │ ├── sundials_ida_trial.c │ │ ├── syseqs.c │ │ ├── system_equations.c │ │ ├── system_equations.h │ │ ├── system_equations_backup.c │ │ ├── template.c │ │ ├── utilities.c │ │ └── utilities.h │ └── tested_but_not_used │ │ ├── model_builder_pythonic │ │ ├── ASM_2d.csv │ │ ├── KZTest.py │ │ ├── equation_based_model.py │ │ ├── model_writer.py │ │ ├── monod_parser_test.py │ │ ├── splitter.ppm │ │ ├── template_asm1.csv │ │ └── template_asm1_backup.csv │ │ └── tested_for_no_parentheses ├── unit_procs │ ├── __init__.py │ ├── base.py │ ├── bio.py │ ├── physchem.py │ └── streams.py └── utils │ ├── __init__.py │ ├── datatypes.py │ ├── pfd.py │ └── run.py ├── README.md ├── docs ├── Doxyfile ├── Doxyfile.bak ├── DoxygenLayout.xml ├── brownbook_readme.md ├── change_log.txt ├── config.dox.old ├── footer.html ├── header.html ├── py_filter └── style.css ├── examples ├── CMAS.py ├── CMAS_test.py ├── CSTR.py ├── CSTR_test.py ├── FOUR_STG_BARDEN.py ├── FOUR_STG_BARDEN_test.py ├── MLE.py ├── MLE_test.py ├── PRE_POST_AX_DN.py ├── PRE_POST_AX_DN_test.py └── __init__.py ├── setup.py ├── syseqs.c └── tests ├── __init__.py ├── archive ├── CMAS_test.py ├── connection_test.py ├── partition_tearing_test_3.py ├── test_functions_3.py └── unused_functions.txt ├── context.py ├── syseqs.c ├── test_connect.json ├── test_connectivity.py ├── test_model_composer.py └── test_naming.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/LICENSE.txt -------------------------------------------------------------------------------- /PooPyLab/ASMModel/WAS.pmt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/ASMModel/WAS.pmt -------------------------------------------------------------------------------- /PooPyLab/ASMModel/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /PooPyLab/ASMModel/asm_1.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/ASMModel/asm_1.py -------------------------------------------------------------------------------- /PooPyLab/ASMModel/asm_2d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/ASMModel/asm_2d.py -------------------------------------------------------------------------------- /PooPyLab/ASMModel/asmbase.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/ASMModel/asmbase.py -------------------------------------------------------------------------------- /PooPyLab/ASMModel/asmreactor.pmt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/ASMModel/asmreactor.pmt -------------------------------------------------------------------------------- /PooPyLab/ASMModel/constants.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/ASMModel/constants.py -------------------------------------------------------------------------------- /PooPyLab/ASMModel/effluent.pmt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/ASMModel/effluent.pmt -------------------------------------------------------------------------------- /PooPyLab/ASMModel/influent.pmt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/ASMModel/influent.pmt -------------------------------------------------------------------------------- /PooPyLab/ASMModel/pipe.pmt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/ASMModel/pipe.pmt -------------------------------------------------------------------------------- /PooPyLab/ASMModel/splitter.pmt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/ASMModel/splitter.pmt -------------------------------------------------------------------------------- /PooPyLab/ASMModel/template/WAS.pmt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/ASMModel/template/WAS.pmt -------------------------------------------------------------------------------- /PooPyLab/ASMModel/template/asmreactor.pmt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/ASMModel/template/asmreactor.pmt -------------------------------------------------------------------------------- /PooPyLab/ASMModel/template/effluent.pmt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/ASMModel/template/effluent.pmt -------------------------------------------------------------------------------- /PooPyLab/ASMModel/template/influent.pmt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/ASMModel/template/influent.pmt -------------------------------------------------------------------------------- /PooPyLab/ASMModel/template/pipe.pmt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/ASMModel/template/pipe.pmt -------------------------------------------------------------------------------- /PooPyLab/ASMModel/template/splitter.pmt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/ASMModel/template/splitter.pmt -------------------------------------------------------------------------------- /PooPyLab/ASMModel/template/was.pmt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/ASMModel/template/was.pmt -------------------------------------------------------------------------------- /PooPyLab/ASMModel/was.pmt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/ASMModel/was.pmt -------------------------------------------------------------------------------- /PooPyLab/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /PooPyLab/model_builder/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /PooPyLab/model_builder/sundials/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /PooPyLab/model_builder/sundials/compiler_script.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/sundials/compiler_script.py -------------------------------------------------------------------------------- /PooPyLab/model_builder/sundials/generic_settings.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/sundials/generic_settings.h -------------------------------------------------------------------------------- /PooPyLab/model_builder/sundials/model_builder_common.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/sundials/model_builder_common.py -------------------------------------------------------------------------------- /PooPyLab/model_builder/sundials/model_composer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/sundials/model_composer.py -------------------------------------------------------------------------------- /PooPyLab/model_builder/sundials/model_constants.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/sundials/model_constants.h -------------------------------------------------------------------------------- /PooPyLab/model_builder/sundials/model_input.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/sundials/model_input.h -------------------------------------------------------------------------------- /PooPyLab/model_builder/sundials/sundials_ida_trial.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/sundials/sundials_ida_trial.c -------------------------------------------------------------------------------- /PooPyLab/model_builder/sundials/syseqs.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/sundials/syseqs.c -------------------------------------------------------------------------------- /PooPyLab/model_builder/sundials/system_equations.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/sundials/system_equations.c -------------------------------------------------------------------------------- /PooPyLab/model_builder/sundials/system_equations.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/sundials/system_equations.h -------------------------------------------------------------------------------- /PooPyLab/model_builder/sundials/system_equations_backup.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/sundials/system_equations_backup.c -------------------------------------------------------------------------------- /PooPyLab/model_builder/sundials/template.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/sundials/template.c -------------------------------------------------------------------------------- /PooPyLab/model_builder/sundials/utilities.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/sundials/utilities.c -------------------------------------------------------------------------------- /PooPyLab/model_builder/sundials/utilities.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/sundials/utilities.h -------------------------------------------------------------------------------- /PooPyLab/model_builder/tested_but_not_used/model_builder_pythonic/ASM_2d.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/tested_but_not_used/model_builder_pythonic/ASM_2d.csv -------------------------------------------------------------------------------- /PooPyLab/model_builder/tested_but_not_used/model_builder_pythonic/KZTest.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/tested_but_not_used/model_builder_pythonic/KZTest.py -------------------------------------------------------------------------------- /PooPyLab/model_builder/tested_but_not_used/model_builder_pythonic/equation_based_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/tested_but_not_used/model_builder_pythonic/equation_based_model.py -------------------------------------------------------------------------------- /PooPyLab/model_builder/tested_but_not_used/model_builder_pythonic/model_writer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/tested_but_not_used/model_builder_pythonic/model_writer.py -------------------------------------------------------------------------------- /PooPyLab/model_builder/tested_but_not_used/model_builder_pythonic/monod_parser_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/tested_but_not_used/model_builder_pythonic/monod_parser_test.py -------------------------------------------------------------------------------- /PooPyLab/model_builder/tested_but_not_used/model_builder_pythonic/splitter.ppm: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/tested_but_not_used/model_builder_pythonic/splitter.ppm -------------------------------------------------------------------------------- /PooPyLab/model_builder/tested_but_not_used/model_builder_pythonic/template_asm1.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/tested_but_not_used/model_builder_pythonic/template_asm1.csv -------------------------------------------------------------------------------- /PooPyLab/model_builder/tested_but_not_used/model_builder_pythonic/template_asm1_backup.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/tested_but_not_used/model_builder_pythonic/template_asm1_backup.csv -------------------------------------------------------------------------------- /PooPyLab/model_builder/tested_but_not_used/tested_for_no_parentheses: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/model_builder/tested_but_not_used/tested_for_no_parentheses -------------------------------------------------------------------------------- /PooPyLab/unit_procs/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /PooPyLab/unit_procs/base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/unit_procs/base.py -------------------------------------------------------------------------------- /PooPyLab/unit_procs/bio.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/unit_procs/bio.py -------------------------------------------------------------------------------- /PooPyLab/unit_procs/physchem.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/unit_procs/physchem.py -------------------------------------------------------------------------------- /PooPyLab/unit_procs/streams.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/unit_procs/streams.py -------------------------------------------------------------------------------- /PooPyLab/utils/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /PooPyLab/utils/datatypes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/utils/datatypes.py -------------------------------------------------------------------------------- /PooPyLab/utils/pfd.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/utils/pfd.py -------------------------------------------------------------------------------- /PooPyLab/utils/run.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/PooPyLab/utils/run.py -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/README.md -------------------------------------------------------------------------------- /docs/Doxyfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/docs/Doxyfile -------------------------------------------------------------------------------- /docs/Doxyfile.bak: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/docs/Doxyfile.bak -------------------------------------------------------------------------------- /docs/DoxygenLayout.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/docs/DoxygenLayout.xml -------------------------------------------------------------------------------- /docs/brownbook_readme.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/docs/brownbook_readme.md -------------------------------------------------------------------------------- /docs/change_log.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/docs/change_log.txt -------------------------------------------------------------------------------- /docs/config.dox.old: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/docs/config.dox.old -------------------------------------------------------------------------------- /docs/footer.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/docs/footer.html -------------------------------------------------------------------------------- /docs/header.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/docs/header.html -------------------------------------------------------------------------------- /docs/py_filter: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/docs/py_filter -------------------------------------------------------------------------------- /docs/style.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/docs/style.css -------------------------------------------------------------------------------- /examples/CMAS.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/examples/CMAS.py -------------------------------------------------------------------------------- /examples/CMAS_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/examples/CMAS_test.py -------------------------------------------------------------------------------- /examples/CSTR.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/examples/CSTR.py -------------------------------------------------------------------------------- /examples/CSTR_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/examples/CSTR_test.py -------------------------------------------------------------------------------- /examples/FOUR_STG_BARDEN.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/examples/FOUR_STG_BARDEN.py -------------------------------------------------------------------------------- /examples/FOUR_STG_BARDEN_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/examples/FOUR_STG_BARDEN_test.py -------------------------------------------------------------------------------- /examples/MLE.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/examples/MLE.py -------------------------------------------------------------------------------- /examples/MLE_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/examples/MLE_test.py -------------------------------------------------------------------------------- /examples/PRE_POST_AX_DN.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/examples/PRE_POST_AX_DN.py -------------------------------------------------------------------------------- /examples/PRE_POST_AX_DN_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/examples/PRE_POST_AX_DN_test.py -------------------------------------------------------------------------------- /examples/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/setup.py -------------------------------------------------------------------------------- /syseqs.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/syseqs.c -------------------------------------------------------------------------------- /tests/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /tests/archive/CMAS_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/tests/archive/CMAS_test.py -------------------------------------------------------------------------------- /tests/archive/connection_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/tests/archive/connection_test.py -------------------------------------------------------------------------------- /tests/archive/partition_tearing_test_3.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/tests/archive/partition_tearing_test_3.py -------------------------------------------------------------------------------- /tests/archive/test_functions_3.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/tests/archive/test_functions_3.py -------------------------------------------------------------------------------- /tests/archive/unused_functions.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/tests/archive/unused_functions.txt -------------------------------------------------------------------------------- /tests/context.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/tests/context.py -------------------------------------------------------------------------------- /tests/syseqs.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/tests/syseqs.c -------------------------------------------------------------------------------- /tests/test_connect.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/tests/test_connect.json -------------------------------------------------------------------------------- /tests/test_connectivity.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/tests/test_connectivity.py -------------------------------------------------------------------------------- /tests/test_model_composer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/tests/test_model_composer.py -------------------------------------------------------------------------------- /tests/test_naming.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/toogad/PooPyLab_Project/HEAD/tests/test_naming.py --------------------------------------------------------------------------------