├── Dockerfile ├── LICENSE ├── README.md ├── demo ├── cfg │ ├── Input_multi_ses.m │ ├── Input_spatial_ica_bids.m │ ├── icatb │ │ ├── Neuromark_PET-FBP_1.0_modelorder-40_2x2x2.nii │ │ ├── icatb_nii2csv.sh │ │ ├── icatb_sbm_merge_nii.sh │ │ └── misc │ │ │ └── bids_dummy │ │ │ ├── dataset_description.json │ │ │ ├── icatb_defaults.m │ │ │ ├── participants.tsv │ │ │ ├── sub-01 │ │ │ └── pet │ │ │ │ └── sub-01_task-rest_pet.nii │ │ │ ├── sub-02 │ │ │ └── pet │ │ │ │ └── sub-02_task-rest_pet.nii │ │ │ ├── sub-03 │ │ │ └── pet │ │ │ │ └── sub-03_task-rest_pet.nii │ │ │ ├── sub-04 │ │ │ └── pet │ │ │ │ └── sub-04_task-rest_pet.nii │ │ │ ├── sub-05 │ │ │ └── pet │ │ │ │ └── sub-05_task-rest_pet.nii │ │ │ ├── sub-06 │ │ │ └── pet │ │ │ │ └── sub-06_task-rest_pet.nii │ │ │ ├── sub-07 │ │ │ └── pet │ │ │ │ └── sub-07_task-rest_pet.nii │ │ │ ├── sub-08 │ │ │ └── pet │ │ │ │ └── sub-08_task-rest_pet.nii │ │ │ ├── sub-09 │ │ │ └── pet │ │ │ │ └── sub-09_task-rest_pet.nii │ │ │ ├── sub-10 │ │ │ └── pet │ │ │ │ └── sub-10_task-rest_pet.nii │ │ │ └── task-rest_pet.json │ ├── input_blind_pet.m │ ├── input_neuromark_pet.m │ └── input_neuromark_pet_flexible.m ├── gift-bids-demo.sh ├── hostfiles │ ├── README.md │ └── docker │ │ ├── README.md │ │ ├── docker_blindica_pet_basic.sh │ │ ├── docker_neuromark_pet_basic.sh │ │ └── docker_neuromark_pet_sep_sub_files.sh ├── smooth10.sh └── web │ └── course081424demo.md ├── gica_bids_app.m ├── misc ├── Legacy │ └── 4.0c │ │ └── Dockerfile ├── pet │ └── pipe │ │ └── onp │ │ ├── README.md │ │ └── example_fbb │ │ ├── 02_PET_FBB_main.sh │ │ ├── 04_ADNI_Downloaded_DCM_FBB.txt │ │ ├── 05_PET_dcm2niix.sh │ │ ├── 08_mkdir_bids.sh │ │ ├── 10_mv_nii.sh │ │ ├── 15_rename_nii.sh │ │ ├── 20_mv_json.sh │ │ ├── 25_rename_json.sh │ │ ├── 34_ADNI_Downloaded_DCM_T1.txt │ │ ├── 35_t1_dcm2niix.sh │ │ ├── 40_mv_nii_t1.sh │ │ ├── 45_mv_json_t1.sh │ │ ├── 70_slurm_PET_FBB_FS_Nov2023.sh │ │ ├── 80_slurm_PET_FBB_HMC_Nov2023.sh │ │ ├── 90_slurm_PETPrep_FBB_Nov2023.sh │ │ ├── 99_final_intensities.sh │ │ ├── README.md │ │ └── trnSuvr.sh └── spect │ └── proj │ └── march2024 │ ├── Amritha_Spect_FNC_Matrix.m │ ├── Copy of SymptomChecklistQuestions.xlsx │ ├── DiagnosticClassesByPatient_9_9_2022.xlsx │ ├── DiagnosticProfileKeys.xlsx │ ├── Neuromark_fMRI_1.0_Labels.doc │ ├── README.md │ ├── SPECT_Analysis_Clinical_Part2.R │ ├── SPECT_Workspace.mat │ ├── SPECT_output_ica_parameter_info.mat │ ├── SPECT_workspace.RData │ ├── SymptomChecklistQuestions.xlsx │ ├── Total Brain Data Dictionary_Amen_21Dec22.xlsx │ ├── hcmean.txt │ └── szmean.txt └── run.sh /Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/trendscenter/gift-bids/HEAD/Dockerfile -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/trendscenter/gift-bids/HEAD/LICENSE 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