├── .gitignore ├── CHANGELOG.md ├── GPLv3_license.txt ├── GPU_howto.txt ├── InteractionDelayReconstruction_calculate.m ├── InteractionDelayReconstruction_plotting.m ├── LICENSE ├── Makefile ├── README.md ├── TEgraphanalysis.m ├── TEgroup_conditionstatssingle.m ├── TEgroup_prepare.m ├── TEgroup_stats.m ├── TEnifti2TRENTOOL_3D_3.m ├── TEplot2D.m ├── TEplot2D_beta.m ├── TEprepare.m ├── TEsurrogate_binomstats.m ├── TEsurrogatestats.m ├── TEsurrogatestats_ensemble.m ├── TRENTOOL2BrainNet.m ├── cuda ├── Makefile ├── fnearneigh_gpu.cpp ├── gpuKnnBF_kernel.cu ├── gpuKnnLibrary.cu ├── helperfunctions.cu └── range_search_all_gpu.cpp ├── example_script_CPUmethod.m ├── example_script_ensemblemethod.m ├── example_script_large_datasets.m ├── fnearneigh_gpu.cpp ├── fnearneigh_gpu.m ├── fnearneigh_gpu.mexa64 ├── fnearneigh_multigpu.mexa64 ├── install.m ├── libgpuKnnLibrary.a ├── private ├── TEC_dsvalues.m ├── TEC_dsvalues_noSourceEmb.m ├── TEactdetect.m ├── TEarch.m ├── TEarrow.m ├── TEautocorr.m ├── TEbacktracking.m ├── TEcalc.m ├── TEcallGPUsearch.m ├── TEchannelselect.m ├── TEchecknumperm.m ├── TEcmc.m ├── TEconsoleoutput.m ├── TEdfs.m ├── TEdyn.m ├── TEembedding.m ├── TEembedding_noSourceEmb.m ├── TEfindDelay.m ├── TEfindmaxte.m ├── TEflagedges.m ├── TEhighpassfilter.m ├── TEperm.m ├── TEpvalue.m ├── TEragwitz.m ├── TEsetRandStream.m ├── TEsrmc.m ├── TEtrialselect.m ├── TEwait.m ├── TEwaitbar.m ├── check_set_parallel.m ├── getDensity.m ├── highpassfilter.m └── transferentropy.m ├── range_search_all_gpu.cpp ├── range_search_all_gpu.m ├── range_search_all_gpu.mexa64 ├── range_search_all_multigpu.mexa64 ├── release.m ├── tstool_functions ├── mex_linux │ ├── mex32 │ │ ├── nn_prepare.mexglx │ │ ├── nn_search.mexglx │ │ └── range_search.mexglx │ ├── mex64 │ │ ├── nn_prepare.mexa64 │ │ ├── nn_search.mexa64 │ │ └── range_search.mexa64 │ ├── nn_prepare.m │ ├── nn_search.m │ └── range_search.m ├── mex_mac │ ├── mex32 │ │ ├── nn_prepare.mexmaci │ │ ├── nn_search.mexmaci │ │ └── 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