├── .gitmodules ├── GENOME_data ├── genes.bed ├── genes.gff3 └── genome.fa ├── RNASEQ_data ├── Sp_ds.left.fq.gz ├── Sp_ds.right.fq.gz ├── Sp_hs.left.fq.gz ├── Sp_hs.right.fq.gz ├── Sp_log.left.fq.gz ├── Sp_log.right.fq.gz ├── Sp_plat.left.fq.gz └── Sp_plat.right.fq.gz ├── cleanme.pl ├── cummeRbund.demo.R ├── docs ├── TrinityNatureProtocol.nprot.2013.084.pdf ├── rnaseq_workshop_slides.pdf ├── rnaseq_workshop_slides.pptx └── tuxedo_nprot.2012.016.pdf ├── perl_programming_for_biologists_cshl ├── README.md ├── __s │ └── mini_inchworm.example.pl ├── kmer_counts.txt └── mini_inchworm.pl ├── runTrinityDemo.pl └── runTuxedoDemo.pl /.gitmodules: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/trinityrnaseq/RNASeq_Trinity_Tuxedo_Workshop/HEAD/.gitmodules -------------------------------------------------------------------------------- /GENOME_data/genes.bed: 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