├── LICENSE ├── README.md ├── lib ├── Makefile ├── classification_pretrain │ ├── __init__.py │ ├── class_pretrain_deepscores.py │ └── deepscores_classification_datareader.py ├── datasets │ ├── VOCdevkit-matlab-wrapper │ │ ├── get_voc_opts.m │ │ ├── voc_eval.m │ │ └── xVOCap.m │ ├── __init__.py │ ├── coco.py │ ├── deep_scores.py │ ├── deep_scores_300dpi.py │ ├── deep_scores_ipad.py │ ├── deep_scores_working.py │ ├── dota.py │ ├── ds_utils.py │ ├── factory.py │ ├── fcn_groundtruth.py │ ├── imdb.py │ ├── macrophages.py │ ├── musicma.py │ ├── pascal_voc.py │ ├── test_datasets.py │ └── voc_eval.py ├── main │ ├── .idea │ │ └── other.xml │ ├── __init__.py │ ├── bbox_transform.py │ ├── bounding_boxes.pickle │ ├── check_number_symbols.py │ ├── config_ren.py │ ├── dws_detector.py │ ├── dws_transform.py │ ├── inference.py │ ├── run.sh │ ├── train.py │ └── train_dwd.py ├── models │ ├── RefineNet.py │ ├── UNet.py │ ├── __init__.py │ ├── dwd_net.py │ ├── resnet_utils.py │ ├── resnet_v1.py │ └── unet_utils.py ├── roi_data_layer │ ├── __init__.py │ ├── layer.py │ ├── minibatch.py │ ├── roidb.py │ └── sample_images_for_augmentation.py ├── semseg_pretrain │ ├── __init__.py │ ├── deepscores_semseg_datareader.py │ ├── pascalvoc_semseg_datareader.py │ └── semseg_pretrain.py ├── setup.py └── utils │ ├── .gitignore │ ├── Fast_Queue.py │ ├── TensorflowUtils.py │ ├── __init__.py │ ├── bbox.pyx │ ├── blob.py │ ├── cython_nms.so │ ├── nice_ap_table.py │ ├── nms.py │ ├── nms.pyx │ ├── prefetch_wrapper.py │ ├── prefetch_wrapper_cache.py │ ├── safe_softmax_wrapper.py │ ├── summary_helpers.py │ ├── timer.py │ └── ufarray.py ├── requirements.txt └── visualize.py /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/tuggeluk/DeepWatershedDetection/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: 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