├── .devcontainer ├── ML │ └── devcontainer.json ├── cpp │ └── devcontainer.json ├── python │ └── devcontainer.json └── qiskit │ └── devcontainer.json ├── .gitignore ├── AdvCpp ├── Makefile ├── advanced.cpp └── sorting.cpp ├── AdvDiffEq ├── .ipynb_checkpoints │ ├── 16_Step_12-checkpoint.ipynb │ └── nbody_animate-checkpoint.ipynb ├── 16_Step_12.ipynb ├── README.md ├── figure8.in ├── generate_random_start.py ├── nbody_animate.ipynb └── read_orbit.py ├── ArrayProgramming ├── .ipynb_checkpoints │ └── ArrayProgramming-checkpoint.ipynb ├── ArrayProgramming.ipynb ├── Poisson1d.ipynb └── Speed.ipynb ├── Assignment1 └── README.md ├── Assignment2 ├── Problem3 │ └── lines.txt └── README.md ├── Assignment3 ├── Assignment3.pdf ├── Problem1.ipynb ├── Problem2.ipynb ├── Problem3.ipynb ├── README.md └── swig_code │ ├── Vector2.cpp │ ├── Vector2.h │ ├── Vector2.i │ └── setup_vector2.py ├── Assignment4 ├── Assignment4.pdf ├── README.md ├── chi_square_fit.cpp ├── chi_square_fit.py └── co2_mm_mlo.txt ├── Assignment5 ├── Assignment5.pdf ├── Problem1 │ ├── Problem1.ipynb │ ├── derivatives.h │ ├── integrals.h │ ├── rootfinding.h │ ├── scattering.h │ └── swig │ │ ├── scattering.i │ │ ├── scattering.py │ │ ├── scattering_wrap.cxx │ │ └── setup.py ├── Problem2 │ ├── Problem2.ipynb │ ├── michaelian1998.pdf │ └── tetramers.png ├── Problem3 │ ├── Problem3.ipynb │ └── cube.jpg ├── Problem4 │ ├── Problem4.ipynb │ └── co2_mm_mlo.txt └── README.md ├── Assignment6 ├── Assignment6.pdf ├── Problem1 │ └── Problem1.ipynb ├── Problem2 │ └── Problem2.ipynb ├── Problem3 │ └── Problem3.ipynb ├── Problem4 │ ├── Problem4.ipynb │ ├── wirechamber.pdf │ ├── wirechamber.tex │ ├── wirechamber_2d.pdf │ ├── wirechamber_2d.png │ ├── wirechamber_2d.tex │ ├── wirechamber_3d.pdf │ ├── wirechamber_3d.png │ └── wirechamber_3d.tex └── README.md ├── BVPs ├── bvp.py ├── bvpexample.ipynb ├── kronigpenney.ipynb ├── qmbox.ipynb └── schroedinger.ipynb ├── BioPhys ├── genetic.ipynb ├── genetic_protein.ipynb ├── hodgkin-huxley.ipynb ├── reptation.cpp ├── reptation.h ├── reptation.ipynb ├── sawalk.cpp ├── sawalk.h ├── sawalk.ipynb └── swig │ ├── reptation.i │ ├── sawalk.i │ ├── setup_reptation.py │ └── setup_sawalk.py ├── Blender ├── FFT.blend ├── GPdraw.py └── scattering.blend ├── Calculus ├── .ipynb_checkpoints │ ├── derivatives-checkpoint.ipynb │ ├── integrals-checkpoint.ipynb │ └── rootfinding-checkpoint.ipynb ├── derivatives.h ├── derivatives.ipynb ├── derivatives.py ├── integrals.cc ├── integrals.h ├── integrals.ipynb ├── integrals.py ├── plot_f_r_min.ipynb ├── rootfinding.cc ├── rootfinding.h ├── rootfinding.ipynb ├── rootfinding.py ├── scattering.cpp ├── scattering.h ├── scattering.ipynb ├── scattering_native.py └── swig │ ├── scattering.i │ └── setup.py ├── Catch2 └── catch.hpp ├── DataAnalysis ├── FFT │ ├── .ipynb_checkpoints │ │ └── fft_with_swig-checkpoint.ipynb │ ├── 2Dfft.ipynb │ ├── FFTbenchmark.csv │ ├── SN_m_tot_V2.0.txt │ ├── bilayerMoire.ipynb │ ├── co2_mm_mlo.txt │ ├── fft.py │ ├── fft_filtering.ipynb │ ├── fft_padding.ipynb │ ├── fft_test.ipynb │ ├── fft_windows.ipynb │ ├── fft_with_swig.ipynb │ ├── fire.jpg │ ├── fire_grain.jpg │ ├── fire_grain2.jpg │ ├── lattice.png │ ├── lattice.svg │ ├── monthssn.dat │ ├── our_fft.cpp │ ├── our_fft.hpp │ ├── our_fft.i │ ├── plot_co2.ipynb │ ├── read_co2.py │ ├── read_ssn.py │ ├── setup_our_fft.py │ └── svg2numpy.ipynb └── Fitting │ ├── Davis07_R07_WV07.dat │ ├── Makefile │ ├── README.md │ ├── california_earthquakes_2010_to_2013.csv │ ├── chi2dist.ipynb │ ├── chi_square_fit.py │ ├── hubble.cpp │ ├── hubble.ipynb │ ├── least_squares.hpp │ ├── least_squares.py │ ├── polyfit.ipynb │ ├── quake.cpp │ ├── quake.ipynb │ ├── supernova.cpp │ └── supernova.ipynb ├── DataScience ├── EclipseCategorization.ipynb ├── ExampleNN.ipynb ├── Tutorial - Multiclass Classification.ipynb ├── eclipse_model.pkl ├── kmeans.ipynb ├── regularization.ipynb └── solar.csv ├── Docker ├── .bash_aliases ├── Dockerfile ├── README.md ├── entrypoint.sh └── entrypoint_wfix.sh ├── JupyterExamples ├── .ipynb_checkpoints │ └── example_jupyter-checkpoint.ipynb └── example_jupyter.ipynb ├── LinearAlgebra ├── bvp.ipynb ├── co2_mm_mlo.txt ├── co2_polyfit.ipynb ├── polyfit.py ├── read_co2.py ├── triatomic.ipynb └── wheatstone.ipynb ├── LinuxOverview ├── awk_example.md ├── commandline1.sh ├── sunspot.awk └── sunspot2.awk ├── Makefile ├── MinMax ├── .ipynb_checkpoints │ ├── bfgs-checkpoint.ipynb │ ├── minmax1d-checkpoint.ipynb │ └── nacl-checkpoint.ipynb ├── bfgs.ipynb ├── minmax1d.ipynb └── nacl.ipynb ├── ODEs ├── odes.py ├── pendulum.ipynb ├── pendulum_nonlinear.ipynb ├── planetary.ipynb ├── projectiles.ipynb └── pytree.ipynb ├── PDEs ├── CNN-PDE-eager.ipynb ├── CNN-PDE.ipynb ├── ConvolutionExamples.ipynb ├── ConvolutionPDE.ipynb ├── Laplaceexample.png ├── advection.ipynb ├── burgers.ipynb ├── poisson.ipynb ├── poisson_mg.cpp ├── poisson_mg.h ├── poisson_mg.ipynb ├── swig │ ├── poisson_mg.i │ └── setup.py └── wavepacket.ipynb ├── PythonNetworking ├── advWebServer.py ├── client.ipynb └── server.py ├── QFT ├── CrossSection.cpp ├── CrossSection.h ├── LorentzVector.cpp ├── LorentzVector.h ├── Particle.cpp ├── Particle.h ├── compton.ipynb ├── mstwpdf.cpp ├── mstwpdf.h ├── swig │ ├── qft.i │ └── setup_qft.py └── z_to_ee.ipynb ├── QM ├── dmc.cpp ├── dmc.h ├── dmc.ipynb ├── hydrogen.ipynb ├── pimc.cpp ├── pimc.h ├── pimc.ipynb ├── run_dmc.cpp ├── run_pimc.cpp ├── run_vmc.cpp ├── swig │ ├── dmc.i │ ├── pimc.i │ ├── setup_dmc.py │ ├── setup_pimc.py │ ├── setup_vmc.py │ └── vmc.i ├── vmc.cpp ├── vmc.h └── vmc.ipynb ├── README.md ├── RandomNumbers ├── Makefile ├── disks.ipynb ├── gaussian.h ├── ising.cpp ├── ising.data ├── ising.h ├── ising.ipynb ├── metropolis.h ├── metropolis.ipynb ├── metropolis_tfp.ipynb ├── quadrature.ipynb ├── random_test.ipynb ├── random_walkers.ipynb ├── run_ising.cpp └── swig │ ├── ising.i │ ├── metropolis.i │ ├── setup_ising.py │ └── setup_metropolis.py ├── Requirements ├── ml.txt └── qiskit.txt ├── ReviewCpp ├── BasicExamples │ ├── Makefile │ ├── PythonAnnotations.ipynb │ ├── addition.cc │ ├── addmodule.c++ │ ├── addmodule.cpp │ ├── array_pointer.cpp │ ├── commandline.cc │ ├── conditionals.cc │ ├── ctypes.ipynb │ ├── ctypes_functions.ipynb │ ├── ctypes_libcexample.ipynb │ ├── ctypes_setuptools.ipynb │ ├── datatypeexamples.ipynb │ ├── fibo.cc │ ├── fileio.cc │ ├── fileio_infuncs.cc │ ├── floatcompare.cc │ ├── floatcompare_better.cc │ ├── forloop.cc │ ├── forloop_nested.cc │ ├── func_timing.cpp │ ├── funcscope.cc │ ├── hello.cc │ ├── inputfile.txt │ ├── libcexample.py │ ├── mathexamples.cc │ ├── mixedtypes.cc │ ├── narrowing.cc │ ├── operators.cc │ ├── ptrs.cc │ ├── ptrs_and_funcs.cc │ ├── ptrs_and_funcs.ipynb │ ├── ptrs_and_refs.cc │ ├── ptrs_and_refs.ipynb │ ├── read_cin.cc │ ├── read_commandline.cc │ ├── readlines.cc │ ├── scope.cc │ ├── setup.py │ ├── string.cc │ ├── vector_example.cc │ ├── whileloop.cc │ ├── whileloop_break.cc │ ├── xsquared.cc │ └── xsquared_types.cc ├── ClassExample │ ├── Makefile │ ├── Point.cc │ ├── Point.h │ ├── make_a_point.cc │ ├── points.txt │ ├── read_points_example.cc │ └── read_points_example_strstream.cc ├── InheritanceExample │ ├── Makefile │ ├── Point.cc │ ├── Point.h │ ├── Point3d.cc │ ├── Point3d.h │ └── test_inheritance.cc ├── Maps │ └── maps.cc ├── TemplateExamples │ ├── Makefile │ ├── Point.cc │ ├── Point.h │ ├── Storage.h │ ├── Vector3.h │ ├── make_a_vector.cc │ └── test_storage.cc └── UnitTest │ ├── Makefile │ ├── catch.hpp │ └── hello.cpp ├── ReviewPython ├── EinsteinNotation.ipynb ├── Point.py ├── docstrings │ ├── multiline.ipynb │ └── oneline.py ├── linting │ ├── JupyterCodeStyle.ipynb │ ├── better_hello.py │ └── hello.py ├── matplotlib_example.py ├── matplotlib_examples.ipynb ├── mutabledemo.ipynb ├── mutabledemo.py ├── numpy_example.ipynb ├── numpy_example.py ├── points.txt ├── testpoint.py └── unit-test │ ├── fixtures.py │ ├── fixtures2.py │ ├── math_functions.py │ ├── test_math_functions.py │ └── test_utest1.py ├── SwigExamples ├── example_swig_cpp.ipynb └── swig_example │ ├── example.cpp │ ├── example.hpp │ ├── example.i │ ├── setup.py │ └── test.py ├── Vectorization ├── README.md ├── numpy.ipynb ├── vectorization.cpp └── vectorization.py ├── install_software.sh ├── launchJupyter.sh ├── qiskit ├── APItest.ipynb ├── CHSH.avif ├── CNOTdecomposition.ipynb ├── Decoherence.ipynb ├── MachZehnder.ipynb ├── QiskitCHSH.ipynb ├── QiskitGates.ipynb ├── QiskitSuperdense.ipynb ├── QiskitTeleportation.ipynb ├── README.md ├── alpha-basis.avif ├── beta-basis.avif ├── nonlocal-game-entanglement.avif ├── nonlocal-game.avif ├── qiskit_local.ipynb ├── strategy00.avif ├── strategy01.avif ├── strategy10.avif ├── strategy11.avif └── superdense-coding.avif ├── runDocker.sh ├── runDockerWindows.sh ├── runDocker_wfix.sh └── tf ├── Keras-CO2.ipynb ├── Keras-function.ipynb ├── tfIntro.ipynb ├── tf_MLE.ipynb ├── tf_coinflip.ipynb └── tf_random_test.ipynb 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