├── .github └── workflows │ ├── benchmarking.yml │ ├── docker.yml │ ├── release.yml │ └── tests.yml ├── .gitignore ├── .pre-commit-config.yaml ├── .secrets.baseline ├── CONTRIBUTING.md ├── Cargo.lock ├── Cargo.toml ├── LICENSE ├── README.md ├── SECURITY.md ├── data ├── README.md ├── bam │ ├── htsnexus_test_NA12878.bam │ ├── htsnexus_test_NA12878.bam.bai │ └── htsnexus_test_NA12878.bam.gzi ├── bcf │ ├── sample1-bcbio-cancer.bcf │ ├── sample1-bcbio-cancer.bcf.csi │ ├── sample1-bcbio-cancer.bcf.gzi │ ├── spec-v4.3.bcf │ ├── spec-v4.3.bcf.csi │ └── spec-v4.3.bcf.gzi ├── c4gh │ ├── htsnexus_test_NA12878.bam.bai │ ├── htsnexus_test_NA12878.bam.c4gh │ ├── htsnexus_test_NA12878.cram.c4gh │ ├── htsnexus_test_NA12878.cram.crai │ ├── keys │ │ ├── alice.pub │ │ ├── alice.sec │ │ ├── bob.pub │ │ └── bob.sec │ ├── sample1-bcbio-cancer.bcf.c4gh │ ├── sample1-bcbio-cancer.bcf.csi │ ├── sample1-bcbio-cancer.vcf.gz.c4gh │ ├── sample1-bcbio-cancer.vcf.gz.tbi │ ├── spec-v4.3.bcf.c4gh │ ├── spec-v4.3.bcf.csi │ ├── spec-v4.3.vcf.gz.c4gh │ └── spec-v4.3.vcf.gz.tbi ├── cram │ ├── htsnexus_test_NA12878.cram │ └── htsnexus_test_NA12878.cram.crai ├── events │ ├── event_get.json │ ├── event_parameterized_get.json │ ├── event_parameterized_post.json │ ├── event_parameterized_post_class_header.json │ ├── event_post.json │ └── event_service_info.json └── vcf │ ├── internationalgenomesample.vcf.gz.gzi │ ├── internationalgenomesample.vcf.gz.tbi │ ├── sample1-bcbio-cancer.vcf.gz │ ├── sample1-bcbio-cancer.vcf.gz.gzi │ ├── sample1-bcbio-cancer.vcf.gz.tbi │ ├── spec-v4.3.vcf.gz │ ├── spec-v4.3.vcf.gz.gzi │ └── spec-v4.3.vcf.gz.tbi ├── docker ├── Dockerfile ├── Dockerfile.dockerignore ├── README.md └── examples │ ├── file │ ├── README.md │ └── compose.yml │ └── minio │ ├── README.md │ ├── compose.yml │ └── config.toml ├── htsget-actix ├── CHANGELOG.md ├── Cargo.toml ├── LICENSE ├── README.md ├── benches │ ├── htsget-refserver-config.json │ └── request_benchmarks.rs └── src │ ├── handlers │ ├── get.rs │ ├── mod.rs │ ├── post.rs │ ├── pretty_json.rs │ └── service_info.rs │ ├── lib.rs │ └── main.rs ├── htsget-axum ├── CHANGELOG.md ├── Cargo.toml ├── LICENSE ├── README.md └── src │ ├── error.rs │ ├── handlers │ ├── get.rs │ ├── mod.rs │ ├── post.rs │ └── service_info.rs │ ├── lib.rs │ ├── main.rs │ ├── middleware │ ├── auth.rs │ └── mod.rs │ └── server │ ├── data.rs │ ├── mod.rs │ └── ticket.rs ├── htsget-config ├── CHANGELOG.md ├── Cargo.toml ├── LICENSE ├── README.md ├── docs │ ├── examples │ │ ├── auth.toml │ │ ├── basic.toml │ │ ├── c4gh.toml │ │ ├── default.toml │ │ ├── s3_storage.toml │ │ ├── tls_data_server.toml │ │ ├── tls_ticket_server.toml │ │ └── url_storage.toml │ ├── generate.sh │ └── schemas │ │ └── auth.schema.json └── src │ ├── config │ ├── advanced │ │ ├── allow_guard.rs │ │ ├── auth │ │ │ ├── authorization.rs │ │ │ ├── jwt.rs │ │ │ ├── mod.rs │ │ │ └── response.rs │ │ ├── cors.rs │ │ ├── mod.rs │ │ ├── regex_location.rs │ │ └── url.rs │ ├── data_server.rs │ ├── location.rs │ ├── mod.rs │ ├── parser.rs │ ├── service_info.rs │ └── ticket_server.rs │ ├── encryption_scheme.rs │ ├── error.rs │ ├── http │ ├── client.rs │ └── mod.rs │ ├── lib.rs │ ├── resolver.rs │ ├── storage │ ├── c4gh │ │ ├── header.rs │ │ ├── local.rs │ │ ├── mod.rs │ │ └── secrets_manager.rs │ ├── file.rs │ ├── mod.rs │ ├── s3.rs │ └── url.rs │ └── types.rs ├── htsget-http ├── CHANGELOG.md ├── Cargo.toml ├── LICENSE ├── README.md └── src │ ├── error.rs │ ├── http_core.rs │ ├── lib.rs │ ├── middleware │ ├── auth.rs │ ├── error.rs │ └── mod.rs │ ├── post_request.rs │ ├── query_builder.rs │ └── service_info.rs ├── htsget-lambda ├── CHANGELOG.md ├── Cargo.toml ├── LICENSE ├── README.md └── src │ ├── lib.rs │ └── main.rs ├── htsget-search ├── CHANGELOG.md ├── Cargo.toml ├── LICENSE ├── README.md ├── benches │ └── search_benchmarks.rs └── src │ ├── bam_search.rs │ ├── bcf_search.rs │ ├── cram_search.rs │ ├── from_storage.rs │ ├── lib.rs │ ├── search.rs │ └── vcf_search.rs ├── 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