├── .github ├── scripts │ └── ubuntu_runtime_deps.sh └── workflows │ ├── ci.yml │ └── python-publish.yml ├── .gitignore ├── .readthedocs.yaml ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── COPYRIGHT.txt ├── Examples ├── Background_extraction_demo.gif ├── Behavior_examples_interactive_advanced.gif ├── Behavior_examples_interactive_basic.gif ├── Behavior_examples_non_interactive.gif ├── Categorizer_animal_object_1.gif ├── Categorizer_animal_object_2.gif ├── Categorizer_interactive_advanced.gif ├── Categorizer_interactive_basic.gif ├── Categorizer_multi_individual_1.gif ├── Categorizer_multi_individual_2.gif ├── Categorizer_non_interactive.gif ├── Categorizer_non_posture_1.gif ├── Categorizer_non_posture_2.gif ├── Categorizer_non_social_1.gif ├── Categorizer_non_social_2.gif ├── Categorizer_non_social_3.gif ├── Categorizer_non_social_4.gif ├── Categorizer_wild_animal_1.gif ├── Categorizer_wild_animal_2.gif ├── Extracted_background_0-20.jpg ├── Extracted_background_20-40.jpg ├── Extracted_background_40-60.jpg ├── LabGym_logo.png ├── Larvae.gif ├── Quantify_behavior.jpg └── User_interface.jpg ├── LICENSE.txt ├── LabGym ├── COPYRIGHT.txt ├── NOTICE.txt ├── __init__.py ├── __main__.py ├── analyzebehavior.py ├── analyzebehavior_dt.py ├── assets │ └── icons │ │ ├── labgym.icns │ │ ├── labgym.ico │ │ ├── labgym.png │ │ └── labgym_small.ico ├── categorizer.py ├── central_logging.py ├── config.py ├── detector.py ├── detectors │ └── __init__.py ├── detectron2 │ ├── __init__.py │ ├── checkpoint │ │ ├── __init__.py │ │ ├── c2_model_loading.py │ │ ├── catalog.py │ │ └── detection_checkpoint.py │ ├── config │ │ ├── __init__.py │ │ ├── compat.py │ │ ├── config.py │ │ ├── defaults.py │ │ ├── instantiate.py │ │ └── lazy.py │ ├── data │ │ ├── __init__.py │ │ ├── benchmark.py │ │ ├── build.py │ │ ├── catalog.py │ │ ├── common.py │ │ ├── dataset_mapper.py │ │ ├── datasets │ │ │ ├── __init__.py │ │ │ ├── builtin.py │ │ │ ├── builtin_meta.py │ │ │ ├── cityscapes.py │ │ │ ├── cityscapes_panoptic.py │ │ │ ├── coco.py │ │ │ ├── coco_panoptic.py │ │ │ ├── lvis.py │ │ │ ├── lvis_v0_5_categories.py │ │ │ ├── lvis_v1_categories.py │ │ │ ├── lvis_v1_category_image_count.py │ │ │ ├── pascal_voc.py │ │ │ └── register_coco.py │ │ ├── detection_utils.py │ │ ├── samplers │ │ │ ├── __init__.py │ │ │ ├── distributed_sampler.py │ │ │ └── grouped_batch_sampler.py │ │ └── transforms │ │ │ ├── __init__.py │ │ │ ├── augmentation.py │ │ │ ├── augmentation_impl.py │ │ │ └── transform.py │ ├── engine │ │ ├── __init__.py │ │ ├── defaults.py │ │ ├── hooks.py │ │ ├── launch.py │ │ └── train_loop.py │ ├── evaluation │ │ ├── __init__.py │ │ ├── cityscapes_evaluation.py │ │ ├── coco_evaluation.py │ │ ├── evaluator.py │ │ ├── fast_eval_api.py │ │ ├── lvis_evaluation.py │ │ ├── panoptic_evaluation.py │ │ ├── pascal_voc_evaluation.py │ │ ├── rotated_coco_evaluation.py │ │ ├── sem_seg_evaluation.py │ │ └── testing.py │ ├── export │ │ ├── __init__.py │ │ ├── api.py │ │ ├── c10.py │ │ ├── caffe2_export.py │ │ ├── caffe2_inference.py │ │ ├── caffe2_modeling.py │ │ ├── caffe2_patch.py │ │ ├── flatten.py │ │ ├── shared.py │ │ ├── torchscript.py │ │ └── torchscript_patch.py │ ├── layers │ │ ├── __init__.py │ │ ├── aspp.py │ │ ├── batch_norm.py │ │ ├── blocks.py │ │ ├── deform_conv.py │ │ ├── losses.py │ │ ├── mask_ops.py │ │ ├── nms.py │ │ ├── roi_align.py │ │ ├── roi_align_rotated.py │ │ ├── rotated_boxes.py │ │ ├── shape_spec.py │ │ └── wrappers.py │ ├── model_zoo │ │ ├── __init__.py │ │ ├── configs │ │ │ ├── Base-RCNN-C4.yaml │ │ │ ├── Base-RCNN-DilatedC5.yaml │ │ │ ├── Base-RCNN-FPN.yaml │ │ │ ├── Base-RetinaNet.yaml │ │ │ ├── COCO-Detection │ │ │ │ ├── fast_rcnn_R_50_FPN_1x.yaml │ │ │ │ ├── faster_rcnn_R_101_C4_3x.yaml │ │ │ │ ├── faster_rcnn_R_101_DC5_3x.yaml │ │ │ │ ├── faster_rcnn_R_101_FPN_3x.yaml │ │ │ │ ├── faster_rcnn_R_50_C4_1x.yaml │ │ │ │ ├── faster_rcnn_R_50_C4_3x.yaml │ │ │ │ ├── faster_rcnn_R_50_DC5_1x.yaml │ │ │ │ ├── faster_rcnn_R_50_DC5_3x.yaml │ │ │ │ ├── faster_rcnn_R_50_FPN_1x.yaml │ │ │ │ ├── faster_rcnn_R_50_FPN_3x.yaml │ │ │ │ ├── faster_rcnn_X_101_32x8d_FPN_3x.yaml │ │ │ │ ├── fcos_R_50_FPN_1x.py │ │ │ │ ├── retinanet_R_101_FPN_3x.yaml │ │ │ │ ├── retinanet_R_50_FPN_1x.py │ │ │ │ ├── retinanet_R_50_FPN_1x.yaml │ │ │ │ ├── retinanet_R_50_FPN_3x.yaml │ │ │ │ ├── rpn_R_50_C4_1x.yaml │ │ │ │ └── rpn_R_50_FPN_1x.yaml │ │ │ ├── COCO-InstanceSegmentation │ │ │ │ ├── mask_rcnn_R_101_C4_3x.yaml │ │ │ │ ├── mask_rcnn_R_101_DC5_3x.yaml │ │ │ │ ├── mask_rcnn_R_101_FPN_3x.yaml │ │ │ │ ├── mask_rcnn_R_50_C4_1x.py │ │ │ │ ├── mask_rcnn_R_50_C4_1x.yaml │ │ │ │ ├── mask_rcnn_R_50_C4_3x.yaml │ │ │ │ ├── mask_rcnn_R_50_DC5_1x.yaml │ │ │ │ ├── mask_rcnn_R_50_DC5_3x.yaml │ │ │ │ ├── mask_rcnn_R_50_FPN_1x.py │ │ │ │ ├── mask_rcnn_R_50_FPN_1x.yaml │ │ │ │ ├── mask_rcnn_R_50_FPN_1x_giou.yaml │ │ │ │ ├── mask_rcnn_R_50_FPN_3x.yaml │ │ │ │ ├── mask_rcnn_X_101_32x8d_FPN_3x.yaml │ │ │ │ ├── mask_rcnn_regnetx_4gf_dds_fpn_1x.py │ │ │ │ └── mask_rcnn_regnety_4gf_dds_fpn_1x.py │ │ │ ├── COCO-Keypoints │ │ │ │ ├── Base-Keypoint-RCNN-FPN.yaml │ │ │ │ ├── keypoint_rcnn_R_101_FPN_3x.yaml │ │ │ │ ├── keypoint_rcnn_R_50_FPN_1x.py │ │ │ │ ├── keypoint_rcnn_R_50_FPN_1x.yaml │ │ │ │ ├── keypoint_rcnn_R_50_FPN_3x.yaml │ │ │ │ └── keypoint_rcnn_X_101_32x8d_FPN_3x.yaml │ │ │ ├── COCO-PanopticSegmentation │ │ │ │ ├── Base-Panoptic-FPN.yaml │ │ │ │ ├── panoptic_fpn_R_101_3x.yaml │ │ │ │ ├── panoptic_fpn_R_50_1x.py │ │ │ │ ├── panoptic_fpn_R_50_1x.yaml │ │ │ │ └── panoptic_fpn_R_50_3x.yaml │ │ │ ├── Cityscapes │ │ │ │ └── mask_rcnn_R_50_FPN.yaml │ │ │ ├── Detectron1-Comparisons │ │ │ │ ├── faster_rcnn_R_50_FPN_noaug_1x.yaml │ │ │ │ ├── keypoint_rcnn_R_50_FPN_1x.yaml │ │ │ │ └── mask_rcnn_R_50_FPN_noaug_1x.yaml │ │ │ ├── LVISv0.5-InstanceSegmentation │ │ │ │ ├── mask_rcnn_R_101_FPN_1x.yaml │ │ │ │ ├── mask_rcnn_R_50_FPN_1x.yaml │ │ │ │ └── mask_rcnn_X_101_32x8d_FPN_1x.yaml │ │ │ ├── LVISv1-InstanceSegmentation │ │ │ │ ├── mask_rcnn_R_101_FPN_1x.yaml │ │ │ │ ├── mask_rcnn_R_50_FPN_1x.yaml │ │ │ │ └── mask_rcnn_X_101_32x8d_FPN_1x.yaml │ │ │ ├── Misc │ │ │ │ ├── cascade_mask_rcnn_R_50_FPN_1x.yaml │ │ │ │ ├── cascade_mask_rcnn_R_50_FPN_3x.yaml │ │ │ │ ├── cascade_mask_rcnn_X_152_32x8d_FPN_IN5k_gn_dconv.yaml │ │ │ │ ├── mask_rcnn_R_50_FPN_1x_cls_agnostic.yaml │ │ │ │ ├── mask_rcnn_R_50_FPN_1x_dconv_c3-c5.yaml │ │ │ │ ├── mask_rcnn_R_50_FPN_3x_dconv_c3-c5.yaml │ │ │ │ ├── mask_rcnn_R_50_FPN_3x_gn.yaml │ │ │ │ ├── mask_rcnn_R_50_FPN_3x_syncbn.yaml │ │ │ │ ├── mmdet_mask_rcnn_R_50_FPN_1x.py │ │ │ │ ├── panoptic_fpn_R_101_dconv_cascade_gn_3x.yaml │ │ │ │ ├── scratch_mask_rcnn_R_50_FPN_3x_gn.yaml │ │ │ │ ├── scratch_mask_rcnn_R_50_FPN_9x_gn.yaml │ │ │ │ ├── scratch_mask_rcnn_R_50_FPN_9x_syncbn.yaml │ │ │ │ ├── semantic_R_50_FPN_1x.yaml │ │ │ │ └── torchvision_imagenet_R_50.py │ │ │ ├── PascalVOC-Detection │ │ │ │ ├── faster_rcnn_R_50_C4.yaml │ │ │ │ └── faster_rcnn_R_50_FPN.yaml │ │ │ ├── common │ │ │ │ ├── coco_schedule.py │ │ │ │ ├── data │ │ │ │ │ ├── coco.py │ │ │ │ │ ├── coco_keypoint.py │ │ │ │ │ ├── coco_panoptic_separated.py │ │ │ │ │ └── constants.py │ │ │ │ ├── models │ │ │ │ │ ├── cascade_rcnn.py │ │ │ │ │ ├── fcos.py │ │ │ │ │ ├── keypoint_rcnn_fpn.py │ │ │ │ │ ├── mask_rcnn_c4.py │ │ │ │ │ ├── mask_rcnn_fpn.py │ │ │ │ │ ├── mask_rcnn_vitdet.py │ │ │ │ │ ├── panoptic_fpn.py │ │ │ │ │ └── retinanet.py │ │ │ │ ├── optim.py │ │ │ │ └── train.py │ │ │ ├── new_baselines │ │ │ │ ├── mask_rcnn_R_101_FPN_100ep_LSJ.py │ │ │ │ ├── mask_rcnn_R_101_FPN_200ep_LSJ.py │ │ │ │ ├── mask_rcnn_R_101_FPN_400ep_LSJ.py │ │ │ │ ├── mask_rcnn_R_50_FPN_100ep_LSJ.py │ │ │ │ ├── mask_rcnn_R_50_FPN_200ep_LSJ.py │ │ │ │ ├── mask_rcnn_R_50_FPN_400ep_LSJ.py │ │ │ │ ├── mask_rcnn_R_50_FPN_50ep_LSJ.py │ │ │ │ ├── mask_rcnn_regnetx_4gf_dds_FPN_100ep_LSJ.py │ │ │ │ ├── mask_rcnn_regnetx_4gf_dds_FPN_200ep_LSJ.py │ │ │ │ ├── mask_rcnn_regnetx_4gf_dds_FPN_400ep_LSJ.py │ │ │ │ ├── mask_rcnn_regnety_4gf_dds_FPN_100ep_LSJ.py │ │ │ │ ├── mask_rcnn_regnety_4gf_dds_FPN_200ep_LSJ.py │ │ │ │ └── mask_rcnn_regnety_4gf_dds_FPN_400ep_LSJ.py │ │ │ └── quick_schedules │ │ │ │ ├── cascade_mask_rcnn_R_50_FPN_inference_acc_test.yaml │ │ │ │ ├── cascade_mask_rcnn_R_50_FPN_instant_test.yaml │ │ │ │ ├── fast_rcnn_R_50_FPN_inference_acc_test.yaml │ │ │ │ ├── fast_rcnn_R_50_FPN_instant_test.yaml │ │ │ │ ├── keypoint_rcnn_R_50_FPN_inference_acc_test.yaml │ │ │ │ ├── keypoint_rcnn_R_50_FPN_instant_test.yaml │ │ │ │ ├── keypoint_rcnn_R_50_FPN_normalized_training_acc_test.yaml │ │ │ │ ├── keypoint_rcnn_R_50_FPN_training_acc_test.yaml │ │ │ │ ├── mask_rcnn_R_50_C4_GCV_instant_test.yaml │ │ │ │ ├── mask_rcnn_R_50_C4_inference_acc_test.yaml │ │ │ │ ├── mask_rcnn_R_50_C4_instant_test.yaml │ │ │ │ ├── mask_rcnn_R_50_C4_training_acc_test.yaml │ │ │ │ ├── mask_rcnn_R_50_DC5_inference_acc_test.yaml │ │ │ │ ├── mask_rcnn_R_50_FPN_inference_acc_test.yaml │ │ │ │ ├── mask_rcnn_R_50_FPN_instant_test.yaml │ │ │ │ ├── mask_rcnn_R_50_FPN_pred_boxes_training_acc_test.yaml │ │ │ │ ├── mask_rcnn_R_50_FPN_training_acc_test.yaml │ │ │ │ ├── panoptic_fpn_R_50_inference_acc_test.yaml │ │ │ │ ├── panoptic_fpn_R_50_instant_test.yaml │ │ │ │ ├── panoptic_fpn_R_50_training_acc_test.yaml │ │ │ │ ├── retinanet_R_50_FPN_inference_acc_test.yaml │ │ │ │ ├── retinanet_R_50_FPN_instant_test.yaml │ │ │ │ ├── rpn_R_50_FPN_inference_acc_test.yaml │ │ │ │ ├── rpn_R_50_FPN_instant_test.yaml │ │ │ │ ├── semantic_R_50_FPN_inference_acc_test.yaml │ │ │ │ ├── semantic_R_50_FPN_instant_test.yaml │ │ │ │ └── semantic_R_50_FPN_training_acc_test.yaml │ │ └── model_zoo.py │ ├── modeling │ │ ├── __init__.py │ │ ├── anchor_generator.py │ │ ├── backbone │ │ │ ├── __init__.py │ │ │ ├── backbone.py │ │ │ ├── build.py │ │ │ ├── fpn.py │ │ │ ├── mvit.py │ │ │ ├── regnet.py │ │ │ ├── resnet.py │ │ │ ├── swin.py │ │ │ ├── utils.py │ │ │ └── vit.py │ │ ├── box_regression.py │ │ ├── matcher.py │ │ ├── meta_arch │ │ │ ├── __init__.py │ │ │ ├── build.py │ │ │ ├── dense_detector.py │ │ │ ├── fcos.py │ │ │ ├── panoptic_fpn.py │ │ │ ├── rcnn.py │ │ │ ├── retinanet.py │ │ │ └── semantic_seg.py │ │ ├── mmdet_wrapper.py │ │ ├── poolers.py │ │ ├── postprocessing.py │ │ ├── proposal_generator │ │ │ ├── __init__.py │ │ │ ├── build.py │ │ │ ├── proposal_utils.py │ │ │ ├── rpn.py │ │ │ └── rrpn.py │ │ ├── roi_heads │ │ │ ├── __init__.py │ │ │ ├── box_head.py │ │ │ ├── cascade_rcnn.py │ │ │ ├── fast_rcnn.py │ │ │ ├── keypoint_head.py │ │ │ ├── mask_head.py │ │ │ ├── roi_heads.py │ │ │ └── rotated_fast_rcnn.py │ │ ├── sampling.py │ │ └── test_time_augmentation.py │ ├── projects │ │ ├── __init__.py │ │ ├── deeplab │ │ │ ├── __init__.py │ │ │ ├── build_solver.py │ │ │ ├── config.py │ │ │ ├── loss.py │ │ │ ├── lr_scheduler.py │ │ │ ├── resnet.py │ │ │ └── semantic_seg.py │ │ ├── panoptic_deeplab │ │ │ ├── __init__.py │ │ │ ├── config.py │ │ │ ├── dataset_mapper.py │ │ │ ├── panoptic_seg.py │ │ │ ├── post_processing.py │ │ │ └── target_generator.py │ │ └── point_rend │ │ │ ├── __init__.py │ │ │ ├── color_augmentation.py │ │ │ ├── config.py │ │ │ ├── mask_head.py │ │ │ ├── point_features.py │ │ │ ├── point_head.py │ │ │ ├── roi_heads.py │ │ │ └── semantic_seg.py │ ├── solver │ │ ├── __init__.py │ │ ├── build.py │ │ └── lr_scheduler.py │ ├── structures │ │ ├── __init__.py │ │ ├── boxes.py │ │ ├── image_list.py │ │ ├── instances.py │ │ ├── keypoints.py │ │ ├── masks.py │ │ └── rotated_boxes.py │ ├── tracking │ │ ├── __init__.py │ │ ├── base_tracker.py │ │ ├── bbox_iou_tracker.py │ │ ├── hungarian_tracker.py │ │ ├── iou_weighted_hungarian_bbox_iou_tracker.py │ │ ├── utils.py │ │ └── vanilla_hungarian_bbox_iou_tracker.py │ └── utils │ │ ├── __init__.py │ │ ├── analysis.py │ │ ├── collect_env.py │ │ ├── colormap.py │ │ ├── comm.py │ │ ├── develop.py │ │ ├── env.py │ │ ├── events.py │ │ ├── file_io.py │ │ ├── logger.py │ │ ├── memory.py │ │ ├── registry.py │ │ ├── serialize.py │ │ ├── testing.py │ │ ├── tracing.py │ │ ├── video_visualizer.py │ │ └── visualizer.py ├── gui_analyzer.py ├── gui_app_icon.py ├── gui_categorizer.py ├── gui_detector.py ├── gui_main.py ├── gui_preprocessor.py ├── gui_utils.py ├── logging.yaml ├── minedata.py ├── models │ └── __init__.py ├── myargparse.py ├── mylogging.py ├── mypkg_resources.py ├── mywx.py ├── probes.py ├── registration.py ├── tests │ ├── INIT.sh │ ├── Notes.importtime.txt │ ├── Notes.opencv-python-and-coverage-warnings.txt │ ├── __init__.py │ ├── coveragerc │ ├── exitstatus.py │ ├── pylint.Notes.txt │ ├── pylint.sh │ ├── pylintrc │ ├── pylintrc- │ ├── pytest.ini │ ├── test___main__.py │ ├── test_central_logging.py │ ├── test_config.py │ ├── test_config │ │ └── bad.yaml │ ├── test_myargparse.py │ ├── test_mylogging.py │ ├── test_mypkg_resources.py │ ├── test_probes.py │ ├── test_probes │ │ ├── cacert.fouled.pem │ │ └── cacert.pem │ ├── test_registration.py │ ├── test_registration │ │ └── registration.yaml │ └── tmp.pylint │ │ └── .gitkeep └── tools.py ├── LabGym_Zoo.md ├── LabGym_extended_user_guide.pdf ├── LabGym_practical_guide.pdf ├── NOTICE.txt ├── README.md ├── docs ├── Makefile ├── _static │ ├── github-issues-tab-screenshot.png │ ├── github-new-issue-screenshot.png │ ├── vs-build-tools-installer.png │ └── vs-build-tools-website.png ├── changelog.md ├── conf.py ├── contributing │ ├── developing.md │ ├── docs.md │ ├── index.md │ ├── internal.md │ └── setup.md ├── features │ ├── analysis.md │ ├── index.md │ ├── preprocessing.md │ └── training.md ├── index.md ├── installation │ ├── index.md │ ├── linux.md │ ├── macos.md │ └── windows.md ├── issues.md ├── make.bat ├── requirements.txt ├── walkthroughs │ ├── background-subtraction.md │ ├── detector.md │ ├── index.md │ └── static-image-analysis.md └── what-can-labgym-do.md ├── noxfile.py ├── pyproject.toml └── tests ├── __init__.py ├── test_load.py └── test_main.py /.github/scripts/ubuntu_runtime_deps.sh: 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