├── .gitattributes ├── .github ├── actions │ ├── install-with-conda │ │ └── action.yml │ ├── install-with-poetry │ │ └── action.yml │ └── push-doc │ │ └── action.yml └── workflows │ ├── docs.yml │ └── main.yml ├── .gitignore ├── .gitlab-ci.yml ├── LICENSE ├── README.md ├── docs ├── Makefile ├── _static │ ├── ETSpy_logo.png │ ├── ETSpy_logo.svg │ ├── ETSpy_logo_trans.png │ ├── custom_css.css │ ├── favicon-128x128.png │ ├── favicon-16x16.png │ ├── favicon-256x256.png │ ├── favicon-32x32.png │ ├── favicon-512x512.png │ ├── favicon-64x64.png │ ├── icon.png │ ├── icon.svg │ └── jquery.leaveNotice-nist.js ├── _templates │ └── layout.html ├── api.md ├── conf.py ├── development.md ├── examples │ └── etspy_demo.ipynb ├── index.rst └── make.bat ├── etspy ├── __init__.py ├── align.py ├── api.py ├── base.py ├── datasets.py ├── hyperspy_extension.yaml ├── io.py ├── recon.py ├── simulation.py ├── tests │ ├── .coveragerc-cuda │ ├── .coveragerc-nocuda │ ├── __init__.py │ ├── test_align.py │ ├── test_base.py │ ├── test_cuda.py │ ├── test_data │ │ ├── Catalyst3DModel_TiltSeries180.hdf5 │ │ ├── DM_Series_Test │ │ │ ├── BF_001.dm3 │ │ │ ├── BF_002.dm3 │ │ │ └── BF_003.dm3 │ │ ├── HAADF.ali │ │ ├── HAADF.dm3 │ │ ├── HAADF.mrc │ │ ├── HAADF.rawtlt │ │ ├── HAADF.txt │ │ ├── HAADF_Aligned.hdf5 │ │ ├── SerialEM_MultiTilt_Test │ │ │ ├── test_000.mdoc │ │ │ └── test_000.mrc │ │ └── SerialEM_Multiframe_Test │ │ │ ├── test_000.mdoc │ │ │ ├── test_000.mrc │ │ │ ├── test_000.mrc.mdoc │ │ │ ├── test_001.mdoc │ │ │ ├── test_001.mrc │ │ │ ├── test_001.mrc.mdoc │ │ │ ├── test_002.mdoc │ │ │ ├── test_002.mrc │ │ │ └── test_002.mrc.mdoc │ ├── test_datasets.py │ ├── test_io.py │ ├── test_recon.py │ ├── test_simulation.py │ ├── test_utils.py │ └── test_version.py └── utils.py ├── poetry.lock ├── pyproject.toml ├── resources ├── ETSpy_logo.svg ├── etspy-banner-dark.svg ├── etspy-banner-light.svg ├── etspy-dev.yml ├── etspy-gpu-dev.yml ├── etspy-gpu.yml └── etspy.yml └── run_tests.sh /.gitattributes: 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