├── .gitignore ├── .hgtags ├── AUTHORS.md ├── CITATION.cff ├── LICENSE.md ├── README.md ├── docs ├── Makefile ├── README.md ├── _static │ ├── docstring_main_block_formatting.png │ ├── docstring_multiline_args.png │ ├── docstring_multiline_main_block.png │ ├── docstring_multiline_multiple_returns.png │ ├── docstring_multiline_single_return.png │ ├── docstring_multiple_returns.png │ ├── tutorial_1.png │ ├── tutorial_10.png │ ├── tutorial_2.png │ ├── tutorial_3.png │ ├── tutorial_4_a.png │ ├── tutorial_4_b.png │ ├── tutorial_5_a.png │ ├── tutorial_5_b.png │ ├── tutorial_5_c.png │ ├── tutorial_5_d.png │ ├── tutorial_6.mp4 │ ├── tutorial_8_a.png │ ├── tutorial_8_b.png │ ├── tutorial_8_c.png │ ├── tutorial_8_d.png │ ├── tutorial_9_cross_section.png │ └── tutorial_9_geometry.png ├── conf.py ├── contributing │ ├── adding_models.rst │ ├── adding_time_schemes.rst │ ├── contributor_guidelines.rst │ ├── example_code.rst │ └── index.rst ├── getting_started │ ├── CHANGELOG.rst │ ├── getting_help.rst │ ├── index.rst │ ├── installation_guide.rst │ └── user_interface.rst ├── helpers │ ├── Using Gmsh with NGSolve.rst │ ├── Using Sphinx.rst │ ├── index.rst │ └── writing_docstrings.rst ├── index.rst ├── mathematical_notes │ ├── index.rst │ ├── models.rst │ └── time_discretization_schemes.rst ├── source │ ├── modules.rst │ ├── opencmp.config_functions.rst │ ├── opencmp.controllers.rst │ ├── opencmp.diffuse_interface.rst │ ├── opencmp.helpers.rst │ ├── opencmp.models.rst │ ├── opencmp.rst │ ├── opencmp.solvers.adaptive_transient_solvers.rst │ └── opencmp.solvers.rst └── tutorials │ ├── example_config.rst │ ├── index.rst │ ├── syntax.rst │ ├── tutorial_1.rst │ ├── tutorial_10.rst │ ├── tutorial_2.rst │ ├── tutorial_3.rst │ ├── tutorial_4.rst │ ├── tutorial_5.rst │ ├── tutorial_6.rst │ ├── tutorial_7.rst │ ├── tutorial_8.rst │ └── tutorial_9.rst ├── examples ├── Control │ ├── bc_dir │ │ └── bc_config │ ├── config │ ├── control_dir │ │ └── config_1 │ ├── ic_dir │ │ └── ic_config │ ├── model_dir │ │ └── model_config │ ├── ref_sol_dir │ │ └── ref_sol_config │ └── unit_square_coarse.vol ├── INS │ ├── bc_dir │ │ └── bc_config │ ├── coarse_large_square_4bcs.vol │ ├── config │ ├── ic_dir │ │ └── ic_config │ ├── model_dir │ │ └── model_config │ └── ref_sol_dir │ │ └── ref_sol_config ├── MCINS │ ├── bc_dir │ │ └── bc_config │ ├── config │ ├── ic_dir │ │ └── ic_config │ ├── model_dir │ │ └── model_config │ ├── ref_sol_dir │ │ └── ref_sol_config │ └── unit_square_coarse.vol ├── Poisson │ ├── bc_dir │ │ └── bc_config │ ├── config │ ├── ic_dir │ │ └── ic_config │ ├── model_dir │ │ └── model_config │ ├── ref_sol_dir │ │ └── ref_sol_config │ └── unit_square_coarse.vol ├── Stokes │ ├── bc_dir │ │ └── bc_config │ ├── channel_3bcs.vol │ ├── config │ ├── ic_dir │ │ └── ic_config │ ├── model_dir │ │ └── model_config │ └── ref_sol_dir │ │ └── ref_sol_config ├── UI │ ├── bc_dir │ │ └── bc_config │ ├── config │ ├── ic_dir │ │ └── ic_config │ ├── model_dir │ │ └── model_config │ └── ref_sol_dir │ │ └── ref_sol_config ├── tutorial_1 │ ├── bc_dir │ │ └── bc_config │ ├── config │ ├── ic_dir │ │ └── ic_config │ ├── model_dir │ │ └── model_config │ ├── ref_sol_dir │ │ └── ref_sol_config │ └── unit_square_4bcs.vol ├── tutorial_10 │ ├── bc_dir │ │ └── bc_config │ ├── config │ ├── config_DG │ ├── config_DG_IC │ ├── config_IC │ ├── flow_past_cyl_3d.geo │ ├── flow_past_cyl_3d.msh │ ├── ic_dir │ │ └── ic_config │ ├── model_dir │ │ └── model_config │ └── ref_sol_dir │ │ └── ref_sol_config ├── tutorial_2 │ ├── bc_dir │ │ └── bc_config │ ├── coarse_unit_square_1bc.msh │ ├── config │ ├── ic_dir │ │ └── ic_config │ ├── model_dir │ │ └── model_config │ └── ref_sol_dir │ │ └── ref_sol_config ├── tutorial_3 │ ├── bc_dir │ │ └── bc_config │ ├── channel_3bcs.vol │ ├── config │ ├── ic_dir │ │ └── ic_config │ ├── model_dir │ │ └── model_config │ └── ref_sol_dir │ │ └── ref_sol_config ├── tutorial_4 │ ├── bc_dir │ │ └── bc_config │ ├── coarse_channel_3bcs.vol │ ├── config │ ├── ic_dir │ │ └── ic_config │ ├── model_dir │ │ └── model_config │ └── ref_sol_dir │ │ └── ref_sol_config ├── tutorial_5 │ ├── bc_dir │ │ └── bc_config │ ├── coarse_channel_3bcs.vol │ ├── config │ ├── ic_dir │ │ └── ic_config │ ├── model_dir │ │ └── model_config │ └── ref_sol_dir │ │ └── ref_sol_config ├── tutorial_6 │ ├── bc_dir │ │ └── bc_config │ ├── channel_w_cyl.vol │ ├── config │ ├── config_IC │ ├── ic_dir │ │ └── ic_config │ ├── model_dir │ │ └── model_config │ └── ref_sol_dir │ │ └── ref_sol_config ├── tutorial_7 │ ├── bc_dir │ │ └── bc_config │ ├── channel_w_cyl.vol │ ├── config │ ├── config_IC │ ├── ic_dir │ │ └── ic_config │ ├── model_dir │ │ └── model_config │ └── ref_sol_dir │ │ └── ref_sol_config ├── tutorial_8a │ ├── bc_dir │ │ └── bc_config │ ├── config │ ├── convert.py │ ├── ic_dir │ │ └── ic_config │ ├── model_dir │ │ └── model_config │ ├── reaction.vol │ └── ref_sol_dir │ │ └── ref_sol_config ├── tutorial_8b │ ├── bc_dir │ │ └── bc_config │ ├── config │ ├── config_IC │ ├── convert.py │ ├── ic_dir │ │ └── ic_config │ ├── model_dir │ │ └── model_config │ ├── reaction.vol │ └── ref_sol_dir │ │ └── ref_sol_config └── tutorial_9 │ ├── bc_dir │ └── bc_config │ ├── config │ ├── dim_dir │ ├── bc_dir │ │ ├── bottom_bc.sol │ │ ├── dim_bc_config │ │ └── led_bottom.msh │ ├── dim_config │ ├── led.stl │ └── ng.ini │ ├── ic_dir │ └── ic_config │ ├── model_dir │ └── model_config │ ├── ref_sol_dir │ └── ref_sol_config │ └── visualization.py ├── opencmp ├── __init__.py ├── __main__.py ├── config_functions │ ├── __init__.py │ ├── base_config_functions.py │ ├── boundary_conditions.py │ ├── controller_functions.py │ ├── expanded_config_parser.py │ ├── initial_conditions.py │ ├── load_config.py │ ├── model_functions.py │ ├── parse_arithmetic.py │ └── reference_solutions.py ├── controllers │ ├── __init__.py │ ├── base_controller.py │ ├── controller_group.py │ ├── misc.py │ └── pid_controller.py ├── diffuse_interface │ ├── __init__.py │ ├── dim.py │ ├── interface.py │ ├── mesh_helpers.py │ └── mesh_quality_metrics.py ├── entry_points.py ├── helpers │ ├── __init__.py │ ├── dg.py │ ├── error.py │ ├── io.py │ ├── math.py │ ├── mesh.py │ ├── misc.py │ ├── ngsolve_.py │ ├── saving.py │ └── testing.py ├── models │ ├── __init__.py │ ├── base_model.py │ ├── ins.py │ ├── ins_dim.py │ ├── misc.py │ ├── multi_component_ins.py │ ├── poisson.py │ ├── poisson_dim.py │ ├── stokes.py │ └── stokes_dim.py ├── post_processing │ ├── __init__.py │ ├── error_analysis.py │ └── output_conversions.py ├── run.py └── solvers │ ├── __init__.py │ ├── adaptive_transient_solvers │ ├── __init__.py │ ├── adaptive_IMEX.py │ ├── adaptive_three_step.py │ ├── adaptive_two_step.py │ ├── base_adaptive_transient_RK.py │ └── base_adaptive_transient_multistep.py │ ├── base_solver.py │ ├── misc.py │ ├── stationary.py │ ├── time_integration_schemes.py │ ├── transient_RK.py │ └── transient_multistep.py ├── publications └── 2108_JOSS │ ├── cover_letter.txt │ ├── images │ ├── tutorial_10_combined.png │ ├── tutorial_10_side_view.png │ ├── tutorial_10_streamlines.png │ ├── tutorial_10_top_view.png │ ├── tutorial_8_results_3s_a.png │ ├── tutorial_8_results_3s_b.png │ ├── tutorial_8_results_3s_combined.png │ ├── tutorial_9_combined.png │ ├── tutorial_9_cross_section.png │ ├── tutorial_9_geometry.png │ ├── user_interface.pdf │ ├── user_interface.svg │ └── uw_logo.png │ ├── paper.bib │ └── paper.md ├── pyproject.toml ├── pytests ├── README.md ├── config_functions │ ├── example_config │ ├── test_base_config_functions.py │ └── test_load_config.py ├── conftest.py ├── full_system │ ├── control │ │ ├── pid_poisson_1d │ │ │ ├── bc_dir │ │ │ │ └── bc_config │ │ │ ├── config │ │ │ ├── control_dir │ │ │ │ └── config_1 │ │ │ ├── ic_dir │ │ │ │ └── ic_config │ │ │ ├── model_dir │ │ │ │ └── model_config │ │ │ └── ref_sol_dir │ │ │ │ └── ref_sol_config │ │ └── test_control.py │ ├── dim │ │ ├── dim_poisson_1 │ │ │ ├── bc_dir │ │ │ │ └── bc_config │ │ │ ├── config │ │ │ ├── dim_dir │ │ │ │ ├── bc_dir │ │ │ │ │ └── dim_bc_config │ │ │ │ └── dim_config │ │ │ ├── ic_dir │ │ │ │ └── ic_config │ │ │ ├── model_dir │ │ │ │ └── model_config │ │ │ └── ref_sol_dir │ │ │ │ └── ref_sol_config │ │ ├── dim_poisson_2 │ │ │ ├── bc_dir │ │ │ │ └── bc_config │ │ │ ├── config │ │ │ ├── dim_dir │ │ │ │ ├── bc_dir │ │ │ │ │ ├── bottom_mask.sol │ │ │ │ │ ├── dim_bc_config │ │ │ │ │ └── top_mask.sol │ │ │ │ ├── dim_config │ │ │ │ ├── mesh.vol │ │ │ │ └── phi.sol │ │ │ ├── ic_dir │ │ │ │ └── ic_config │ │ │ ├── model_dir │ │ │ │ └── model_config │ │ │ └── ref_sol_dir │ │ │ │ └── ref_sol_config │ │ ├── dim_poisson_3 │ │ │ ├── bc_dir │ │ │ │ └── bc_config │ │ │ ├── config │ │ │ ├── dim_dir │ │ │ │ ├── bc_dir │ │ │ │ │ └── dim_bc_config │ │ │ │ └── dim_config │ │ │ ├── ic_dir │ │ │ │ └── ic_config │ │ │ ├── model_dir │ │ │ │ └── model_config │ │ │ └── ref_sol_dir │ │ │ │ └── ref_sol_config │ │ ├── dim_poisson_4 │ │ │ ├── bc_dir │ │ │ │ └── bc_config │ │ │ ├── config │ │ │ ├── dim_dir │ │ │ │ ├── bc_dir │ │ │ │ │ └── dim_bc_config │ │ │ │ ├── dim_1 │ │ │ │ ├── dim_2 │ │ │ │ └── dim_config │ │ │ ├── ic_dir │ │ │ │ └── ic_config │ │ │ ├── model_dir │ │ │ │ └── model_config │ │ │ └── ref_sol_dir │ │ │ │ └── ref_sol_config │ │ ├── dim_poisson_5 │ │ │ ├── bc_dir │ │ │ │ └── bc_config │ │ │ ├── config │ │ │ ├── dim_dir │ │ │ │ ├── bc_dir │ │ │ │ │ └── dim_bc_config │ │ │ │ └── dim_config │ │ │ ├── ic_dir │ │ │ │ └── ic_config │ │ │ ├── model_dir │ │ │ │ └── model_config │ │ │ └── ref_sol_dir │ │ │ │ └── ref_sol_config │ │ ├── dim_poisson_6 │ │ │ ├── bc_dir │ │ │ │ └── bc_config │ │ │ ├── config │ │ │ ├── dim_dir │ │ │ │ ├── bc_dir │ │ │ │ │ └── dim_bc_config │ │ │ │ └── dim_config │ │ │ ├── ic_dir │ │ │ │ └── ic_config │ │ │ ├── model_dir │ │ │ │ └── model_config │ │ │ └── ref_sol_dir │ │ │ │ └── ref_sol_config │ │ ├── dim_stokes_1 │ │ │ ├── bc_dir │ │ │ │ └── bc_config │ │ │ ├── config │ │ │ ├── dim_dir │ │ │ │ ├── bc_dir │ │ │ │ │ └── dim_bc_config │ │ │ │ └── dim_config │ │ │ ├── ic_dir │ │ │ │ └── ic_config │ │ │ ├── model_dir │ │ │ │ └── model_config │ │ │ └── ref_sol_dir │ │ │ │ └── ref_sol_config │ │ ├── dim_stokes_2 │ │ │ ├── bc_dir │ │ │ │ └── bc_config │ │ │ ├── config │ │ │ ├── dim_dir │ │ │ │ ├── bc_dir │ │ │ │ │ └── dim_bc_config │ │ │ │ ├── dim_config │ │ │ │ ├── mesh.vol │ │ │ │ └── phi.sol │ │ │ ├── ic_dir │ │ │ │ └── ic_config │ │ │ ├── model_dir │ │ │ │ └── model_config │ │ │ └── ref_sol_dir │ │ │ │ └── ref_sol_config │ │ └── test_dim.py │ ├── ins │ │ ├── pressure_flow_in_pipe_stress │ │ │ ├── bc_dir │ │ │ │ └── bc_config │ │ │ ├── config │ │ │ ├── ic_dir │ │ │ │ └── ic_config │ │ │ ├── model_dir │ │ │ │ └── model_config │ │ │ └── ref_sol_dir │ │ │ │ └── ref_sol_config │ │ ├── pressure_flow_in_pipe_velocity │ │ │ ├── bc_dir │ │ │ │ └── bc_config │ │ │ ├── config │ │ │ ├── ic_dir │ │ │ │ └── ic_config │ │ │ ├── model_dir │ │ │ │ └── model_config │ │ │ └── ref_sol_dir │ │ │ │ └── ref_sol_config │ │ ├── sinusoidal_transient │ │ │ ├── bc_dir │ │ │ │ └── bc_config │ │ │ ├── config │ │ │ ├── ic_dir │ │ │ │ └── ic_config │ │ │ ├── model_dir │ │ │ │ └── model_config │ │ │ └── ref_sol_dir │ │ │ │ └── ref_sol_config │ │ └── test_ins.py │ ├── mcins │ │ ├── 0th_rxn │ │ │ ├── bc_dir │ │ │ │ └── bc_config │ │ │ ├── config │ │ │ ├── ic_dir │ │ │ │ └── ic_config │ │ │ ├── model_dir │ │ │ │ └── model_config │ │ │ └── ref_sol_dir │ │ │ │ └── ref_sol_config │ │ ├── 1st_rxn │ │ │ ├── bc_dir │ │ │ │ └── bc_config │ │ │ ├── config │ │ │ ├── ic_dir │ │ │ │ └── ic_config │ │ │ ├── model_dir │ │ │ │ └── model_config │ │ │ └── ref_sol_dir │ │ │ │ └── ref_sol_config │ │ ├── 1st_rxn_coupled │ │ │ ├── bc_dir │ │ │ │ └── bc_config │ │ │ ├── config │ │ │ ├── ic_dir │ │ │ │ └── ic_config │ │ │ ├── model_dir │ │ │ │ └── model_config │ │ │ └── ref_sol_dir │ │ │ │ └── ref_sol_config │ │ ├── diffusion │ │ │ ├── bc_dir │ │ │ │ └── bc_config │ │ │ ├── config │ │ │ ├── ic_dir │ │ │ │ └── ic_config │ │ │ ├── model_dir │ │ │ │ └── model_config │ │ │ └── ref_sol_dir │ │ │ │ └── ref_sol_config │ │ ├── diffusion_convection │ │ │ ├── bc_dir │ │ │ │ └── bc_config │ │ │ ├── config │ │ │ ├── ic_dir │ │ │ │ └── ic_config │ │ │ ├── model_dir │ │ │ │ └── model_config │ │ │ └── ref_sol_dir │ │ │ │ └── ref_sol_config │ │ ├── purely_convective │ │ │ ├── bc_dir │ │ │ │ └── bc_config │ │ │ ├── config │ │ │ ├── ic_dir │ │ │ │ └── ic_config │ │ │ ├── model_dir │ │ │ │ └── model_config │ │ │ └── ref_sol_dir │ │ │ │ └── ref_sol_config │ │ └── test_mcins.py │ ├── poisson │ │ ├── h_convergence │ │ │ ├── bc_dir │ │ │ │ └── bc_config │ │ │ ├── config │ │ │ ├── ic_dir │ │ │ │ └── ic_config │ │ │ ├── model_dir │ │ │ │ └── model_config │ │ │ └── ref_sol_dir │ │ │ │ └── ref_sol_config │ │ ├── test_poisson.py │ │ └── transient_coarse │ │ │ ├── bc_dir │ │ │ └── bc_config │ │ │ ├── config │ │ │ ├── ic_dir │ │ │ └── ic_config │ │ │ ├── model_dir │ │ │ └── model_config │ │ │ └── ref_sol_dir │ │ │ └── ref_sol_config │ └── stokes │ │ ├── stationary_pipe │ │ 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