├── .gitignore ├── LICENSE ├── case_studies.zip ├── case_studies ├── .DS_Store ├── JEV2017 │ ├── .DS_Store │ ├── DESCRIPTION │ ├── LICENSE │ ├── NAMESPACE │ ├── R │ │ ├── GetCrI.R │ │ ├── fitmodel.R │ │ ├── funnelplot.R │ │ ├── funnelplot_grouped.R │ │ ├── magnifytext.R │ │ ├── multiplot.R │ │ ├── mysummary.R │ │ ├── plotparameter.R │ │ ├── plotposteriors.R │ │ ├── plotpower.R │ │ ├── plotresults.R │ │ ├── postposterior.R │ │ ├── prettyfunnelplot.R │ │ └── summarize.R │ ├── README.md │ ├── StanModels │ │ ├── rema.stan │ │ └── rema2.stan │ ├── data │ │ ├── MetaAnalysisData.csv │ │ └── SDsMetaAnalysis.Rda │ ├── documentation │ │ └── Documentation_JaegerEngelmannVasishthJML2017.pdf │ ├── inst │ │ └── cuesimmetaanalysis.R │ └── vignettes │ │ ├── .DS_Store │ │ ├── JAGSModels │ │ ├── RandomEffectsMetaAnalysisM1.jag │ │ ├── RandomEffectsMetaRegressionAnalysisDepTypePR.jag │ │ ├── RandomEffectsMetaRegressionAnalysisPRonly.jag │ │ ├── RandomEffectsMetaRegressionAnalysisPromPR.jag │ │ ├── RandomEffectsMetaRegressionAnalysisPromslidingPR.jag │ │ └── RandomEffectsMetaRegressionAnalysispred.jag │ │ ├── JEVMetaAnalysis.Rmd │ │ ├── JEVMetaAnalysis.html │ │ └── StanModels │ │ ├── .DS_Store │ │ ├── rema.stan │ │ ├── rema2.rda │ │ └── rema2.stan ├── JoPBayes │ ├── JPhonBayesianDataAnalysis.R │ ├── LICENSE │ ├── MeasErrVarInt.stan │ ├── README.md │ ├── data │ │ ├── english.txt │ │ └── songyuan.txt │ ├── joptutorial.Rmd │ ├── joptutorial.html │ └── paper │ │ └── jopbayes2018.pdf └── VMJG2018 │ ├── .DS_Store │ ├── PreregistrationLK13Rep │ ├── PreregLK13MertzenJaegerVasishth.Rnw │ ├── PreregLK13MertzenJaegerVasishth.pdf │ ├── figure │ │ ├── RepResultsE1-1-eps-converted-to.pdf │ │ ├── RepResultsE1-1.eps │ │ ├── RepResultsE1-2-eps-converted-to.pdf │ │ ├── RepResultsE1-2.eps │ │ ├── RepResultsE1-3-eps-converted-to.pdf │ │ ├── RepResultsE1-3.eps │ │ ├── RepResultsE1-4-eps-converted-to.pdf │ │ ├── RepResultsE1-4.eps │ │ ├── RepResultsE12-1-eps-converted-to.pdf │ │ ├── RepResultsE12-1.eps │ │ ├── RepResultsE12-2-eps-converted-to.pdf │ │ ├── RepResultsE12-2.eps │ │ ├── RepResultsE12-3-eps-converted-to.pdf │ │ ├── RepResultsE12-3.eps │ │ ├── RepResultsE12-4-eps-converted-to.pdf │ │ ├── RepResultsE12-4.eps │ │ ├── RepResultsE2-1-eps-converted-to.pdf │ │ ├── RepResultsE2-1.eps │ │ ├── RepResultsE2-2-eps-converted-to.pdf │ │ ├── RepResultsE2-2.eps │ │ ├── RepResultsE2-3-eps-converted-to.pdf │ │ ├── RepResultsE2-3.eps │ │ ├── RepResultsE2-4-eps-converted-to.pdf │ │ ├── RepResultsE2-4.eps │ │ ├── pred_LK13-1-eps-converted-to.pdf │ │ ├── pred_LK13-1.eps │ │ ├── pred_LK13-2-eps-converted-to.pdf │ │ ├── pred_LK13-2.eps │ │ ├── predictions_LK13-1-eps-converted-to.pdf │ │ ├── predictions_LK13-1.eps │ │ ├── predictions_LK13-2-eps-converted-to.pdf │ │ ├── predictions_LK13-2.eps │ │ ├── residuals-1.eps │ │ ├── residuals-2.eps │ │ ├── resultsE1-1-eps-converted-to.pdf │ │ ├── resultsE1-1.eps │ │ ├── resultsE1-2-eps-converted-to.pdf │ │ ├── resultsE1-2.eps │ │ ├── resultsE2-1-eps-converted-to.pdf │ │ ├── resultsE2-1.eps │ │ ├── resultsE2-2-eps-converted-to.pdf │ │ └── resultsE2-2.eps │ ├── figures │ │ ├── fig-residuals-1-eps-converted-to.pdf │ │ ├── fig-residuals-1.eps │ │ ├── fig-residuals-2-eps-converted-to.pdf │ │ └── fig-residuals-2.eps │ ├── images │ │ ├── E1cd.png │ │ ├── E2cd.png │ │ ├── LK13CondMeans1.png │ │ ├── LK13CondMeans2.png │ │ ├── LK13PredE1.png │ │ ├── LK13PredE2.png │ │ ├── LK13Prediction1.png │ │ ├── LK13Predictions2.png │ │ ├── LK13originalitemE1c.png │ │ ├── LK13originalitemE1simplified.png │ │ ├── LK13originalitemE2.png │ │ ├── LK13originalitemE2c.png │ │ ├── LKitem.png │ │ ├── LKitem2.png │ │ ├── LKoriginalpredictions.png │ │ ├── LKresultE1.png │ │ ├── LKresultE2.png │ │ ├── PlotETRepE1crit.png │ │ ├── PlotETRepE1post.png │ │ ├── PlotETRepE2crit.png │ │ ├── PlotETRepE2post.png │ │ ├── PlotETRepMergedcrit.png │ │ ├── PlotETRepMergedpost.png │ │ ├── PlotLK13E1crit.png │ │ ├── PlotLK13E1post.png │ │ ├── PlotLK13E2crit.png │ │ ├── PlotLK13E2post.png │ │ ├── PlotSPRRepE1crit.png │ │ ├── PlotSPRRepE1post.png │ │ ├── PlotSPRRepE2crit.png │ │ ├── PlotSPRRepE2post.png │ │ ├── PlotSPRRepMergedcrit.png │ │ ├── PlotSPRRepMergedpost.png │ │ ├── fig-residuals-1-eps-converted-to.pdf │ │ └── fig-residuals-2-eps-converted-to.pdf │ └── lit.bib │ ├── StanModels │ ├── logitmaximal.stan │ ├── mLK13Repl.stan │ ├── maxModel.stan │ ├── maxModelRaw.stan │ ├── maxModelTargetMismatch.stan │ ├── maxModelmerged.stan │ ├── maxModelmerged2.stan │ ├── maxModelmerged2nested.stan │ └── responseaccmaximal.stan │ ├── StatSigFilter.bib │ ├── VMJG2018.Rnw │ ├── data │ ├── .DS_Store │ ├── DillonE1.txt │ ├── E1SPRlevykellerExp1.txt │ ├── E2ETlevykellerExp1.txt │ ├── E3SPRlevykellerExp2.txt │ ├── E4ETlevykellerExp2.txt │ ├── E5SPRlevykellerExp12.txt │ ├── E6ETlevykellerExp12.txt │ ├── Exp2fillersFreq.txt │ ├── Exp4fillersFreq.txt │ ├── Exp6fillersFreq.txt │ ├── Exp7fillersFreq.txt │ ├── Lago.csv │ ├── OrigLevyKellerData │ │ └── prediction_experiment_data │ │ │ ├── experiment1 │ │ │ ├── lmr │ │ │ │ ├── results │ │ │ │ │ ├── README │ │ │ │ │ ├── RESULTS │ │ │ │ │ ├── critical_values │ │ │ │ │ ├── errors │ │ │ │ │ ├── exp1.cnt │ │ │ │ │ ├── exp1.con │ │ │ │ │ ├── exp1.del │ │ │ │ │ ├── exp1.lst │ │ │ │ │ ├── exp1.tra │ │ │ │ │ ├── exp1.tra_rbt │ │ │ │ │ ├── exp1_1fx.res │ │ │ │ │ ├── exp1_1fx_r.res │ │ │ │ │ ├── exp1_1ps.res │ │ │ │ │ ├── exp1_1ps_r.res │ │ │ │ │ ├── exp1_2ps.res │ │ │ │ │ ├── exp1_2ps_r.res │ │ │ │ │ ├── exp1_fpr.res │ │ │ │ │ ├── exp1_fpr_r.res │ │ │ │ │ ├── exp1_gaz.res │ │ │ │ │ ├── exp1_gaz_r.res │ │ │ │ │ ├── exp1_rbt.res │ │ │ │ │ ├── exp1_rbt_r.res │ │ │ │ │ ├── exp1_rpt.res │ │ │ │ │ ├── exp1_rpt_r.res │ │ │ │ │ ├── exp1_skp.res │ │ │ │ │ ├── exp1_skp_r.res │ │ │ │ │ ├── exp1_tt.res │ │ │ │ │ ├── exp1_tt_r.res │ │ │ │ │ ├── preferences_by_item │ │ │ │ │ └── rename_files │ │ │ │ └── scripts │ │ │ │ │ ├── analyze.R │ │ │ │ │ ├── reformat.pl │ │ │ │ │ └── reformat_binary.pl │ │ │ └── stimuli │ │ │ │ ├── fillers │ │ │ │ ├── german_expt.script │ │ │ │ └── stimuli │ │ │ └── experiment2 │ │ │ ├── lmr │ │ │ ├── results │ │ │ │ ├── README │ │ │ │ ├── RESULTS │ │ │ │ ├── critical_values │ │ │ │ ├── delimit_regions.perl │ │ │ │ ├── errors │ │ │ │ ├── exp3.cnt │ │ │ │ ├── exp3.con │ │ │ │ ├── exp3.del │ │ │ │ ├── exp3.inl │ │ │ │ ├── exp3.lst │ │ │ │ ├── exp3.tra │ │ │ │ ├── exp3.tra_rbt │ │ │ │ ├── exp3_1fx.res │ │ │ │ ├── exp3_1fx_r.res │ │ │ │ ├── exp3_1ps.res │ │ │ │ ├── exp3_1ps_r.res │ │ │ │ ├── exp3_2ps.res │ │ │ │ ├── exp3_2ps_r.res │ │ │ │ ├── exp3_fpr.res │ │ │ │ ├── exp3_fpr_r.res │ │ │ │ ├── exp3_gaz.res │ │ │ │ ├── exp3_gaz_r.res │ │ │ │ ├── exp3_rbt.res │ │ │ │ ├── exp3_rbt_r.res │ │ │ │ ├── exp3_rpt.res │ │ │ │ ├── exp3_rpt_r.res │ │ │ │ ├── exp3_skp.res │ │ │ │ ├── exp3_skp_r.res │ │ │ │ ├── exp3_tt.res │ │ │ │ ├── exp3_tt_r.res │ │ │ │ └── rename_files │ │ │ └── scripts │ │ │ │ ├── analyze.R │ │ │ │ ├── reformat.pl │ │ │ │ └── reformat_binary.pl │ │ │ └── stimuli │ │ │ ├── COMMENTS │ │ │ ├── DESIGN │ │ │ ├── README │ │ │ ├── diff │ │ │ ├── fillers.formatted │ │ │ ├── lexicalizations │ │ │ ├── practice │ │ │ ├── questions │ │ │ ├── sep06german.script │ │ │ ├── sep06german_corrected.script │ │ │ └── stimuli │ ├── SanityCheckFillers.R │ ├── Tucker.RData │ ├── Wagers.Rdata │ ├── agrmt_mismatch.Rda │ ├── data_LK13rep100subj.txt │ ├── fillers_words.txt │ ├── freqs.txt │ ├── mergeFreqs.R │ ├── posteriorsTargetMismatch.Rda │ ├── public_article_data.txt │ └── smallsamplesestimates.Rda │ └── paper │ └── VasishthEtAl2018JML.pdf ├── css ├── normalize.css └── skeleton.css ├── exercises ├── .DS_Store ├── 03_01_PriorPredDistrn_FakeDataGen.pdf ├── 03_02_LinearModelingExercise_PowerPose.pdf ├── 05_01_BayesFactor.pdf ├── StanModels │ └── linearmodel.stan ├── data │ ├── Data_SwetsEtAl2008.csv │ ├── GrodnerGibson2005E1.csv │ ├── HusainEtAlexpt1data.txt │ ├── LevyKeller2013 │ │ ├── E1SPRlevykellerExp1.txt │ │ ├── E2ETlevykellerExp1.txt │ │ ├── E3SPRlevykellerExp2.txt │ │ ├── E4ETlevykellerExp2.txt │ │ ├── E5SPRlevykellerExp12.txt │ │ ├── E6ETlevykellerExp12.txt │ │ ├── data_LK13rep100subj.txt │ │ ├── exp1_tt_r.res │ │ └── exp3_tt_r.res │ ├── PSRedData.sav │ ├── beauty.txt │ ├── button_press.dat │ ├── ccy-clean-data.csv │ ├── education.dat │ ├── gibsonwu2012data.txt │ ├── gibsonwu2012datarepeat.txt │ └── interferencedata.Rda └── figures │ ├── ppcplot1.png │ └── ppcplot2.png ├── images └── lorikeet.jpg ├── index.html ├── lecturenotes ├── 01Foundations.Rmd ├── 02IntroBayes.Rmd ├── 03LinearModeling.Rmd ├── 04HierarchicalLinearModeling.Rmd ├── BayesianLinearModeling.pdf ├── IntroBayes.Rmd ├── IntroBayes.pdf ├── R │ └── multiplot.R ├── bayes.bib ├── data │ ├── Data_SwetsEtAl2008.csv │ ├── GrodnerGibson2005E1.csv │ ├── HusainEtAlexpt1data.txt │ ├── LevyKeller2013 │ │ ├── E1SPRlevykellerExp1.txt │ │ ├── E2ETlevykellerExp1.txt │ │ ├── E3SPRlevykellerExp2.txt │ │ ├── E4ETlevykellerExp2.txt │ │ ├── E5SPRlevykellerExp12.txt │ │ ├── E6ETlevykellerExp12.txt │ │ ├── data_LK13rep100subj.txt │ │ ├── exp1_tt_r.res │ │ └── exp3_tt_r.res │ ├── beauty.txt │ ├── button_press.dat │ ├── ccy-clean-data.csv │ ├── education.dat │ ├── gibsonwu2012data.txt │ └── gibsonwu2012datarepeat.txt └── prefix.tex └── slides ├── 00_FrequentistReview.pdf ├── 00_FrequentistReview.tex ├── 00_IntroLectureBayesCourse.pdf ├── 01_foundations.Rmd ├── 01_foundations.pdf ├── 02_Sampling.Rmd ├── 02_Sampling.pdf ├── 02_bayes.Rmd ├── 02_bayes.pdf ├── 03_linearmodeling.Rmd ├── 03_linearmodeling.pdf ├── 04HLMAdditionalNotesShrinkage.pdf ├── 04_hlm.Rmd ├── 04_hlm.pdf ├── 05_modelcomparison.Rmd ├── 05_modelcomparison.pdf ├── code_snippets ├── 05_modelcomparison.R └── gen_fake_lnorm.R ├── data ├── GrodnerGibson2005E1.csv └── button_press.dat └── figures ├── fig-demotypeM-1.pdf ├── figure-unnamed-chunk-1-1-eps-converted-to.pdf └── figure-unnamed-chunk-1-1.eps /.gitignore: -------------------------------------------------------------------------------- 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