├── .env.sample ├── .github ├── CODEOWNERS ├── ISSUE_TEMPLATE │ ├── indexing-improvement.md │ └── interface-improvement.md ├── pull_request_template.md └── workflows │ ├── analyze-endpoints.yml │ ├── codeql-analysis.yml │ ├── deploy-website.yml │ └── index-shapes.yml ├── .gitignore ├── CONTRIBUTING.md ├── EXTRAS_GITHUB_REPOSITORIES.txt ├── EXTRAS_GITHUB_REPOSITORIES_2.txt ├── EXTRAS_SPARQL_ENDPOINTS.txt ├── LICENSE ├── README.md ├── api ├── get-active-endpoints.rq ├── get-files.rq ├── get-hcls-metadata.rq ├── get-pathways-for-genes.rq ├── get-repositories.rq ├── get-shapes.rq ├── search-shapes.rq └── stats-shapes-types.rq ├── deploy.sh ├── doap-project.ttl ├── docker-compose.yml ├── endpoint.txt ├── etl ├── Dockerfile ├── index_shapes.py ├── main.py ├── requirements.txt ├── setup.py └── src │ ├── __init__.py │ ├── config.py │ ├── fetch.py │ ├── load.py │ ├── process.py │ └── utils.py ├── nginx-elastic.conf ├── nginx-oxigraph.conf ├── prepare_virtuoso.sh └── website ├── .dockerignore ├── App.css ├── App.tsx ├── Dockerfile ├── app.json ├── assets ├── icon.png ├── shapes-of-you-architecture.png ├── shapes-of-you-ontology.png └── shapes-of-you-ontology.ttl ├── babel.config.js ├── package.json ├── src ├── components │ ├── Config.tsx │ ├── Footer.tsx │ ├── NavBar.tsx │ └── QueryYasguiButton.tsx └── pages │ ├── About.tsx │ ├── SemanticIndex.tsx │ ├── SparqlEndpointsList.tsx │ └── Yasgui.tsx ├── tsconfig.json └── yarn.lock /.env.sample: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/vemonet/shapes-of-you/HEAD/.env.sample -------------------------------------------------------------------------------- /.github/CODEOWNERS: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/vemonet/shapes-of-you/HEAD/.github/CODEOWNERS -------------------------------------------------------------------------------- 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