├── .github └── workflows │ ├── README.md │ ├── create_release.yml │ ├── val.bat │ ├── val.sh │ └── validate.yml ├── .gitignore ├── .gitmodules ├── LICENSE ├── Makefile ├── README.md ├── images └── graph.png ├── include ├── gfastats-global.h ├── input.h ├── main.h └── validate.h ├── instructions └── README.md ├── scaffolding └── README.md ├── scripts ├── gfastats_stats.sh ├── plot_runtime.R └── submit_gfastats_stats.sh ├── src ├── generate-random-fasta.cpp ├── generate-tests.cpp ├── input.cpp ├── main.cpp └── validate.cpp ├── testFiles ├── random1.agp ├── random1.comment.sak ├── random1.fasta ├── random1.fasta.1.bed ├── random1.fasta.2.bed ├── random1.fasta.3.bed ├── random1.fasta.4.bed ├── random1.fasta.5.bed ├── random1.fasta.gz ├── random1.fastq ├── random1.fastq.gz ├── random1.gfa2 ├── random1.gfa2.instructions.sak ├── random1.hc.sak ├── random1.hdc.sak ├── random1.instructions.sak ├── random1.mask.sak ├── random1.rename.sak ├── random1.rvcp.sak ├── random2.gfa ├── random2.gfa.gz ├── random2.gfa2 ├── random2.gfa2.agp ├── random2.gfa2.gz ├── random2.noseq.gfa ├── random3.sorting.fasta ├── random4.fasta ├── random5.findovl.gfa └── random6.circular.gfa └── validateFiles ├── README.md ├── random1.fasta.10.tst ├── random1.fasta.11.tst ├── random1.fasta.3.tst ├── random1.fasta.4.tst ├── random1.fasta.5.tst ├── random1.fasta.6.tst ├── random1.fasta.7.tst ├── random1.fasta.78.tst ├── random1.fasta.79.tst ├── random1.fasta.8.tst ├── random1.fasta.80.tst ├── random1.fasta.81.tst ├── random1.fasta.82.tst ├── random1.fasta.83.tst ├── random1.fasta.84.tst ├── random1.fasta.85.tst ├── random1.fasta.86.tst ├── random1.fasta.87.tst ├── random1.fasta.88.tst ├── random1.fasta.89.tst ├── random1.fasta.9.tst ├── random1.fasta.90.tst ├── random1.fasta.91.tst ├── random1.fasta.92.tst ├── random1.fasta.93.tst ├── random1.fasta.94.tst ├── random1.fasta.95.tst ├── random1.fasta.96.tst ├── random1.fasta.gz.100.tst ├── random1.fasta.gz.69.tst ├── random1.fasta.gz.70.tst ├── random1.fasta.gz.71.tst ├── random1.fasta.gz.72.tst ├── random1.fasta.gz.73.tst ├── random1.fasta.gz.74.tst ├── random1.fasta.gz.75.tst ├── random1.fasta.gz.76.tst ├── random1.fasta.gz.77.tst ├── random1.fasta.gz.97.tst ├── random1.fasta.gz.98.tst ├── random1.fasta.gz.99.tst ├── random1.fastq.101.tst ├── random1.fastq.102.tst ├── random1.fastq.103.tst ├── random1.fastq.104.tst ├── random1.fastq.54.tst ├── random1.fastq.55.tst ├── random1.fastq.56.tst ├── random1.fastq.57.tst ├── random1.fastq.58.tst ├── random1.fastq.59.tst ├── random1.fastq.60.tst ├── random1.fastq.61.tst ├── random1.fastq.62.tst ├── random1.fastq.gz.105.tst ├── random1.fastq.gz.106.tst ├── random1.fastq.gz.107.tst ├── random1.fastq.gz.108.tst ├── random1.fastq.gz.33.tst ├── random1.fastq.gz.34.tst ├── random1.fastq.gz.35.tst ├── random1.fastq.gz.36.tst ├── random1.fastq.gz.37.tst ├── random1.fastq.gz.38.tst ├── random1.fastq.gz.39.tst ├── random1.fastq.gz.40.tst ├── random1.fastq.gz.41.tst ├── random1.gfa2.109.tst ├── random1.gfa2.110.tst ├── random1.gfa2.111.tst ├── random1.gfa2.112.tst ├── random1.gfa2.113.tst ├── random1.gfa2.12.tst ├── random1.gfa2.13.tst ├── random1.gfa2.14.tst ├── random2.gfa.42.tst ├── random2.gfa.43.tst ├── random2.gfa.44.tst ├── random2.gfa.gz.45.tst ├── random2.gfa.gz.46.tst ├── random2.gfa.gz.47.tst ├── random2.gfa2.63.tst ├── random2.gfa2.64.tst ├── random2.gfa2.65.tst ├── random2.gfa2.gz.51.tst ├── random2.gfa2.gz.52.tst ├── random2.gfa2.gz.53.tst ├── random2.noseq.gfa.114.tst ├── random2.noseq.gfa.48.tst ├── random2.noseq.gfa.49.tst ├── random2.noseq.gfa.50.tst ├── random3.sorting.fasta.24.tst ├── random3.sorting.fasta.25.tst ├── random3.sorting.fasta.26.tst ├── random3.sorting.fasta.27.tst ├── random3.sorting.fasta.28.tst ├── random3.sorting.fasta.29.tst ├── random3.sorting.fasta.30.tst ├── random3.sorting.fasta.31.tst ├── random3.sorting.fasta.32.tst ├── random4.fasta.115.tst ├── random4.fasta.15.tst ├── random4.fasta.16.tst ├── random4.fasta.17.tst ├── 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