├── README.md ├── evaluation ├── epitoperank.csv ├── evaluate.py ├── evaluation.ipynb └── microaucs.csv ├── methods_results ├── SETE_stats.txt ├── TCR-BERT_stats.txt ├── TCRAI_stats.txt ├── TCRGP_stats.txt ├── TCRbase_CDR123w_stats.txt ├── TCRbase_CDR3ab_stats.txt ├── TCRbase_CDR3b_stats.txt ├── TITAN_stats.txt ├── diffrbm_alpha_stats.txt ├── diffrbm_beta_stats.txt ├── netTCR_cdr123ab_stats.txt ├── netTCR_cdr3ab_stats.txt ├── netTCR_cdr3b_stats.txt ├── pMTnet_stats.txt ├── random_stats.txt ├── sonia_alpha_stats.txt ├── sonia_beta_stats.txt ├── sonia_paired_stats.txt ├── tcrdist3_stats.txt ├── tcrexa_stats.txt ├── tcrexab_stats.txt └── tcrexb_stats.txt ├── methods_scripts ├── immrep_SETE │ ├── README.md │ └── immrep_SETE.py ├── immrep_TCRGP │ ├── README.md │ └── immrep_TCRGP.py ├── immrep_tcrdist │ ├── README.md │ └── immrep_tcrdist.py └── immrep_tcrex │ └── tcrexmodel.ipynb ├── negativeData_controls ├── README.txt ├── TCR_COV1-memCD8.tsv ├── TCR_COV10_memCD8.tsv ├── TCR_COV11_memCD8.tsv ├── TCR_COV12_memCD8.tsv ├── TCR_COV2-memCD8.tsv ├── TCR_COV3-memCD8.tsv ├── TCR_COV4-memCD8.tsv ├── TCR_COV5-memCD8.tsv ├── TCR_COV6_memCD8.tsv ├── TCR_COV7_memCD8.tsv ├── TCR_COV8_memCD8.tsv └── TCR_COV9_memCD8.tsv ├── test_set ├── ATDALMTGF.txt ├── CINGVCWTV.txt ├── GILGFVFTL.txt ├── GLCTLVAML.txt ├── GPRLGVRAT.txt ├── HPVTKYIM.txt ├── KSKRTPMGF.txt ├── LLWNGPMAV.txt ├── LTDEMIAQY.txt ├── NLVPMVATV.txt ├── NQKLIANQF.txt ├── NYNYLYRLF.txt ├── RAQAPPPSW.txt ├── README.txt ├── SPRWYFYYL.txt ├── TPRVTGGGAM.txt ├── TTDPSFLGRY.txt ├── YLQPRTFLL.txt ├── testSet_Global.txt └── testSet_Global_NoHeaders.txt ├── training_data ├── ATDALMTGF.txt ├── CINGVCWTV.txt ├── GILGFVFTL.txt ├── GLCTLVAML.txt ├── GPRLGVRAT.txt ├── HPVTKYIM.txt ├── KSKRTPMGF.txt ├── LLWNGPMAV.txt ├── LTDEMIAQY.txt ├── NLVPMVATV.txt ├── NQKLIANQF.txt ├── NYNYLYRLF.txt ├── RAQAPPPSW.txt ├── README.txt ├── SPRWYFYYL.txt ├── TPRVTGGGAM.txt ├── TTDPSFLGRY.txt └── YLQPRTFLL.txt └── true_set ├── ATDALMTGF.txt 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