├── .gitignore ├── .idea └── vcs.xml ├── LICENSE ├── README.md ├── doc ├── annotation-Files.md ├── general-user-options.md ├── img │ └── spliceq_levels.png ├── installation.md ├── output.md ├── overlap-of-genomic-elements.md ├── quantifing-Splicing-Efficiency.md ├── reverse-Intron-Expression-Ratio.md └── wiki.md ├── pyproject.toml ├── requirements.txt ├── setup.py └── spliceq ├── SPLICE-q.py └── __init__.py /.gitignore: -------------------------------------------------------------------------------- 1 | SPLICE_q.egg-info/** 2 | venv/** -------------------------------------------------------------------------------- /.idea/vcs.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/vrmelo/SPLICE-q/HEAD/.idea/vcs.xml -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/vrmelo/SPLICE-q/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/vrmelo/SPLICE-q/HEAD/README.md -------------------------------------------------------------------------------- /doc/annotation-Files.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/vrmelo/SPLICE-q/HEAD/doc/annotation-Files.md -------------------------------------------------------------------------------- /doc/general-user-options.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/vrmelo/SPLICE-q/HEAD/doc/general-user-options.md -------------------------------------------------------------------------------- /doc/img/spliceq_levels.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/vrmelo/SPLICE-q/HEAD/doc/img/spliceq_levels.png -------------------------------------------------------------------------------- /doc/installation.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/vrmelo/SPLICE-q/HEAD/doc/installation.md -------------------------------------------------------------------------------- /doc/output.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/vrmelo/SPLICE-q/HEAD/doc/output.md -------------------------------------------------------------------------------- /doc/overlap-of-genomic-elements.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/vrmelo/SPLICE-q/HEAD/doc/overlap-of-genomic-elements.md -------------------------------------------------------------------------------- /doc/quantifing-Splicing-Efficiency.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/vrmelo/SPLICE-q/HEAD/doc/quantifing-Splicing-Efficiency.md -------------------------------------------------------------------------------- /doc/reverse-Intron-Expression-Ratio.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/vrmelo/SPLICE-q/HEAD/doc/reverse-Intron-Expression-Ratio.md -------------------------------------------------------------------------------- /doc/wiki.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/vrmelo/SPLICE-q/HEAD/doc/wiki.md -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/vrmelo/SPLICE-q/HEAD/pyproject.toml -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- 1 | --index-url https://pypi.python.org/simple/ 2 | 3 | -e . -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/vrmelo/SPLICE-q/HEAD/setup.py -------------------------------------------------------------------------------- /spliceq/SPLICE-q.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/vrmelo/SPLICE-q/HEAD/spliceq/SPLICE-q.py -------------------------------------------------------------------------------- /spliceq/__init__.py: -------------------------------------------------------------------------------- 1 | --------------------------------------------------------------------------------