├── .github └── workflows │ └── ci.yml ├── .gitignore ├── Cargo.lock ├── Cargo.toml ├── LICENSE ├── README.md ├── benches └── bench.rs ├── scripts ├── Makefile ├── bench_schemas.sh ├── benchmark_against_tabix.sh ├── benchmark_query.sh ├── compare_sizes.sh ├── download_refgene.sh ├── download_repeatmasker.sh ├── install_duckdb.sh └── sql │ ├── download_refgene.sql │ └── download_repeatmasker.sql ├── src ├── bin │ ├── commands │ │ ├── mod.rs │ │ ├── pack.rs │ │ ├── query.rs │ │ ├── random_bed.rs │ │ └── stats.rs │ └── main.rs ├── error.rs ├── index │ ├── binning.rs │ ├── binning_index.rs │ └── mod.rs ├── io.rs ├── lib.rs ├── records │ └── mod.rs ├── stats.rs ├── store.rs └── test_utils.rs ├── tests ├── setup_tabix_validation.sh └── tabix_validation.rs └── workflows └── ci.yml /.github/workflows/ci.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/vsbuffalo/hgindex/HEAD/.github/workflows/ci.yml 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