├── .coverage ├── LICENSE.txt ├── MANIFEST.in ├── README.md ├── circle.yml ├── doc ├── Makefile └── source │ ├── additional_tools.rst │ ├── conf.py │ ├── index.rst │ ├── installation.rst │ ├── modules.rst │ ├── pybraincompare.compare.rst │ ├── pybraincompare.mr.rst │ ├── pybraincompare.ontology.rst │ ├── pybraincompare.report.rst │ ├── pybraincompare.rst │ ├── pybraincompare.template.rst │ ├── pybraincompare.testing.rst │ ├── semantic_image_comparison.rst │ └── spatial_image_comparison.rst ├── example ├── data │ ├── cogatlas_annotate.json │ ├── cogatlas_annotate_triples.tsv │ ├── parcel_matrix.tsv │ ├── parcels.csv │ ├── pearson_corr.pkl │ └── reverse_inference_scores.tsv ├── do_similar_search.py ├── estimate_masking.py ├── make_atlas_svg.py ├── make_connectogram.py ├── make_ontology_tree.py ├── make_reverse_inference_tree.py ├── make_scatter.py ├── plot_histogram.py └── run_quality_analysis.py ├── pybraincompare ├── __init__.py ├── compare │ ├── __init__.py │ ├── atlas.py │ ├── maths.py │ ├── mrutils.py │ ├── network.py │ ├── scatterplot.py │ └── search.py ├── mr │ ├── 2mm16_zstat1_1.nii │ ├── 2mm16_zstat3_1.nii │ ├── 8mm16_zstat1_1.nii │ ├── 8mm16_zstat3_1.nii │ ├── MNI-maxprob-thr25-2mm.nii │ ├── MNI-maxprob-thr25-8mm.nii │ ├── MNI.xml │ ├── MNI152_T1_2mm_brain.nii.gz │ ├── MNI152_T1_2mm_brain_mask.nii.gz │ ├── MNI152_T1_4mm_brain.nii.gz │ ├── MNI152_T1_4mm_brain_mask.nii.gz │ ├── MNI152_T1_8mm_brain_mask.nii.gz │ ├── __init__.py │ ├── datasets.py │ └── transformation.py ├── ontology │ ├── __init__.py │ ├── export.py │ ├── graph.py │ ├── inference.py │ └── tree.py ├── report │ ├── __init__.py │ ├── animate.py │ ├── colors.py │ ├── histogram.py │ ├── image.py │ ├── qa.py │ └── webreport.py ├── template │ ├── __init__.py │ ├── css │ │ └── prettyPhoto.css │ ├── futils.py │ ├── html │ │ ├── brainglass_interface.html │ │ ├── connectogram.html │ │ ├── histogram.html │ │ ├── ontology_tree.html │ │ ├── qa_alerts.html │ │ ├── qa_histograms.html │ │ ├── qa_index.html │ │ ├── qa_single_statmap.html │ │ ├── qa_single_statmap_mean.html │ │ ├── qa_summary_table.html │ │ ├── reverse_inference_tree.html │ │ ├── scatter.html │ │ ├── scatter_atlas.html │ │ ├── scatter_canvas.html │ │ └── similarity_search.html │ ├── js │ │ ├── d3.js │ │ ├── d3.layout.js │ │ └── packages.js │ ├── static │ │ ├── qa_report.zip │ │ └── scatter.zip │ ├── templates.py │ └── visual.py └── testing │ ├── .coverage │ ├── __init__.py │ ├── data │ ├── parcel_matrix.tsv │ ├── parcels.csv │ └── regional_scores.tsv │ ├── run_tests.sh │ ├── test_correlation.py │ ├── test_histogram.py │ ├── test_masking.py │ ├── test_scatterplot_compare.py │ └── test_transformation.py ├── requirements.txt └── setup.py /.coverage: -------------------------------------------------------------------------------- 1 | coveralls 2 | -------------------------------------------------------------------------------- /LICENSE.txt: -------------------------------------------------------------------------------- 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