├── .dockerignore ├── .eslintrc.json ├── .github └── workflows │ └── deploy.yml ├── .gitignore ├── .prettierrc.json ├── .stylelintrc.json ├── Dockerfile ├── LICENSE ├── README.md ├── archive ├── BME_230A_final_paper.pdf └── BME_230A_final_ppt.pdf ├── cli.py ├── devnotes.md ├── examples ├── K-3138 │ └── K-3138.json ├── README ├── sources.json ├── tiny │ ├── tiny.vg │ ├── tiny.xg │ └── tiny.xg.json └── x │ ├── chunk_0_ids_1_130.annotate.txt │ ├── regions.tsv │ ├── x.chunked.xg │ ├── x.chunked.xg.json │ ├── x.vg │ ├── x.xg │ └── x.xg.json ├── package.json ├── packages ├── core │ ├── .eslintrc.json │ ├── __tests__ │ │ ├── index.test.ts │ │ └── model │ │ │ ├── index.test.ts │ │ │ └── tiny.vg.json │ ├── package.json │ ├── src │ │ ├── index.ts │ │ └── model │ │ │ ├── index.ts │ │ │ ├── pgv.ts │ │ │ └── vg.ts │ └── tsconfig.json └── web │ ├── index.html │ ├── package.json │ ├── public │ ├── examples │ └── fonts │ │ └── CourierPrime-Regular.json │ ├── src │ ├── config.ts │ ├── layout │ │ ├── index.ts │ │ ├── layout.ts │ │ └── tubemap.ts │ ├── lib │ │ ├── .gitignore │ │ └── inject.js │ ├── main.scss │ ├── main.ts │ ├── pgv.ts │ ├── renderer │ │ ├── index.ts │ │ ├── renderer.ts │ │ └── three.ts │ ├── repo │ │ ├── index.ts │ │ ├── local.ts │ │ └── repo.ts │ ├── ui │ │ ├── components │ │ │ ├── elements.scss │ │ │ ├── elements.tsx │ │ │ ├── footer.scss │ │ │ ├── footer.tsx │ │ │ ├── header.scss │ │ │ ├── header.tsx │ │ │ ├── index.ts │ │ │ ├── tracks.scss │ │ │ └── tracks.tsx │ │ ├── contexts │ │ │ ├── application.tsx │ │ │ └── index.ts │ │ ├── index.ts │ │ ├── style.css │ │ └── ui.tsx │ ├── utils │ │ ├── events.ts │ │ └── math.ts │ └── vite-env.d.ts │ ├── tsconfig.json │ ├── tsconfig.node.json │ └── vite.config.ts ├── scripts ├── docker │ ├── nginx.conf │ └── start.sh ├── postbuild.js └── prebuild.sh ├── tsconfig.json └── yarn.lock /.dockerignore: -------------------------------------------------------------------------------- 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