├── .Rbuildignore ├── .github └── workflows │ └── basic_checks.yaml ├── .gitignore ├── DESCRIPTION ├── Dockerfile ├── NAMESPACE ├── README.md ├── _pkgdown.yml ├── inst └── vignettes │ └── bibliography.bib └── vignettes ├── PublicDataResources.Rmd └── figures ├── Drug_perturbation.png ├── Drug_sensitivity.png ├── PharmacoSet_structure.png ├── all_nodes_040318.png └── gdc_filtering.png /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/waldronlab/PublicDataResources/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/workflows/basic_checks.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/waldronlab/PublicDataResources/HEAD/.github/workflows/basic_checks.yaml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/waldronlab/PublicDataResources/HEAD/.gitignore -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/waldronlab/PublicDataResources/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/waldronlab/PublicDataResources/HEAD/Dockerfile -------------------------------------------------------------------------------- /NAMESPACE: -------------------------------------------------------------------------------- 1 | exportPattern("^[[:alpha:]]+") 2 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/waldronlab/PublicDataResources/HEAD/README.md -------------------------------------------------------------------------------- /_pkgdown.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/waldronlab/PublicDataResources/HEAD/_pkgdown.yml -------------------------------------------------------------------------------- /inst/vignettes/bibliography.bib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/waldronlab/PublicDataResources/HEAD/inst/vignettes/bibliography.bib -------------------------------------------------------------------------------- /vignettes/PublicDataResources.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/waldronlab/PublicDataResources/HEAD/vignettes/PublicDataResources.Rmd -------------------------------------------------------------------------------- /vignettes/figures/Drug_perturbation.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/waldronlab/PublicDataResources/HEAD/vignettes/figures/Drug_perturbation.png -------------------------------------------------------------------------------- /vignettes/figures/Drug_sensitivity.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/waldronlab/PublicDataResources/HEAD/vignettes/figures/Drug_sensitivity.png -------------------------------------------------------------------------------- /vignettes/figures/PharmacoSet_structure.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/waldronlab/PublicDataResources/HEAD/vignettes/figures/PharmacoSet_structure.png -------------------------------------------------------------------------------- /vignettes/figures/all_nodes_040318.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/waldronlab/PublicDataResources/HEAD/vignettes/figures/all_nodes_040318.png -------------------------------------------------------------------------------- /vignettes/figures/gdc_filtering.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/waldronlab/PublicDataResources/HEAD/vignettes/figures/gdc_filtering.png --------------------------------------------------------------------------------