├── .Rbuildignore ├── .github └── workflows │ └── pr_check.yml ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── NEWS.md ├── R ├── curatedTCGAData-package.R ├── curatedTCGAData.R ├── sysdata.rda └── utils.R ├── README.md ├── _pkgdown.yml ├── data-raw └── diseaseCodes.R ├── inst ├── CITATION ├── REFERENCES.bib ├── extdata │ └── metadata.csv └── scripts │ ├── bits2rd.R │ ├── docsMeta.R │ ├── make-data.R │ ├── make-documentation.R │ ├── make-metadata.R │ ├── make-upload.R │ ├── makeMetaDocs.sh │ └── tools.R ├── man ├── ACC-v2.0.1.Rd ├── ACC-v2.1.0.Rd ├── ACC.Rd ├── BLCA-v2.0.1.Rd ├── BLCA-v2.1.0.Rd ├── BLCA.Rd ├── BRCA-v2.0.1.Rd ├── BRCA-v2.1.0.Rd ├── BRCA.Rd ├── CESC-v2.0.1.Rd ├── CESC-v2.1.0.Rd ├── CESC.Rd ├── CHOL-v2.0.1.Rd ├── CHOL-v2.1.0.Rd ├── CHOL.Rd ├── COAD-v2.0.1.Rd ├── COAD-v2.1.0.Rd ├── COAD.Rd ├── DLBC-v2.0.1.Rd ├── DLBC-v2.1.0.Rd ├── DLBC.Rd ├── ESCA-v2.0.1.Rd ├── ESCA-v2.1.0.Rd ├── ESCA.Rd ├── GBM-v2.0.1.Rd ├── GBM-v2.1.0.Rd ├── GBM.Rd ├── HNSC-v2.0.1.Rd ├── HNSC-v2.1.0.Rd ├── HNSC.Rd ├── KICH-v2.0.1.Rd ├── KICH-v2.1.0.Rd ├── KICH.Rd ├── KIRC-v2.0.1.Rd ├── KIRC-v2.1.0.Rd ├── KIRC.Rd ├── KIRP-v2.0.1.Rd ├── KIRP-v2.1.0.Rd ├── KIRP.Rd ├── LAML-v2.0.1.Rd ├── LAML-v2.1.0.Rd ├── LAML.Rd ├── LGG-v2.0.1.Rd ├── LGG-v2.1.0.Rd ├── LGG.Rd ├── LIHC-v2.0.1.Rd ├── LIHC-v2.1.0.Rd ├── LIHC.Rd ├── LUAD-v2.0.1.Rd ├── LUAD-v2.1.0.Rd ├── LUAD.Rd ├── LUSC-v2.0.1.Rd ├── LUSC-v2.1.0.Rd ├── LUSC.Rd ├── MESO-v2.0.1.Rd ├── MESO-v2.1.0.Rd ├── MESO.Rd ├── OV-v2.0.1.Rd ├── OV-v2.1.0.Rd ├── OV-v2.1.1.Rd ├── OV.Rd ├── PAAD-v2.0.1.Rd ├── PAAD-v2.1.0.Rd ├── PAAD.Rd ├── PCPG-v2.0.1.Rd ├── PCPG-v2.1.0.Rd ├── PCPG.Rd ├── PRAD-v2.0.1.Rd ├── PRAD-v2.1.0.Rd ├── PRAD.Rd ├── READ-v2.0.1.Rd ├── READ-v2.1.0.Rd ├── READ.Rd ├── SARC-v2.0.1.Rd ├── SARC-v2.1.0.Rd ├── SARC.Rd ├── SKCM-v2.0.1.Rd ├── SKCM-v2.1.0.Rd ├── SKCM-v2.1.1.Rd ├── SKCM.Rd ├── STAD-v2.0.1.Rd ├── STAD-v2.1.0.Rd ├── STAD.Rd ├── TGCT-v2.0.1.Rd ├── TGCT-v2.1.0.Rd ├── TGCT.Rd ├── THCA-v2.0.1.Rd ├── THCA-v2.1.0.Rd ├── THCA.Rd ├── 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